Wall clock time and date at job start Tue Mar 31 2020 16:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47032 * 2 1 4 4 C 1.53000 * 109.47032 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46962 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00252 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99637 * 180.02562 * 5 4 3 8 8 C 1.38492 * 119.99431 * 184.53242 * 7 5 4 9 9 C 1.39237 * 126.42733 * 258.23512 * 8 7 5 10 10 C 1.46745 * 126.51606 * 359.97438 * 9 8 7 11 11 O 1.21595 * 120.00047 * 0.29495 * 10 9 8 12 12 O 1.34831 * 119.99771 * 180.29523 * 10 9 8 13 13 C 1.45198 * 116.99897 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47298 * 180.02562 * 13 12 10 15 15 C 1.41472 * 106.96722 * 180.25961 * 9 8 7 16 16 N 1.30303 * 108.17468 * 359.75632 * 15 9 8 17 17 N 1.34762 * 126.43251 * 78.06441 * 8 7 5 18 18 C 1.46496 * 125.74854 * 359.97438 * 17 8 7 19 19 C 1.50701 * 109.46866 * 274.24654 * 18 17 8 20 20 H 1.08003 * 119.99953 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00018 * 179.72205 * 19 18 17 22 22 N 1.31516 * 119.99923 * 0.27384 * 21 19 18 23 23 Si 1.86794 * 120.00293 * 180.27581 * 21 19 18 24 24 H 1.48500 * 109.47036 * 89.99762 * 23 21 19 25 25 H 1.48498 * 109.47260 * 209.99796 * 23 21 19 26 26 H 1.48507 * 109.46852 * 330.00074 * 23 21 19 27 27 H 1.08999 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47016 * 299.99927 * 1 2 3 29 29 H 1.09001 * 109.46877 * 60.00017 * 1 2 3 30 30 H 1.09006 * 109.46970 * 240.00487 * 2 1 3 31 31 H 1.08993 * 109.47116 * 120.00092 * 2 1 3 32 32 H 1.08993 * 109.46769 * 60.00155 * 3 2 1 33 33 H 1.08998 * 109.47067 * 300.00464 * 3 2 1 34 34 H 1.09000 * 109.47016 * 60.00072 * 4 3 2 35 35 H 1.08993 * 109.47116 * 300.00092 * 4 3 2 36 36 H 0.96998 * 120.00589 * 4.53150 * 7 5 4 37 37 H 1.09000 * 109.47862 * 300.00518 * 13 12 10 38 38 H 1.08999 * 109.46883 * 60.00307 * 13 12 10 39 39 H 1.08999 * 109.47056 * 60.00225 * 14 13 12 40 40 H 1.08999 * 109.46985 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.46954 * 299.99938 * 14 13 12 42 42 H 1.08000 * 125.91187 * 179.78261 * 15 9 8 43 43 H 1.08996 * 109.47629 * 154.24558 * 18 17 8 44 44 H 1.09002 * 109.46774 * 34.24449 * 18 17 8 45 45 H 0.97003 * 120.00141 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2842 3.7851 0.0004 7 7 5.3974 3.1096 -0.0009 8 6 5.8597 4.4116 0.0944 9 6 6.3342 5.1991 -0.9512 10 6 6.4397 4.8071 -2.3614 11 8 6.0878 3.6972 -2.7118 12 8 6.9267 5.6777 -3.2684 13 6 7.0029 5.2219 -4.6449 14 6 7.5765 6.3376 -5.5207 15 6 6.7017 6.4467 -0.3945 16 7 6.4593 6.4080 0.8852 17 7 5.9317 5.1551 1.2160 18 6 5.5306 4.7225 2.5569 19 6 4.0545 4.9636 2.7419 20 1 3.4733 5.3955 1.9405 21 6 3.4448 4.6271 3.9318 22 7 4.1524 4.1007 4.9074 23 14 1.6137 4.9188 4.1584 24 1 0.8628 3.7150 3.7199 25 1 1.3285 5.1855 5.5911 26 1 1.1943 6.0877 3.3441 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8890 36 1 6.0272 2.3750 -0.0684 37 1 7.6496 4.3464 -4.7026 38 1 6.0050 4.9601 -4.9966 39 1 8.5745 6.5990 -5.1688 40 1 7.6333 5.9955 -6.5541 41 1 6.9300 7.2133 -5.4633 42 1 7.1116 7.2861 -0.9365 43 1 6.0875 5.2889 3.3033 44 1 5.7427 3.6598 2.6744 45 1 3.7235 3.8642 5.7448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136858800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:53 Heat of formation + Delta-G solvation = -69.600719 kcal Electronic energy + Delta-G solvation = -28125.996024 eV Core-core repulsion = 24144.750316 eV Total energy + Delta-G solvation = -3981.245707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13434 -39.62582 -38.99523 -36.17819 -35.28998 -34.35557 -33.76715 -31.96682 -31.45833 -30.57772 -28.90181 -27.41831 -24.96731 -24.01106 -23.09854 -22.15230 -21.41877 -20.54459 -20.23325 -19.46857 -17.63210 -17.07447 -16.86209 -16.39089 -16.26469 -15.83115 -15.67912 -14.83281 -14.48671 -14.21862 -13.95955 -13.71978 -13.64574 -13.55266 -13.43134 -13.07094 -12.79591 -12.47604 -12.29918 -12.20439 -11.85822 -11.81940 -11.59393 -11.20544 -11.09186 -11.07323 -10.95987 -10.87698 -10.74040 -10.42714 -10.39517 -10.28334 -9.94132 -9.87455 -9.53119 -9.19666 -8.69888 -8.64031 -8.14451 -6.28177 -4.32953 1.72099 2.55435 2.73850 3.01027 3.19736 3.24506 3.29682 3.38816 3.58274 3.74541 4.33069 4.88160 4.89837 4.93272 4.99307 5.03166 5.07200 5.10978 5.23772 5.29770 5.36130 5.44112 5.55985 5.60902 5.71027 5.71550 5.80275 5.87598 5.91748 5.95937 6.00337 6.10068 6.22014 6.39265 6.41372 6.56994 6.69307 6.76236 6.82216 7.05235 7.52163 7.68253 7.75953 7.80392 8.13941 8.26883 8.62408 8.77864 9.33957 10.80387 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.004744 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.378261 B = 5900.331814 C = 8054.575368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.132 4.132 5 C 0.528 3.472 6 O -0.497 6.497 7 N -0.660 5.660 8 C 0.388 3.612 9 C -0.307 4.307 10 C 0.552 3.448 11 O -0.528 6.528 12 O -0.357 6.357 13 C 0.065 3.935 14 C -0.151 4.151 15 C 0.087 3.913 16 N -0.282 5.282 17 N -0.303 5.303 18 C 0.250 3.750 19 C -0.528 4.528 20 H 0.075 0.925 21 C 0.068 3.932 22 N -0.895 5.895 23 Si 0.907 3.093 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.271 1.271 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.190 0.810 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.853 -5.409 -14.400 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.172 4.172 5 C 0.315 3.685 6 O -0.368 6.368 7 N -0.315 5.315 8 C 0.158 3.842 9 C -0.323 4.323 10 C 0.399 3.601 11 O -0.418 6.418 12 O -0.274 6.274 13 C -0.009 4.009 14 C -0.209 4.209 15 C -0.099 4.099 16 N -0.103 5.103 17 N -0.081 5.081 18 C 0.133 3.867 19 C -0.566 4.566 20 H 0.093 0.907 21 C -0.135 4.135 22 N -0.534 5.534 23 Si 0.734 3.266 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.196 1.196 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.207 0.793 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.119 -4.524 -13.041 14.152 hybrid contribution -0.621 -0.783 -0.556 1.143 sum 2.497 -5.307 -13.597 14.808 Atomic orbital electron populations 1.21760 0.95941 1.01194 1.02085 1.21529 0.95963 0.96769 1.01796 1.21390 0.92675 0.96465 1.03944 1.21611 0.98162 0.93100 1.04315 1.20723 0.80797 0.92150 0.74815 1.90756 1.54357 1.46275 1.45389 1.42443 1.08148 1.04325 1.76555 1.17616 0.94649 0.85247 0.86672 1.18855 1.25471 0.97787 0.90144 1.19803 0.73131 0.82042 0.85153 1.90784 1.47796 1.22102 1.81127 1.86555 1.76947 1.45174 1.18767 1.22900 1.01619 0.97857 0.78554 1.21793 1.02043 0.98649 0.98369 1.23831 0.98032 0.96540 0.91513 1.77232 1.18282 0.99565 1.15223 1.49968 1.40758 1.08200 1.09196 1.19938 0.97577 0.96254 0.72961 1.21330 0.91523 1.42937 1.00800 0.90671 1.24863 0.99088 0.94462 0.95109 1.69925 1.36340 1.42110 1.04997 0.86328 0.84067 0.79174 0.77059 1.20226 1.21073 1.19563 0.93005 0.92569 0.92783 0.92166 0.91918 0.90666 0.91338 0.88930 0.88553 0.74730 0.91571 0.91567 0.91526 0.90582 0.91500 0.79339 0.92063 0.93104 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.42 5.93 -26.73 -0.16 -1.58 16 3 C -0.11 -1.57 4.50 -26.73 -0.12 -1.69 16 4 C -0.13 -1.87 5.70 -27.88 -0.16 -2.03 16 5 C 0.53 10.11 7.78 -10.99 -0.09 10.03 16 6 O -0.50 -11.79 14.74 5.56 0.08 -11.71 16 7 N -0.66 -11.92 4.52 -11.08 -0.05 -11.97 16 8 C 0.39 7.99 6.48 -153.42 -0.99 7.00 16 9 C -0.31 -5.87 6.15 -104.86 -0.64 -6.51 16 10 C 0.55 9.77 7.94 34.17 0.27 10.05 16 11 O -0.53 -9.94 16.09 -19.34 -0.31 -10.25 16 12 O -0.36 -5.33 10.07 -40.85 -0.41 -5.74 16 13 C 0.06 0.74 6.20 37.16 0.23 0.97 16 14 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 15 C 0.09 1.58 11.86 -16.97 -0.20 1.38 16 16 N -0.28 -6.06 12.47 30.88 0.39 -5.67 16 17 N -0.30 -6.88 3.58 -61.13 -0.22 -7.09 16 18 C 0.25 6.24 6.08 -5.20 -0.03 6.21 16 19 C -0.53 -14.56 8.87 -34.44 -0.31 -14.87 16 20 H 0.08 2.25 7.12 -52.48 -0.37 1.88 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.90 -24.93 13.29 55.43 0.74 -24.19 16 23 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 33 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.41 5.93 8.82 -40.82 -0.36 5.57 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 43 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -33.34 391.25 -7.51 -40.85 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.05 Total: 4.43 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.55 Total: 8.55 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.85 Total: -48.93 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.64 Total: -27.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.34 -7.51 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136858800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.756 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds