Wall clock time and date at job start Tue Mar 31 2020 14:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35448 * 126.77692 * 2 1 4 4 C 1.41374 * 103.98647 * 180.09293 * 3 2 1 5 5 C 1.50707 * 126.80361 * 179.88461 * 4 3 2 6 6 O 1.42897 * 109.46732 * 359.71158 * 5 4 3 7 7 C 1.42900 * 113.99653 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47042 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99973 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99808 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99670 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46991 * 180.85304 * 11 10 8 13 13 N 1.46495 * 112.85135 * 292.11253 * 12 11 10 14 14 C 1.36938 * 120.00001 * 294.88327 * 13 12 11 15 15 H 1.08004 * 119.99919 * 353.69316 * 14 13 12 16 16 C 1.38808 * 120.00343 * 173.69092 * 14 13 12 17 17 N 1.31616 * 120.00024 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00258 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46945 * 59.99751 * 18 16 14 20 20 H 1.48493 * 109.47312 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46833 * 300.00097 * 18 16 14 22 22 C 1.53777 * 113.61419 * 160.91220 * 12 11 10 23 23 C 1.53955 * 87.02017 * 220.05234 * 22 12 11 24 24 C 1.53777 * 87.11385 * 25.36283 * 23 22 12 25 25 N 1.30177 * 106.39636 * 359.62297 * 4 3 2 26 26 O 1.20921 * 111.60276 * 0.23982 * 25 4 3 27 27 H 1.09004 * 109.46894 * 180.30071 * 1 2 3 28 28 H 1.08998 * 109.47449 * 300.30798 * 1 2 3 29 29 H 1.08998 * 109.46986 * 60.31315 * 1 2 3 30 30 H 1.08001 * 128.00415 * 359.94969 * 3 2 1 31 31 H 1.08994 * 109.46995 * 239.70965 * 5 4 3 32 32 H 1.08996 * 109.46850 * 119.70490 * 5 4 3 33 33 H 1.09004 * 109.47196 * 60.00342 * 7 6 5 34 34 H 1.08999 * 109.47607 * 299.99455 * 7 6 5 35 35 H 0.96994 * 120.00502 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47183 * 300.85612 * 11 10 8 37 37 H 1.09003 * 109.47202 * 60.85809 * 11 10 8 38 38 H 0.97001 * 120.00607 * 114.88431 * 13 12 11 39 39 H 0.97002 * 120.00462 * 179.97438 * 17 16 14 40 40 H 1.09003 * 113.61748 * 334.56959 * 22 12 11 41 41 H 1.09003 * 113.61469 * 105.47089 * 22 12 11 42 42 H 1.09005 * 113.53624 * 270.81143 * 23 22 12 43 43 H 1.09002 * 113.66842 * 139.93944 * 23 22 12 44 44 H 1.09001 * 113.61613 * 220.09395 * 24 23 22 45 45 H 1.08997 * 113.61745 * 89.18715 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 -0.0022 5 6 4.9211 1.3000 -0.0056 6 8 4.6499 2.7030 -0.0131 7 6 5.8214 3.5213 -0.0162 8 6 5.4195 4.9738 -0.0247 9 8 4.2456 5.2782 -0.0273 10 7 6.3648 5.9345 -0.0294 11 6 5.9741 7.3465 -0.0371 12 6 7.2282 8.2225 -0.0627 13 7 8.0030 8.1432 1.1781 14 6 7.4673 8.6056 2.3505 15 1 6.5178 9.1203 2.3444 16 6 8.1446 8.4128 3.5467 17 7 9.3019 7.7860 3.5541 18 14 7.4135 9.0430 5.1461 19 1 6.0937 8.4016 5.3736 20 1 8.3252 8.7133 6.2709 21 1 7.2407 10.5157 5.0649 22 6 6.9643 9.6625 -0.5332 23 6 8.2914 9.5672 -1.3077 24 6 8.0781 8.0445 -1.3320 25 7 3.4763 -0.7564 0.0049 26 8 2.3095 -1.0736 0.0063 27 1 -0.3633 -1.0277 0.0054 28 1 -0.3634 0.5186 0.8872 29 1 -0.3633 0.5090 -0.8928 30 1 2.0344 2.1270 -0.0007 31 1 5.4949 1.0361 -0.8939 32 1 5.4940 1.0455 0.8860 33 1 6.4143 3.3036 -0.9046 34 1 6.4127 3.3129 0.8754 35 1 7.3037 5.6911 -0.0270 36 1 5.3696 7.5514 -0.9206 37 1 5.3945 7.5680 0.8591 38 1 8.8954 7.7632 1.1693 39 1 9.7754 7.6516 4.3900 40 1 6.0894 9.7583 -1.1763 41 1 6.9801 10.3953 0.2736 42 1 9.1587 9.8774 -0.7249 43 1 8.2562 10.0289 -2.2945 44 1 8.9918 7.4730 -1.1691 45 1 7.5083 7.6971 -2.1937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754981969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:22 Heat of formation + Delta-G solvation = 15.408036 kcal Electronic energy + Delta-G solvation = -26773.957945 eV Core-core repulsion = 22796.398494 eV Total energy + Delta-G solvation = -3977.559451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.10501 -39.68656 -38.70951 -37.61050 -34.41351 -33.92159 -33.54370 -33.29913 -30.17775 -29.33231 -28.01069 -27.46065 -25.89795 -25.32341 -23.79551 -23.07502 -21.76136 -20.67828 -20.05511 -18.29114 -17.89896 -17.60647 -17.22271 -16.87310 -16.63713 -16.39780 -15.38130 -15.06868 -14.91159 -14.55934 -14.39303 -14.07163 -13.85327 -13.74861 -13.56440 -13.29693 -13.07598 -12.96637 -12.61667 -12.50852 -11.99996 -11.97453 -11.77157 -11.35850 -11.26612 -11.04290 -10.86202 -10.50355 -10.40582 -10.28989 -10.14444 -9.80161 -9.76720 -9.56788 -9.47073 -9.46363 -8.91201 -8.55498 -7.08640 -5.86563 -3.16490 1.26344 2.04356 2.71329 2.91890 2.94788 3.40105 3.44908 3.46231 3.74727 4.22037 4.49156 4.51882 4.81963 4.84544 4.99811 5.01201 5.07733 5.09616 5.14145 5.14698 5.20478 5.22588 5.23639 5.27135 5.40177 5.48362 5.50083 5.60460 5.74357 5.94213 5.99918 6.09150 6.15750 6.28659 6.35342 6.50029 6.67332 6.74571 6.87031 6.93741 7.02687 7.66045 7.90515 8.05112 8.32340 8.57043 9.43659 9.96748 10.32005 11.35336 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.002522 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.624922 B =11100.495116 C =12102.602440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.204 4.204 4 C 0.020 3.980 5 C 0.142 3.858 6 O -0.356 6.356 7 C 0.046 3.954 8 C 0.511 3.489 9 O -0.533 6.533 10 N -0.703 5.703 11 C 0.122 3.878 12 C 0.174 3.826 13 N -0.699 5.699 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.008 4.008 17 N -0.932 5.932 18 Si 0.905 3.095 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.151 4.151 23 C -0.129 4.129 24 C -0.144 4.144 25 N -0.363 5.363 26 O 0.099 5.901 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.179 0.821 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.401 0.599 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 -12.152 -11.378 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.225 4.225 4 C -0.138 4.138 5 C 0.064 3.936 6 O -0.273 6.273 7 C -0.034 4.034 8 C 0.296 3.704 9 O -0.410 6.410 10 N -0.354 5.354 11 C -0.003 4.003 12 C 0.080 3.920 13 N -0.340 5.340 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.736 3.264 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.191 4.191 23 C -0.166 4.166 24 C -0.182 4.182 25 N -0.069 5.069 26 O 0.032 5.968 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.196 0.804 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.235 0.765 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.919 -12.810 -11.196 19.693 hybrid contribution 0.411 0.793 1.082 1.404 sum -9.508 -12.017 -10.114 18.360 Atomic orbital electron populations 1.20330 0.83863 1.04473 1.04313 1.24543 0.96452 0.85968 1.03517 1.22465 0.90682 1.01567 1.07799 1.23136 0.97216 0.90063 1.03370 1.20319 0.90334 0.80809 1.02094 1.87941 1.29419 1.14386 1.95587 1.22269 0.88300 0.89905 1.02964 1.19994 0.86375 0.86686 0.77395 1.90690 1.17890 1.83291 1.49131 1.45634 1.09350 1.06450 1.73957 1.21881 0.98346 0.79035 1.01086 1.20820 0.90569 0.93181 0.87383 1.42058 1.16590 1.73525 1.01831 1.19055 1.03675 1.29458 0.84576 0.91172 1.24721 0.97236 1.00835 0.97617 1.69636 1.15231 1.46825 1.26240 0.86307 0.78184 0.78522 0.83432 1.21167 1.21725 1.21207 1.23344 0.96460 0.99527 0.99772 1.22664 0.98879 0.95866 0.99208 1.23142 1.00100 0.97219 0.97772 1.73766 0.97363 1.15331 1.20449 1.84799 1.11051 1.33209 1.67756 0.90000 0.89068 0.89113 0.80407 0.90723 0.90582 0.90161 0.89703 0.76498 0.92639 0.91238 0.77924 0.93424 0.91291 0.90678 0.90037 0.92712 0.91647 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.45 36.00 0.38 -0.02 16 2 C -0.04 -0.41 7.49 -35.30 -0.26 -0.67 16 3 C -0.20 -2.42 10.45 -39.39 -0.41 -2.83 16 4 C 0.02 0.26 7.28 -82.10 -0.60 -0.34 16 5 C 0.14 1.62 6.56 36.01 0.24 1.85 16 6 O -0.36 -4.98 9.37 -55.14 -0.52 -5.50 16 7 C 0.05 0.57 6.42 36.01 0.23 0.80 16 8 C 0.51 8.52 7.91 -10.98 -0.09 8.43 16 9 O -0.53 -11.03 16.50 -14.35 -0.24 -11.27 16 10 N -0.70 -11.31 5.42 -60.29 -0.33 -11.63 16 11 C 0.12 2.18 5.08 -4.04 -0.02 2.16 16 12 C 0.17 3.08 0.80 -131.01 -0.10 2.97 16 13 N -0.70 -15.57 5.18 -46.48 -0.24 -15.81 16 14 C -0.24 -6.10 9.04 -15.06 -0.14 -6.24 16 15 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 17 N -0.93 -26.53 13.07 55.49 0.73 -25.80 16 18 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.15 -2.50 7.29 -25.83 -0.19 -2.69 16 23 C -0.13 -1.93 8.00 -25.83 -0.21 -2.13 16 24 C -0.14 -2.10 7.05 -25.92 -0.18 -2.28 16 25 N -0.36 -4.78 12.07 33.42 0.40 -4.38 16 26 O 0.10 1.16 11.20 17.18 0.19 1.35 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.18 2.12 8.05 -52.49 -0.42 1.70 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 5.82 8.31 -40.82 -0.34 5.48 16 36 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 37 H 0.07 1.47 7.80 -51.93 -0.41 1.06 16 38 H 0.39 9.16 7.87 -40.82 -0.32 8.84 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 41 H 0.07 1.40 7.87 -51.93 -0.41 1.00 16 42 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 45 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -32.69 384.53 -7.60 -40.29 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.92 Total: 11.36 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.45 Total: -1.29 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.56 Total: -57.62 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.56 Total: -15.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.69 -7.60 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754981969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.697 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds