Wall clock time and date at job start Tue Mar 31 2020 14:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35274 * 126.71271 * 2 1 4 4 C 1.41927 * 103.96155 * 180.11228 * 3 2 1 5 5 O 1.35706 * 126.87436 * 179.91361 * 4 3 2 6 6 C 1.42905 * 116.99861 * 179.70609 * 5 4 3 7 7 C 1.50703 * 109.47167 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00097 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99758 * 180.02562 * 7 6 5 10 10 C 1.47020 * 125.65281 * 359.95767 * 9 7 6 11 11 C 1.54316 * 107.27568 * 178.97789 * 10 9 7 12 12 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 13 13 H 1.08998 * 111.00511 * 277.42784 * 12 11 10 14 14 C 1.52997 * 111.03856 * 153.58832 * 12 11 10 15 15 C 1.53000 * 109.47309 * 181.33193 * 14 12 11 16 16 N 1.46504 * 109.47503 * 180.02562 * 15 14 12 17 17 C 1.36936 * 119.99990 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00122 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99453 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99646 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00370 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47249 * 89.99831 * 21 19 17 23 23 H 1.48494 * 109.47362 * 209.99860 * 21 19 17 24 24 H 1.48498 * 109.47175 * 329.99891 * 21 19 17 25 25 C 1.47422 * 125.64527 * 180.02562 * 9 7 6 26 26 N 1.30610 * 106.24592 * 359.64574 * 4 3 2 27 27 O 1.20921 * 111.49511 * 0.22702 * 26 4 3 28 28 H 1.09003 * 109.46810 * 180.26302 * 1 2 3 29 29 H 1.09002 * 109.47526 * 300.25864 * 1 2 3 30 30 H 1.08998 * 109.47209 * 60.26065 * 1 2 3 31 31 H 1.08000 * 128.01419 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47096 * 59.99665 * 6 5 4 33 33 H 1.09000 * 109.46936 * 299.99450 * 6 5 4 34 34 H 1.09000 * 109.88493 * 59.55540 * 10 9 7 35 35 H 1.09005 * 110.00581 * 298.46850 * 10 9 7 36 36 H 1.09003 * 110.72312 * 219.44382 * 11 10 9 37 37 H 1.08999 * 110.87697 * 96.23821 * 11 10 9 38 38 H 1.08994 * 109.47315 * 301.33056 * 14 12 11 39 39 H 1.09007 * 109.46954 * 61.33678 * 14 12 11 40 40 H 1.09003 * 109.46990 * 300.00329 * 15 14 12 41 41 H 1.08998 * 109.47099 * 59.99888 * 15 14 12 42 42 H 0.97001 * 119.99341 * 359.97438 * 16 15 14 43 43 H 0.97005 * 120.00432 * 180.02562 * 20 19 17 44 44 H 1.08998 * 110.36873 * 85.25268 * 25 9 7 45 45 H 1.09005 * 110.36491 * 322.92676 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5355 -0.0027 5 8 4.7952 1.2217 -0.0054 6 6 5.9988 0.4513 -0.0013 7 6 7.1879 1.3770 -0.0057 8 8 7.0212 2.5783 -0.0122 9 7 8.4367 0.8700 -0.0034 10 6 8.7812 -0.5593 0.0041 11 6 10.3208 -0.6597 -0.0222 12 6 10.7483 0.7093 -0.6141 13 1 10.6883 0.7003 -1.7024 14 6 12.1539 1.0943 -0.1485 15 6 12.5255 2.4620 -0.7249 16 7 13.8717 2.8304 -0.2795 17 6 14.4207 4.0218 -0.6723 18 1 13.8612 4.6900 -1.3101 19 6 15.6961 4.3710 -0.2498 20 7 16.2236 5.5163 -0.6270 21 14 16.6629 3.2161 0.8550 22 1 17.4639 2.2862 0.0190 23 1 17.5707 4.0070 1.7242 24 1 15.7228 2.4370 1.7002 25 6 9.6834 1.6567 -0.0066 26 7 3.4765 -0.7621 0.0038 27 8 2.3084 -1.0749 0.0054 28 1 -0.3633 -1.0277 0.0047 29 1 -0.3634 0.5178 0.8876 30 1 -0.3633 0.5098 -0.8923 31 1 2.0311 2.1263 -0.0004 32 1 6.0281 -0.1816 -0.8883 33 1 6.0274 -0.1732 0.8917 34 1 8.3628 -1.0461 -0.8768 35 1 8.3942 -1.0314 0.9072 36 1 10.6431 -1.4766 -0.6679 37 1 10.7191 -0.7857 0.9846 38 1 12.1760 1.1408 0.9403 39 1 12.8686 0.3477 -0.4949 40 1 12.5034 2.4155 -1.8137 41 1 11.8108 3.2086 -0.3786 42 1 14.3737 2.2306 0.2942 43 1 17.1150 5.7602 -0.3321 44 1 9.9590 1.9350 1.0105 45 1 9.5691 2.5461 -0.6265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754918927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:01 Heat of formation + Delta-G solvation = 9.855946 kcal Electronic energy + Delta-G solvation = -26137.640997 eV Core-core repulsion = 22159.840790 eV Total energy + Delta-G solvation = -3977.800208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.31328 -40.55021 -39.18186 -37.74000 -35.37328 -34.29565 -33.18882 -32.92390 -31.34780 -29.87639 -29.45630 -28.30376 -26.97880 -24.37991 -23.83665 -22.94015 -21.80368 -21.26128 -20.33480 -19.64131 -18.40921 -18.28199 -17.58117 -17.27655 -17.19262 -16.72090 -16.13901 -15.57976 -14.92603 -14.56483 -14.38569 -14.25509 -14.08583 -13.94236 -13.79533 -13.74099 -13.36366 -13.12268 -12.98511 -12.82009 -12.72701 -12.39325 -12.11545 -11.90690 -11.74416 -11.55395 -11.30448 -10.92678 -10.76779 -10.58311 -10.40770 -10.12802 -10.09656 -9.96177 -9.63251 -9.57674 -8.93118 -8.88308 -7.22128 -5.75231 -3.10984 0.96691 1.84392 1.87067 2.25742 2.63340 2.98193 3.37563 3.39776 3.45515 3.74026 3.97835 4.30356 4.32411 4.46690 4.48479 4.52627 4.60015 4.61371 4.68031 4.73692 4.83503 4.92519 5.07655 5.12876 5.21047 5.24329 5.33840 5.45632 5.48742 5.56707 5.65091 5.67758 5.77377 5.85733 5.94018 6.04867 6.09580 6.23568 6.53276 6.72274 6.75386 7.15256 7.78003 7.83528 8.01442 8.43680 9.22861 9.95018 10.14681 11.43248 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.035874 B = 0.001782 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.325330 B =15711.781120 C =16280.594187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.007 4.007 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.256 6.256 6 C 0.052 3.948 7 C 0.530 3.470 8 O -0.514 6.514 9 N -0.615 5.615 10 C 0.095 3.905 11 C -0.128 4.128 12 C -0.094 4.094 13 H 0.088 0.912 14 C -0.119 4.119 15 C 0.154 3.846 16 N -0.757 5.757 17 C -0.245 4.245 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.111 3.889 26 N -0.412 5.412 27 O 0.098 5.902 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.180 0.820 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.076 0.924 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.666 -18.963 2.015 36.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.254 4.254 4 C 0.016 3.984 5 O -0.161 6.161 6 C -0.027 4.027 7 C 0.317 3.683 8 O -0.388 6.388 9 N -0.352 5.352 10 C -0.028 4.028 11 C -0.165 4.165 12 C -0.114 4.114 13 H 0.107 0.893 14 C -0.157 4.157 15 C 0.027 3.973 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.010 4.010 26 N -0.140 5.140 27 O 0.038 5.962 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.197 0.803 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -30.912 -18.749 1.907 36.204 hybrid contribution 0.713 -0.165 0.799 1.083 sum -30.199 -18.915 2.706 35.736 Atomic orbital electron populations 1.20401 0.83389 1.05007 1.04523 1.24366 0.96519 0.85502 1.00718 1.21815 0.88224 1.01858 1.13550 1.22050 0.88383 0.88054 0.99889 1.86287 1.09990 1.30756 1.89060 1.22437 0.82183 0.93416 1.04648 1.19481 0.82564 0.88649 0.77638 1.90796 1.84757 1.14999 1.48283 1.48383 1.05073 1.08322 1.73379 1.22163 0.97309 0.81560 1.01784 1.22719 0.92789 0.98338 1.02692 1.22348 0.94629 0.93571 1.00836 0.89326 1.21735 0.93956 0.98912 1.01084 1.20672 0.87363 0.92427 0.96844 1.42708 1.14761 1.22085 1.60723 1.19083 0.98447 0.94499 1.25448 0.89223 1.24686 0.97211 0.96953 1.00398 1.69707 1.16788 1.22225 1.49516 0.86517 0.80158 0.80668 0.80990 1.21104 1.21732 1.20382 1.22479 0.81250 0.95213 1.02049 1.74153 0.98026 1.14161 1.27709 1.84795 1.10273 1.32023 1.69109 0.89550 0.88775 0.88768 0.80278 0.88600 0.88640 0.91144 0.91170 0.89638 0.90064 0.91574 0.91201 0.95509 0.95431 0.80725 0.93076 0.90615 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 10.45 36.00 0.38 0.24 16 2 C -0.01 -0.05 7.48 -35.37 -0.26 -0.31 16 3 C -0.23 -1.88 11.10 -39.23 -0.44 -2.32 16 4 C 0.21 2.36 8.01 -16.66 -0.13 2.23 16 5 O -0.26 -3.27 9.74 -38.73 -0.38 -3.65 16 6 C 0.05 0.55 5.33 36.01 0.19 0.74 16 7 C 0.53 7.06 7.93 -10.98 -0.09 6.98 16 8 O -0.51 -9.18 16.75 -14.35 -0.24 -9.42 16 9 N -0.62 -7.01 3.33 -170.51 -0.57 -7.58 16 10 C 0.09 0.73 6.49 -3.07 -0.02 0.71 16 11 C -0.13 -1.02 6.42 -24.90 -0.16 -1.17 16 12 C -0.09 -1.03 3.07 -88.46 -0.27 -1.30 16 13 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 14 C -0.12 -1.63 4.85 -26.73 -0.13 -1.76 16 15 C 0.15 2.92 6.11 -4.04 -0.02 2.90 16 16 N -0.76 -18.18 5.41 -59.91 -0.32 -18.50 16 17 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 18 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 19 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 20 N -0.93 -29.82 13.97 55.49 0.78 -29.04 16 21 Si 0.89 22.27 27.73 -169.99 -4.71 17.56 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 25 C 0.11 1.41 5.57 -2.52 -0.01 1.39 16 26 N -0.41 -4.39 11.54 30.38 0.35 -4.04 16 27 O 0.10 0.86 11.19 17.06 0.19 1.05 16 28 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 29 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.48 16 39 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.03 0.54 7.45 -51.93 -0.39 0.16 16 42 H 0.36 8.33 5.53 -40.82 -0.23 8.11 16 43 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 44 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 45 H 0.09 1.25 7.96 -51.93 -0.41 0.83 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -37.34 378.24 -7.38 -44.71 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.94 Total: 2.15 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.23 Total: 1.07 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.23 Total: -59.16 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.43 Total: -12.02 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.34 -7.38 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754918927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.568 kcal (2) G-P(sol) polarization free energy of solvation -37.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds