Wall clock time and date at job start Tue Mar 31 2020 14:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35274 * 126.71271 * 2 1 4 4 C 1.41927 * 103.96155 * 180.11228 * 3 2 1 5 5 O 1.35706 * 126.87436 * 179.91361 * 4 3 2 6 6 C 1.42905 * 116.99861 * 179.70609 * 5 4 3 7 7 C 1.50703 * 109.47167 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00097 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99758 * 180.02562 * 7 6 5 10 10 C 1.47020 * 125.65281 * 359.95767 * 9 7 6 11 11 C 1.54316 * 107.27568 * 178.97789 * 10 9 7 12 12 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 13 13 H 1.08998 * 111.00511 * 277.42784 * 12 11 10 14 14 C 1.52997 * 111.03856 * 153.58832 * 12 11 10 15 15 C 1.53000 * 109.47309 * 181.33193 * 14 12 11 16 16 N 1.46504 * 109.47503 * 180.02562 * 15 14 12 17 17 C 1.36936 * 119.99990 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00122 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99453 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99646 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00370 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47249 * 89.99831 * 21 19 17 23 23 H 1.48494 * 109.47362 * 209.99860 * 21 19 17 24 24 H 1.48498 * 109.47175 * 329.99891 * 21 19 17 25 25 C 1.47422 * 125.64527 * 180.02562 * 9 7 6 26 26 N 1.30610 * 106.24592 * 359.64574 * 4 3 2 27 27 O 1.20921 * 111.49511 * 0.22702 * 26 4 3 28 28 H 1.09003 * 109.46810 * 180.26302 * 1 2 3 29 29 H 1.09002 * 109.47526 * 300.25864 * 1 2 3 30 30 H 1.08998 * 109.47209 * 60.26065 * 1 2 3 31 31 H 1.08000 * 128.01419 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47096 * 59.99665 * 6 5 4 33 33 H 1.09000 * 109.46936 * 299.99450 * 6 5 4 34 34 H 1.09000 * 109.88493 * 59.55540 * 10 9 7 35 35 H 1.09005 * 110.00581 * 298.46850 * 10 9 7 36 36 H 1.09003 * 110.72312 * 219.44382 * 11 10 9 37 37 H 1.08999 * 110.87697 * 96.23821 * 11 10 9 38 38 H 1.08994 * 109.47315 * 301.33056 * 14 12 11 39 39 H 1.09007 * 109.46954 * 61.33678 * 14 12 11 40 40 H 1.09003 * 109.46990 * 300.00329 * 15 14 12 41 41 H 1.08998 * 109.47099 * 59.99888 * 15 14 12 42 42 H 0.97001 * 119.99341 * 359.97438 * 16 15 14 43 43 H 0.97005 * 120.00432 * 180.02562 * 20 19 17 44 44 H 1.08998 * 110.36873 * 85.25268 * 25 9 7 45 45 H 1.09005 * 110.36491 * 322.92676 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5355 -0.0027 5 8 4.7952 1.2217 -0.0054 6 6 5.9988 0.4513 -0.0013 7 6 7.1879 1.3770 -0.0057 8 8 7.0212 2.5783 -0.0122 9 7 8.4367 0.8700 -0.0034 10 6 8.7812 -0.5593 0.0041 11 6 10.3208 -0.6597 -0.0222 12 6 10.7483 0.7093 -0.6141 13 1 10.6883 0.7003 -1.7024 14 6 12.1539 1.0943 -0.1485 15 6 12.5255 2.4620 -0.7249 16 7 13.8717 2.8304 -0.2795 17 6 14.4207 4.0218 -0.6723 18 1 13.8612 4.6900 -1.3101 19 6 15.6961 4.3710 -0.2498 20 7 16.2236 5.5163 -0.6270 21 14 16.6629 3.2161 0.8550 22 1 17.4639 2.2862 0.0190 23 1 17.5707 4.0070 1.7242 24 1 15.7228 2.4370 1.7002 25 6 9.6834 1.6567 -0.0066 26 7 3.4765 -0.7621 0.0038 27 8 2.3084 -1.0749 0.0054 28 1 -0.3633 -1.0277 0.0047 29 1 -0.3634 0.5178 0.8876 30 1 -0.3633 0.5098 -0.8923 31 1 2.0311 2.1263 -0.0004 32 1 6.0281 -0.1816 -0.8883 33 1 6.0274 -0.1732 0.8917 34 1 8.3628 -1.0461 -0.8768 35 1 8.3942 -1.0314 0.9072 36 1 10.6431 -1.4766 -0.6679 37 1 10.7191 -0.7857 0.9846 38 1 12.1760 1.1408 0.9403 39 1 12.8686 0.3477 -0.4949 40 1 12.5034 2.4155 -1.8137 41 1 11.8108 3.2086 -0.3786 42 1 14.3737 2.2306 0.2942 43 1 17.1150 5.7602 -0.3321 44 1 9.9590 1.9350 1.0105 45 1 9.5691 2.5461 -0.6265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754918927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:00 Heat of formation + Delta-G solvation = -17.536998 kcal Electronic energy + Delta-G solvation = -26138.828845 eV Core-core repulsion = 22159.840790 eV Total energy + Delta-G solvation = -3978.988055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.97553 -41.49888 -40.02946 -38.79147 -37.03693 -34.82047 -34.65277 -33.61296 -33.13516 -30.97128 -30.40489 -28.76464 -28.15937 -25.74495 -24.51080 -24.31346 -22.81610 -22.46995 -21.33900 -20.54574 -19.65016 -19.09986 -18.97006 -18.04601 -18.03389 -17.59694 -17.08576 -16.60476 -16.44480 -15.94270 -15.77281 -15.10098 -14.98957 -14.86528 -14.81951 -14.40698 -14.30448 -14.12033 -13.93350 -13.80560 -13.65994 -13.25195 -13.18547 -13.10315 -12.92869 -12.89389 -12.35195 -12.17412 -12.12910 -11.91278 -11.82351 -11.58252 -11.48881 -11.20692 -10.98141 -10.54371 -10.31064 -9.86842 -9.32561 -8.04986 -5.39702 0.41013 1.05888 1.14789 1.25644 1.36674 1.42133 1.49563 2.03963 2.28518 2.47586 3.04285 3.15862 3.26038 3.48064 3.56917 3.67572 3.78235 3.81197 3.87736 3.96691 3.98454 4.24394 4.27808 4.35864 4.43661 4.49012 4.54815 4.70030 4.75766 4.78820 4.79040 4.86217 4.88989 4.92568 5.03281 5.12373 5.22765 5.26614 5.32483 5.43027 5.72657 5.77079 6.18848 6.24533 6.81947 7.05972 7.17327 7.81228 8.02360 9.16759 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.035874 B = 0.001782 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.325330 B =15711.781120 C =16280.594187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.013 3.987 3 C -0.254 4.254 4 C 0.190 3.810 5 O -0.284 6.284 6 C 0.060 3.940 7 C 0.524 3.476 8 O -0.574 6.574 9 N -0.611 5.611 10 C 0.088 3.912 11 C -0.116 4.116 12 C -0.086 4.086 13 H 0.090 0.910 14 C -0.104 4.104 15 C 0.148 3.852 16 N -0.759 5.759 17 C -0.244 4.244 18 H 0.049 0.951 19 C -0.067 4.067 20 N -0.986 5.986 21 Si 0.964 3.036 22 H -0.274 1.274 23 H -0.296 1.296 24 H -0.247 1.247 25 C 0.107 3.893 26 N -0.428 5.428 27 O 0.093 5.907 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.193 0.807 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.021 0.979 41 H 0.014 0.986 42 H 0.369 0.631 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.067 -23.099 3.116 40.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 C -0.276 4.276 4 C -0.007 4.007 5 O -0.190 6.190 6 C -0.018 4.018 7 C 0.312 3.688 8 O -0.453 6.453 9 N -0.345 5.345 10 C -0.033 4.033 11 C -0.153 4.153 12 C -0.106 4.106 13 H 0.109 0.891 14 C -0.142 4.142 15 C 0.022 3.978 16 N -0.405 5.405 17 C -0.375 4.375 18 H 0.067 0.933 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.790 3.210 22 H -0.199 1.199 23 H -0.223 1.223 24 H -0.172 1.172 25 C -0.015 4.015 26 N -0.156 5.156 27 O 0.033 5.967 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.210 0.790 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.202 0.798 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -32.346 -22.975 3.006 39.789 hybrid contribution 1.015 1.183 0.380 1.605 sum -31.331 -21.792 3.385 38.315 Atomic orbital electron populations 1.20689 0.79888 1.06518 1.06118 1.25117 0.98023 0.84031 0.97866 1.22160 0.87466 1.03200 1.14751 1.22422 0.88543 0.88685 1.01090 1.86235 1.11034 1.32179 1.89546 1.22453 0.80493 0.92441 1.06397 1.20064 0.83755 0.88314 0.76626 1.90759 1.85721 1.17576 1.51287 1.48465 1.04096 1.10034 1.71926 1.22505 0.97536 0.79138 1.04103 1.22732 0.92533 0.96590 1.03490 1.22230 0.92185 0.95198 1.00961 0.89122 1.21599 0.95849 0.95619 1.01129 1.20873 0.84744 0.95462 0.96736 1.42694 1.16455 1.20535 1.60782 1.19054 0.98388 0.95649 1.24388 0.93314 1.25638 0.98521 0.99024 1.02654 1.69913 1.17310 1.24835 1.51530 0.85279 0.78515 0.78350 0.78835 1.19936 1.22258 1.17171 1.22406 0.82829 0.95155 1.01158 1.74123 0.99070 1.14021 1.28403 1.84751 1.10082 1.32868 1.68972 0.88099 0.87004 0.87025 0.78965 0.86684 0.86646 0.88900 0.88816 0.87012 0.89174 0.90962 0.89550 0.96067 0.96799 0.79784 0.93258 0.91361 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.04 10.45 71.23 0.74 0.70 16 2 C 0.01 0.14 7.48 25.00 0.19 0.33 16 3 C -0.25 -3.96 11.10 22.50 0.25 -3.71 16 4 C 0.19 4.16 8.01 85.79 0.69 4.85 16 5 O -0.28 -7.43 9.74 -71.23 -0.69 -8.12 16 6 C 0.06 1.23 5.33 71.24 0.38 1.61 16 7 C 0.52 14.20 7.93 87.66 0.69 14.90 16 8 O -0.57 -21.84 16.75 16.01 0.27 -21.57 16 9 N -0.61 -13.42 3.33 -811.75 -2.70 -16.12 16 10 C 0.09 1.06 6.49 86.73 0.56 1.63 16 11 C -0.12 -1.37 6.42 31.78 0.20 -1.16 16 12 C -0.09 -1.72 3.07 -9.39 -0.03 -1.75 16 13 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 14 C -0.10 -2.63 4.85 30.59 0.15 -2.48 16 15 C 0.15 5.63 6.11 86.38 0.53 6.15 16 16 N -0.76 -36.12 5.41 -343.44 -1.86 -37.97 16 17 C -0.24 -14.49 10.47 84.03 0.88 -13.61 16 18 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 20 N -0.99 -64.81 13.97 21.65 0.30 -64.51 16 21 Si 0.96 45.66 27.73 68.60 1.90 47.56 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 25 C 0.11 2.72 5.57 86.87 0.48 3.20 16 26 N -0.43 -8.77 11.54 -172.62 -1.99 -10.76 16 27 O 0.09 1.51 11.19 71.22 0.80 2.31 16 28 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.97 8.04 -2.39 -0.02 0.95 16 38 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.01 0.57 7.45 -2.39 -0.02 0.55 16 42 H 0.37 16.20 5.53 -92.71 -0.51 15.69 16 43 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 44 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 45 H 0.05 1.71 7.96 -2.38 -0.02 1.69 16 Total: -1.00 -86.68 378.24 2.64 -84.04 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.42 Total: 18.07 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.19 Total: 7.07 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -6.25 Total: -129.36 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: 0.37 Total: -27.39 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -86.68 2.64 -84.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754918927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.502 kcal (2) G-P(sol) polarization free energy of solvation -86.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds