Wall clock time and date at job start Tue Mar 31 2020 14:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00359 * 2 1 4 4 H 1.48504 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46544 * 299.99372 * 3 2 1 6 6 H 1.48493 * 109.47300 * 59.99344 * 3 2 1 7 7 C 1.38817 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99500 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00457 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47455 * 175.02607 * 10 9 7 12 12 N 1.46493 * 109.54312 * 305.58223 * 11 10 9 13 13 C 1.34782 * 120.00368 * 304.09536 * 12 11 10 14 14 O 1.21282 * 119.99733 * 354.69179 * 13 12 11 15 15 C 1.50692 * 120.00099 * 174.69659 * 13 12 11 16 16 C 1.53002 * 109.47117 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47476 * 179.97438 * 16 15 13 18 18 C 1.41368 * 126.80323 * 124.99751 * 17 16 15 19 19 C 1.35453 * 103.98511 * 180.02562 * 18 17 16 20 20 O 1.34033 * 106.44586 * 0.02562 * 19 18 17 21 21 N 1.20921 * 111.56746 * 359.70505 * 20 19 18 22 22 C 1.53178 * 109.54400 * 65.76152 * 11 10 9 23 23 C 1.53277 * 109.06484 * 176.85039 * 22 11 10 24 24 O 1.42907 * 109.45887 * 302.44836 * 23 22 11 25 25 C 1.42902 * 114.10151 * 61.15666 * 24 23 22 26 26 C 1.53093 * 109.41392 * 298.84320 * 25 24 23 27 27 H 0.97003 * 119.99257 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00311 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46684 * 55.02114 * 10 9 7 30 30 H 1.09001 * 109.46950 * 295.02945 * 10 9 7 31 31 H 0.97003 * 120.00249 * 124.09352 * 12 11 10 32 32 H 1.09004 * 109.47474 * 60.00104 * 15 13 12 33 33 H 1.08998 * 109.47423 * 299.99960 * 15 13 12 34 34 H 1.09004 * 109.46724 * 59.99816 * 16 15 13 35 35 H 1.08998 * 109.47081 * 300.00340 * 16 15 13 36 36 H 1.08005 * 128.00878 * 359.97091 * 18 17 16 37 37 H 1.08010 * 126.77479 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.52247 * 296.84232 * 22 11 10 39 39 H 1.09004 * 109.52223 * 57.03148 * 22 11 10 40 40 H 1.08991 * 109.46138 * 182.44768 * 23 22 11 41 41 H 1.09008 * 109.46827 * 62.44472 * 23 22 11 42 42 H 1.08997 * 109.47990 * 178.85635 * 25 24 23 43 43 H 1.09006 * 109.48793 * 58.83002 * 25 24 23 44 44 H 1.08998 * 109.51835 * 297.69817 * 26 25 24 45 45 H 1.08995 * 109.56967 * 177.54742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3962 -1.2126 6 1 1.8915 2.3965 1.2123 7 6 2.0102 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0682 -4.8170 0.1256 12 7 0.2259 -4.6174 1.3074 13 6 0.7927 -4.4544 2.5193 14 8 1.9933 -4.5687 2.6475 15 6 -0.0652 -4.1302 3.7150 16 6 0.8190 -3.9989 4.9567 17 6 -0.0388 -3.6741 6.1524 18 6 -0.0973 -4.3873 7.3716 19 6 -1.0050 -3.7029 8.1080 20 8 -1.4195 -2.6814 7.3456 21 7 -0.8696 -2.6788 6.2687 22 6 0.1881 -4.8771 -1.1267 23 6 -0.7447 -6.0891 -1.0254 24 8 0.0339 -7.2773 -0.8699 25 6 0.8414 -7.2958 0.3089 26 6 1.8377 -6.1344 0.2615 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.7496 -3.6770 0.8426 30 1 2.6160 -3.7542 -0.9306 31 1 -0.7399 -4.6024 1.2178 32 1 -0.7907 -4.9291 3.8690 33 1 -0.5904 -3.1910 3.5415 34 1 1.5448 -3.2003 4.8030 35 1 1.3439 -4.9384 5.1300 36 1 0.4536 -5.2734 7.6508 37 1 -1.3311 -3.9351 9.1112 38 1 -0.4034 -3.9646 -1.2003 39 1 0.8185 -4.9759 -2.0105 40 1 -1.3437 -6.1631 -1.9329 41 1 -1.4025 -5.9703 -0.1643 42 1 1.3848 -8.2391 0.3625 43 1 0.2046 -7.1927 1.1876 44 1 2.5013 -6.2587 -0.5943 45 1 2.4256 -6.1200 1.1792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755096570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:33 Heat of formation + Delta-G solvation = -10.963885 kcal Electronic energy + Delta-G solvation = -28438.264310 eV Core-core repulsion = 24459.561286 eV Total energy + Delta-G solvation = -3978.703023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.99107 -40.46917 -38.43685 -35.93867 -35.11804 -33.62956 -32.35682 -31.71734 -31.05496 -30.78780 -30.33841 -26.59547 -25.39089 -23.73170 -23.33899 -23.20607 -21.53258 -21.20061 -20.17393 -18.97730 -17.92945 -17.58711 -17.21387 -16.89921 -16.01476 -15.89605 -15.51648 -15.34172 -14.91772 -14.58919 -14.30115 -13.97480 -13.82159 -13.45747 -13.31236 -13.02776 -12.75867 -12.59086 -12.34883 -12.23597 -12.16634 -11.83202 -11.54356 -11.49610 -11.16955 -10.92128 -10.88839 -10.80405 -10.49462 -10.30647 -10.09778 -10.01350 -9.72892 -9.68093 -9.50120 -9.22111 -8.77441 -8.53553 -6.84232 -5.73112 -2.99290 1.43387 2.16879 3.04213 3.19384 3.45945 3.50488 3.52700 3.54471 3.95552 4.15577 4.46273 4.62321 4.80873 4.97441 5.01868 5.05300 5.09587 5.13859 5.16862 5.17463 5.29613 5.38397 5.45065 5.54085 5.62799 5.65175 5.75139 5.78908 5.89133 5.95287 6.05471 6.08955 6.12605 6.17032 6.26868 6.31810 6.48711 6.56892 6.89177 7.08720 7.26124 7.76145 7.89047 8.24769 8.46446 8.63921 9.58172 10.15235 10.51068 11.50164 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007383 B = 0.005075 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3791.453918 B = 5516.096447 C = 8483.391022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.230 4.230 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.142 3.858 11 C 0.175 3.825 12 N -0.714 5.714 13 C 0.529 3.471 14 O -0.535 6.535 15 C -0.136 4.136 16 C -0.024 4.024 17 C 0.019 3.981 18 C -0.232 4.232 19 C -0.067 4.067 20 O 0.099 5.901 21 N -0.356 5.356 22 C -0.155 4.155 23 C 0.061 3.939 24 O -0.386 6.386 25 C 0.067 3.933 26 C -0.163 4.163 27 H 0.253 0.747 28 H 0.381 0.619 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.395 0.605 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.170 0.830 37 H 0.214 0.786 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 -15.857 10.896 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.361 4.361 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.014 3.986 11 C 0.089 3.911 12 N -0.366 5.366 13 C 0.316 3.684 14 O -0.412 6.412 15 C -0.176 4.176 16 C -0.062 4.062 17 C -0.140 4.140 18 C -0.254 4.254 19 C -0.149 4.149 20 O 0.032 5.968 21 N -0.059 5.059 22 C -0.193 4.193 23 C -0.016 4.016 24 O -0.305 6.305 25 C -0.010 4.010 26 C -0.202 4.202 27 H 0.063 0.937 28 H 0.215 0.785 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.229 0.771 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.188 0.812 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.550 -14.943 10.029 18.343 hybrid contribution 0.006 0.625 0.616 0.878 sum -3.544 -14.318 10.645 18.190 Atomic orbital electron populations 1.69650 1.05012 1.25342 1.58496 1.24668 0.95500 0.97473 1.03370 0.86149 0.78862 0.84335 0.77104 1.20631 1.21965 1.21970 1.19261 0.91026 0.84146 1.41705 0.91360 1.42203 1.05555 0.99695 1.89415 1.21073 0.93537 0.85009 0.98989 1.20558 0.91343 0.95237 0.83988 1.45925 1.09683 1.74142 1.06829 1.20231 0.88602 0.75609 0.84003 1.90620 1.15034 1.50252 1.85298 1.21590 0.98826 1.04422 0.92805 1.19714 0.95203 1.03999 0.87324 1.23766 0.99056 0.92957 0.98208 1.22768 1.03856 1.04537 0.94199 1.26014 0.98786 0.90294 0.99764 1.84878 1.51108 1.41688 1.19110 1.73943 1.10687 1.20859 1.00452 1.22473 0.99535 0.99357 0.97945 1.22631 0.92785 0.84743 1.01394 1.87893 1.59487 1.39173 1.43952 1.22503 0.92502 0.98632 0.87374 1.22549 0.98965 0.94067 1.04583 0.93737 0.78504 0.93241 0.96343 0.77145 0.89588 0.87941 0.88721 0.89054 0.81212 0.76936 0.89178 0.89589 0.88841 0.93569 0.89358 0.93537 0.90519 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.31 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.54 16 9 N -0.72 -18.24 5.21 -59.91 -0.31 -18.55 16 10 C 0.14 3.00 4.79 -4.04 -0.02 2.98 16 11 C 0.17 2.82 0.32 -131.64 -0.04 2.78 16 12 N -0.71 -10.84 3.75 -47.44 -0.18 -11.02 16 13 C 0.53 8.66 7.24 -10.99 -0.08 8.58 16 14 O -0.54 -10.22 12.29 5.56 0.07 -10.16 16 15 C -0.14 -1.89 5.68 -27.89 -0.16 -2.04 16 16 C -0.02 -0.33 5.10 -27.88 -0.14 -0.47 16 17 C 0.02 0.25 6.59 -82.10 -0.54 -0.29 16 18 C -0.23 -2.19 11.12 -39.39 -0.44 -2.63 16 19 C -0.07 -0.55 12.30 29.74 0.37 -0.18 16 20 O 0.10 1.21 11.20 17.19 0.19 1.40 16 21 N -0.36 -5.28 12.06 33.42 0.40 -4.87 16 22 C -0.16 -2.28 4.84 -26.50 -0.13 -2.41 16 23 C 0.06 0.75 6.67 37.30 0.25 1.00 16 24 O -0.39 -5.21 10.77 -35.23 -0.38 -5.59 16 25 C 0.07 0.83 6.68 37.21 0.25 1.08 16 26 C -0.16 -2.34 4.82 -26.59 -0.13 -2.47 16 27 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.38 9.82 6.51 -40.82 -0.27 9.55 16 29 H 0.05 1.16 6.25 -51.93 -0.32 0.83 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.39 5.20 7.41 -40.82 -0.30 4.90 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.09 1.51 8.10 -51.93 -0.42 1.09 16 35 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.21 0.70 8.06 -52.48 -0.42 0.27 16 38 H 0.09 1.47 7.22 -51.93 -0.37 1.09 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.51 7.02 -51.92 -0.36 0.15 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.48 6.26 -51.93 -0.32 1.15 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -34.76 364.69 -6.62 -41.38 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.55 Total: 12.74 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.06 Total: -1.35 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.64 Total: -62.02 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.12 Total: -14.35 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.76 -6.62 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755096570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.413 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds