Wall clock time and date at job start Tue Mar 31 2020 13:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30183 * 126.80378 * 2 1 4 4 O 1.20915 * 111.60497 * 180.24920 * 3 2 1 5 5 C 1.34041 * 111.56862 * 359.74417 * 4 3 2 6 6 C 1.50704 * 126.77557 * 179.97438 * 5 4 3 7 7 C 1.35448 * 106.44592 * 0.02562 * 5 4 3 8 8 C 1.50703 * 128.00623 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.46738 * 346.90193 * 8 7 5 10 10 C 1.53001 * 109.47206 * 106.90259 * 8 7 5 11 11 N 1.46503 * 109.46962 * 226.90005 * 8 7 5 12 12 C 1.34774 * 119.99683 * 159.63519 * 11 8 7 13 13 O 1.21589 * 120.00164 * 359.97438 * 12 11 8 14 14 N 1.34779 * 119.99941 * 180.02562 * 12 11 8 15 15 C 1.47425 * 125.64842 * 0.02562 * 14 12 11 16 16 C 1.54902 * 104.83319 * 204.09503 * 15 14 12 17 17 C 1.55157 * 101.58331 * 322.98951 * 16 15 14 18 18 O 1.42902 * 110.71762 * 277.14052 * 17 16 15 19 19 C 1.50701 * 110.72484 * 154.04354 * 17 16 15 20 20 H 1.08000 * 119.99767 * 267.22162 * 19 17 16 21 21 C 1.37879 * 119.99862 * 87.22002 * 19 17 16 22 22 N 1.31511 * 119.99996 * 177.88483 * 21 19 17 23 23 Si 1.86804 * 120.00129 * 357.88940 * 21 19 17 24 24 H 1.48496 * 109.46921 * 91.12925 * 23 21 19 25 25 H 1.48494 * 109.46928 * 211.13166 * 23 21 19 26 26 H 1.48503 * 109.47064 * 331.13244 * 23 21 19 27 27 C 1.47018 * 125.65050 * 179.71537 * 14 12 11 28 28 H 1.08999 * 109.46719 * 275.79063 * 1 2 3 29 29 H 1.08996 * 109.46759 * 35.79101 * 1 2 3 30 30 H 1.08998 * 109.46577 * 155.79442 * 1 2 3 31 31 H 1.08995 * 109.47035 * 269.99791 * 6 5 4 32 32 H 1.08998 * 109.46693 * 30.00226 * 6 5 4 33 33 H 1.09004 * 109.46661 * 149.99975 * 6 5 4 34 34 H 1.09007 * 109.47387 * 59.99712 * 10 8 7 35 35 H 1.08997 * 109.47061 * 179.97438 * 10 8 7 36 36 H 1.09002 * 109.47321 * 300.00007 * 10 8 7 37 37 H 0.96995 * 120.00050 * 339.64040 * 11 8 7 38 38 H 1.09000 * 110.36377 * 322.93296 * 15 14 12 39 39 H 1.08998 * 110.36858 * 85.24943 * 15 14 12 40 40 H 1.09003 * 111.00911 * 81.06392 * 16 15 14 41 41 H 1.09005 * 111.00350 * 204.87582 * 16 15 14 42 42 H 0.96705 * 113.99750 * 174.73645 * 18 17 16 43 43 H 0.96993 * 119.99976 * 179.97438 * 22 21 19 44 44 H 1.09006 * 109.88293 * 298.39222 * 27 14 12 45 45 H 1.09000 * 109.88263 * 59.55573 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7254 -0.0049 5 6 3.6025 -0.6068 -0.0033 6 6 4.9023 -1.3695 -0.0086 7 6 2.3540 -1.1320 0.0028 8 6 1.9592 -2.5864 0.0063 9 1 2.8289 -3.1995 -0.2296 10 6 1.4268 -2.9670 1.3893 11 7 0.9160 -2.8116 -0.9974 12 6 0.6926 -4.0538 -1.4699 13 8 1.3570 -4.9875 -1.0636 14 7 -0.2667 -4.2610 -2.3937 15 6 -1.1409 -3.2242 -2.9720 16 6 -2.4000 -3.9890 -3.4508 17 6 -1.7809 -5.3128 -3.9720 18 8 -1.2953 -5.1528 -5.3065 19 6 -2.7849 -6.4346 -3.9030 20 1 -2.8251 -7.0704 -3.0310 21 6 -3.6522 -6.6491 -4.9532 22 7 -4.5002 -7.6534 -4.9111 23 14 -3.6227 -5.5132 -6.4359 24 1 -2.6870 -6.0533 -7.4547 25 1 -4.9865 -5.4209 -7.0160 26 1 -3.1709 -4.1624 -6.0157 27 6 -0.6105 -5.5572 -2.9963 28 1 -0.3633 0.1037 1.0224 29 1 -0.3633 0.8336 -0.6010 30 1 -0.3632 -0.9373 -0.4214 31 1 5.2103 -1.5552 -1.0375 32 1 5.6686 -0.7849 0.5003 33 1 4.7677 -2.3201 0.5076 34 1 0.5571 -2.3537 1.6254 35 1 1.1408 -4.0187 1.3917 36 1 2.2029 -2.7994 2.1362 37 1 0.3862 -2.0667 -1.3218 38 1 -1.4094 -2.4884 -2.2139 39 1 -0.6482 -2.7394 -3.8147 40 1 -3.0821 -4.1767 -2.6215 41 1 -2.9031 -3.4496 -4.2534 42 1 -0.8272 -5.9261 -5.6500 43 1 -5.1105 -7.8041 -5.6497 44 1 0.2488 -5.9542 -3.5369 45 1 -0.9179 -6.2573 -2.2194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591959352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:48 Heat of formation + Delta-G solvation = -34.064843 kcal Electronic energy + Delta-G solvation = -28383.919764 eV Core-core repulsion = 24404.215008 eV Total energy + Delta-G solvation = -3979.704756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.01575 -41.46138 -39.61367 -37.67911 -36.34558 -34.97972 -34.44840 -34.34072 -32.21225 -30.94319 -29.89622 -29.70477 -28.54567 -27.10728 -25.31019 -24.05066 -22.37926 -21.52368 -21.43564 -20.81528 -19.68310 -19.10561 -18.74004 -18.05356 -17.23065 -16.98550 -16.79279 -16.60537 -15.96443 -15.36450 -15.24180 -15.07597 -14.98283 -14.56001 -14.37428 -14.12264 -14.08363 -14.01209 -13.97208 -13.73959 -13.52541 -13.34461 -13.22855 -13.15592 -12.95919 -12.74510 -12.46239 -12.33758 -12.24643 -11.86168 -11.83822 -11.32123 -11.13847 -10.93552 -10.66354 -10.41148 -10.33431 -10.14638 -9.50216 -8.32499 -6.48400 0.38792 1.02216 1.52063 1.56263 1.61602 1.78950 2.07380 2.12541 2.46443 2.89358 2.99626 3.14906 3.43945 3.50904 3.69276 3.81328 3.83117 4.05770 4.22042 4.26782 4.30226 4.37214 4.45098 4.53647 4.57469 4.60813 4.66496 4.67399 4.71598 4.83356 4.87325 4.88556 4.98808 5.07857 5.14815 5.15557 5.20530 5.27650 5.42146 5.47471 5.53883 6.02181 6.05950 6.59725 6.92517 6.96036 7.22811 7.30295 7.48960 8.80794 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.003051 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.549657 B = 9174.991760 C = 9544.992224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.028 3.972 3 N -0.391 5.391 4 O 0.088 5.912 5 C 0.000 4.000 6 C -0.081 4.081 7 C -0.228 4.228 8 C 0.248 3.752 9 H 0.092 0.908 10 C -0.155 4.155 11 N -0.729 5.729 12 C 0.720 3.280 13 O -0.629 6.629 14 N -0.631 5.631 15 C 0.106 3.894 16 C -0.118 4.118 17 C 0.219 3.781 18 O -0.560 6.560 19 C -0.549 4.549 20 H 0.038 0.962 21 C 0.024 3.976 22 N -0.940 5.940 23 Si 1.003 2.997 24 H -0.285 1.285 25 H -0.336 1.336 26 H -0.240 1.240 27 C 0.122 3.878 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.403 0.597 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.380 0.620 43 H 0.267 0.733 44 H 0.058 0.942 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.520 17.454 9.624 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 N -0.100 5.100 4 O 0.027 5.973 5 C -0.065 4.065 6 C -0.138 4.138 7 C -0.232 4.232 8 C 0.143 3.857 9 H 0.110 0.890 10 C -0.213 4.213 11 N -0.388 5.388 12 C 0.422 3.578 13 O -0.510 6.510 14 N -0.368 5.368 15 C -0.016 4.016 16 C -0.157 4.157 17 C 0.179 3.821 18 O -0.369 6.369 19 C -0.587 4.587 20 H 0.057 0.943 21 C -0.176 4.176 22 N -0.577 5.577 23 Si 0.835 3.165 24 H -0.212 1.212 25 H -0.269 1.269 26 H -0.165 1.165 27 C -0.002 4.002 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.242 0.758 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.230 0.770 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.490 18.605 9.998 26.193 hybrid contribution -0.613 -1.320 -0.842 1.681 sum 14.877 17.285 9.157 24.575 Atomic orbital electron populations 1.20428 0.84615 1.04152 1.04917 1.23778 0.99899 0.88051 1.01381 1.73840 0.89700 1.24576 1.21865 1.84797 1.21427 1.23098 1.68006 1.24855 0.99090 0.83284 0.99232 1.20651 0.88681 0.98895 1.05536 1.20916 0.92716 0.96326 1.13286 1.18777 0.90458 0.88328 0.88152 0.89039 1.22141 1.02380 1.01506 0.95304 1.45297 1.40560 1.07349 1.45591 1.15513 0.79890 0.83657 0.78776 1.90867 1.52683 1.43105 1.64376 1.47626 1.36450 1.10665 1.42055 1.22437 0.90229 0.90494 0.98448 1.23005 0.96530 0.95075 1.01057 1.19942 0.89133 0.93894 0.79150 1.86190 1.75111 1.44809 1.30802 1.21409 1.17918 1.15117 1.04213 0.94346 1.25922 0.93528 0.96107 1.02007 1.70085 1.22625 1.31187 1.33847 0.84839 0.73021 0.81282 0.77310 1.21200 1.26880 1.16460 1.22368 0.97519 0.84233 0.96122 0.88554 0.89182 0.89921 0.88103 0.87530 0.87798 0.91640 0.93115 0.89815 0.75802 0.88640 0.90475 0.90215 0.89511 0.77025 0.92404 0.92349 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.25 71.24 0.73 -0.47 16 2 C 0.03 0.55 7.14 43.58 0.31 0.86 16 3 N -0.39 -8.75 12.07 -49.55 -0.60 -9.34 16 4 O 0.09 1.76 11.20 71.63 0.80 2.56 16 5 C 0.00 0.00 7.49 25.04 0.19 0.18 16 6 C -0.08 -0.68 10.12 71.24 0.72 0.04 16 7 C -0.23 -4.21 5.18 -19.74 -0.10 -4.31 16 8 C 0.25 5.11 2.85 44.25 0.13 5.23 16 9 H 0.09 2.01 6.99 -2.39 -0.02 2.00 16 10 C -0.15 -2.99 9.38 71.98 0.68 -2.31 16 11 N -0.73 -17.46 4.80 -461.40 -2.22 -19.67 16 12 C 0.72 23.68 8.39 179.05 1.50 25.18 16 13 O -0.63 -25.19 16.10 -4.00 -0.06 -25.25 16 14 N -0.63 -21.18 3.33 -829.75 -2.76 -23.94 16 15 C 0.11 2.95 6.56 86.85 0.57 3.52 16 16 C -0.12 -4.19 5.89 31.98 0.19 -4.00 16 17 C 0.22 9.13 0.68 -10.35 -0.01 9.12 16 18 O -0.56 -21.87 8.46 -148.98 -1.26 -23.13 16 19 C -0.55 -28.94 8.83 25.60 0.23 -28.72 16 20 H 0.04 2.30 7.80 -2.91 -0.02 2.28 16 21 C 0.02 1.31 5.47 84.66 0.46 1.78 16 22 N -0.94 -56.39 13.96 21.45 0.30 -56.09 16 23 Si 1.00 45.45 25.03 68.60 1.72 47.16 16 24 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.34 -15.90 7.11 99.48 0.71 -15.19 16 26 H -0.24 -9.97 4.93 99.48 0.49 -9.48 16 27 C 0.12 4.83 6.22 86.73 0.54 5.37 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.11 5.31 -2.39 -0.01 1.10 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.74 7.65 -2.39 -0.02 0.72 16 34 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.05 1.24 7.84 -2.39 -0.02 1.22 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.40 8.11 4.15 -92.71 -0.38 7.72 16 38 H 0.10 1.96 7.30 -2.39 -0.02 1.94 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 2.90 8.04 -2.39 -0.02 2.88 16 41 H 0.09 3.02 6.39 -2.38 -0.02 3.00 16 42 H 0.38 13.28 8.92 -74.05 -0.66 12.62 16 43 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.06 2.28 8.05 -2.38 -0.02 2.26 16 45 H 0.05 2.07 7.65 -2.39 -0.02 2.06 16 Total: -1.00 -72.55 359.91 1.82 -70.73 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.23 Total: 25.50 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.13 Total: 11.46 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -5.27 Total: -109.05 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.52 Total: -45.81 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.72 Total: 47.16 kcal Total: -72.55 1.82 -70.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.664 kcal (2) G-P(sol) polarization free energy of solvation -72.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds