Wall clock time and date at job start Tue Mar 31 2020 14:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00359 * 2 1 4 4 H 1.48504 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46544 * 299.99372 * 3 2 1 6 6 H 1.48493 * 109.47300 * 59.99344 * 3 2 1 7 7 C 1.38817 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99500 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00457 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47455 * 175.02607 * 10 9 7 12 12 N 1.46493 * 109.54312 * 305.58223 * 11 10 9 13 13 C 1.34782 * 120.00368 * 304.09536 * 12 11 10 14 14 O 1.21282 * 119.99733 * 354.69179 * 13 12 11 15 15 C 1.50692 * 120.00099 * 174.69659 * 13 12 11 16 16 C 1.53002 * 109.47117 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47476 * 179.97438 * 16 15 13 18 18 C 1.41368 * 126.80323 * 124.99751 * 17 16 15 19 19 C 1.35453 * 103.98511 * 180.02562 * 18 17 16 20 20 O 1.34033 * 106.44586 * 0.02562 * 19 18 17 21 21 N 1.20921 * 111.56746 * 359.70505 * 20 19 18 22 22 C 1.53178 * 109.54400 * 65.76152 * 11 10 9 23 23 C 1.53277 * 109.06484 * 176.85039 * 22 11 10 24 24 O 1.42907 * 109.45887 * 302.44836 * 23 22 11 25 25 C 1.42902 * 114.10151 * 61.15666 * 24 23 22 26 26 C 1.53093 * 109.41392 * 298.84320 * 25 24 23 27 27 H 0.97003 * 119.99257 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00311 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46684 * 55.02114 * 10 9 7 30 30 H 1.09001 * 109.46950 * 295.02945 * 10 9 7 31 31 H 0.97003 * 120.00249 * 124.09352 * 12 11 10 32 32 H 1.09004 * 109.47474 * 60.00104 * 15 13 12 33 33 H 1.08998 * 109.47423 * 299.99960 * 15 13 12 34 34 H 1.09004 * 109.46724 * 59.99816 * 16 15 13 35 35 H 1.08998 * 109.47081 * 300.00340 * 16 15 13 36 36 H 1.08005 * 128.00878 * 359.97091 * 18 17 16 37 37 H 1.08010 * 126.77479 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.52247 * 296.84232 * 22 11 10 39 39 H 1.09004 * 109.52223 * 57.03148 * 22 11 10 40 40 H 1.08991 * 109.46138 * 182.44768 * 23 22 11 41 41 H 1.09008 * 109.46827 * 62.44472 * 23 22 11 42 42 H 1.08997 * 109.47990 * 178.85635 * 25 24 23 43 43 H 1.09006 * 109.48793 * 58.83002 * 25 24 23 44 44 H 1.08998 * 109.51835 * 297.69817 * 26 25 24 45 45 H 1.08995 * 109.56967 * 177.54742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3962 -1.2126 6 1 1.8915 2.3965 1.2123 7 6 2.0102 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0682 -4.8170 0.1256 12 7 0.2259 -4.6174 1.3074 13 6 0.7927 -4.4544 2.5193 14 8 1.9933 -4.5687 2.6475 15 6 -0.0652 -4.1302 3.7150 16 6 0.8190 -3.9989 4.9567 17 6 -0.0388 -3.6741 6.1524 18 6 -0.0973 -4.3873 7.3716 19 6 -1.0050 -3.7029 8.1080 20 8 -1.4195 -2.6814 7.3456 21 7 -0.8696 -2.6788 6.2687 22 6 0.1881 -4.8771 -1.1267 23 6 -0.7447 -6.0891 -1.0254 24 8 0.0339 -7.2773 -0.8699 25 6 0.8414 -7.2958 0.3089 26 6 1.8377 -6.1344 0.2615 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.7496 -3.6770 0.8426 30 1 2.6160 -3.7542 -0.9306 31 1 -0.7399 -4.6024 1.2178 32 1 -0.7907 -4.9291 3.8690 33 1 -0.5904 -3.1910 3.5415 34 1 1.5448 -3.2003 4.8030 35 1 1.3439 -4.9384 5.1300 36 1 0.4536 -5.2734 7.6508 37 1 -1.3311 -3.9351 9.1112 38 1 -0.4034 -3.9646 -1.2003 39 1 0.8185 -4.9759 -2.0105 40 1 -1.3437 -6.1631 -1.9329 41 1 -1.4025 -5.9703 -0.1643 42 1 1.3848 -8.2391 0.3625 43 1 0.2046 -7.1927 1.1876 44 1 2.5013 -6.2587 -0.5943 45 1 2.4256 -6.1200 1.1792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755096570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:32 Heat of formation + Delta-G solvation = -36.122875 kcal Electronic energy + Delta-G solvation = -28439.355285 eV Core-core repulsion = 24459.561286 eV Total energy + Delta-G solvation = -3979.793999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.88277 -41.75401 -39.63463 -37.33548 -36.21672 -35.46177 -33.54780 -32.85877 -32.37919 -32.04814 -31.74636 -28.23099 -26.59988 -25.39345 -24.60772 -24.04118 -23.08971 -22.25421 -21.23453 -20.32702 -19.29072 -18.85904 -18.50187 -18.07896 -17.20609 -17.02477 -16.85028 -16.63278 -16.32892 -15.83121 -15.62121 -15.34861 -15.19620 -14.96234 -14.67773 -14.21389 -14.15483 -13.92982 -13.57394 -13.44045 -13.27971 -13.15826 -13.06015 -12.85129 -12.80330 -12.56774 -12.30831 -12.11671 -11.98125 -11.94828 -11.66260 -11.37641 -11.05859 -10.97983 -10.65930 -10.54101 -10.43132 -9.88524 -8.98181 -7.99094 -5.24781 0.68878 1.31499 1.40678 1.42034 1.51412 1.71562 2.24621 2.51559 2.56165 2.96390 3.25244 3.34652 3.54913 3.62692 3.77010 3.84446 3.86559 4.00991 4.09843 4.20161 4.24734 4.27443 4.32501 4.45200 4.51616 4.62051 4.68032 4.75713 4.76208 4.80330 4.86023 4.86243 4.94789 5.05086 5.08731 5.11268 5.14811 5.20915 5.23206 5.43950 5.66276 6.23860 6.24861 6.62786 7.31485 7.34767 7.43755 8.05578 8.33749 9.23940 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007383 B = 0.005075 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3791.453918 B = 5516.096447 C = 8483.391022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.062 0.938 9 N -0.727 5.727 10 C 0.143 3.857 11 C 0.180 3.820 12 N -0.707 5.707 13 C 0.523 3.477 14 O -0.566 6.566 15 C -0.125 4.125 16 C -0.018 4.018 17 C 0.000 4.000 18 C -0.236 4.236 19 C -0.046 4.046 20 O 0.088 5.912 21 N -0.405 5.405 22 C -0.149 4.149 23 C 0.066 3.934 24 O -0.392 6.392 25 C 0.072 3.928 26 C -0.155 4.155 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.025 0.975 30 H 0.015 0.985 31 H 0.406 0.594 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.200 0.800 37 H 0.265 0.735 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.110 0.890 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 -17.722 12.102 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.374 4.374 8 H 0.080 0.920 9 N -0.371 5.371 10 C 0.016 3.984 11 C 0.094 3.906 12 N -0.359 5.359 13 C 0.310 3.690 14 O -0.445 6.445 15 C -0.165 4.165 16 C -0.056 4.056 17 C -0.158 4.158 18 C -0.257 4.257 19 C -0.127 4.127 20 O 0.022 5.978 21 N -0.110 5.110 22 C -0.187 4.187 23 C -0.010 4.010 24 O -0.311 6.311 25 C -0.005 4.005 26 C -0.195 4.195 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.242 0.758 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.217 0.783 37 H 0.281 0.719 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.412 -16.834 11.223 20.708 hybrid contribution 0.320 1.188 0.296 1.265 sum -4.092 -15.646 11.520 19.856 Atomic orbital electron populations 1.69775 1.06138 1.25811 1.59552 1.25383 0.96392 1.00420 1.03777 0.85198 0.78111 0.80436 0.76809 1.19763 1.21430 1.22259 1.19534 0.91043 0.85696 1.41089 0.92006 1.42251 1.05410 1.00270 1.89123 1.21118 0.94339 0.85450 0.97518 1.20418 0.90980 0.94046 0.85182 1.45870 1.10229 1.73549 1.06256 1.20704 0.88484 0.74955 0.84816 1.90607 1.16430 1.51625 1.85832 1.21518 0.98861 1.04284 0.91873 1.19589 0.94725 1.03480 0.87849 1.23871 0.99071 0.93651 0.99222 1.23127 1.04519 1.05431 0.92640 1.26974 0.97043 0.87951 1.00737 1.84814 1.51102 1.43029 1.18872 1.73950 1.12365 1.22489 1.02184 1.22397 0.99461 1.00105 0.96731 1.22688 0.92140 0.83008 1.03190 1.87901 1.59592 1.39285 1.44345 1.22544 0.92082 0.98380 0.87449 1.22471 0.99259 0.93845 1.03876 0.94035 0.78966 0.95691 0.96729 0.75819 0.86187 0.90249 0.92296 0.87331 0.78317 0.71893 0.90956 0.90087 0.86873 0.91942 0.87241 0.92691 0.90499 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.22 13.06 21.65 0.28 -58.93 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 48.26 29.55 68.60 2.03 50.29 16 4 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 7 C -0.24 -14.18 9.99 84.04 0.84 -13.34 16 8 H 0.06 3.64 7.83 -2.91 -0.02 3.61 16 9 N -0.73 -37.75 5.21 -343.45 -1.79 -39.54 16 10 C 0.14 6.25 4.79 86.38 0.41 6.66 16 11 C 0.18 5.83 0.32 3.72 0.00 5.83 16 12 N -0.71 -21.39 3.75 -422.40 -1.59 -22.98 16 13 C 0.52 17.37 7.24 87.65 0.63 18.00 16 14 O -0.57 -22.30 12.29 -3.04 -0.04 -22.34 16 15 C -0.12 -3.51 5.68 29.85 0.17 -3.34 16 16 C -0.02 -0.50 5.10 29.85 0.15 -0.35 16 17 C 0.00 -0.01 6.59 43.58 0.29 0.28 16 18 C -0.24 -3.88 11.12 22.40 0.25 -3.64 16 19 C -0.05 -0.62 12.30 67.18 0.83 0.21 16 20 O 0.09 2.05 11.20 71.70 0.80 2.86 16 21 N -0.40 -12.12 12.06 -49.58 -0.60 -12.72 16 22 C -0.15 -4.29 4.84 30.75 0.15 -4.14 16 23 C 0.07 1.47 6.67 72.07 0.48 1.95 16 24 O -0.39 -9.51 10.77 -148.98 -1.60 -11.12 16 25 C 0.07 1.62 6.68 72.01 0.48 2.10 16 26 C -0.16 -4.37 4.82 30.68 0.15 -4.23 16 27 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.38 19.99 6.51 -92.71 -0.60 19.39 16 29 H 0.03 1.23 6.25 -2.39 -0.01 1.21 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.41 10.39 7.41 -92.71 -0.69 9.70 16 32 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 35 H 0.11 2.55 8.09 -2.39 -0.02 2.53 16 36 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.27 0.42 8.06 -2.91 -0.02 0.40 16 38 H 0.07 2.36 7.22 -2.39 -0.02 2.34 16 39 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 1.20 7.02 -2.38 -0.02 1.19 16 42 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.05 1.17 7.75 -2.38 -0.02 1.15 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.08 2.53 6.26 -2.39 -0.01 2.51 16 Total: -1.00 -77.93 364.69 2.53 -75.40 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.27 Total: 36.58 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.30 Total: 2.51 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -3.69 Total: -134.18 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.84 Total: -30.60 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -77.93 2.53 -75.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755096570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.279 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds