Wall clock time and date at job start Tue Mar 31 2020 16:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47414 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99812 * 2 1 3 5 5 N 1.46899 * 109.47077 * 65.83803 * 4 2 1 6 6 C 1.46904 * 110.99923 * 211.92821 * 5 4 2 7 7 C 1.50701 * 109.46487 * 71.36563 * 6 5 4 8 8 H 1.07999 * 120.00418 * 5.01076 * 7 6 5 9 9 C 1.37882 * 119.99772 * 185.01329 * 7 6 5 10 10 N 1.31517 * 119.99827 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99936 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47592 * 89.99580 * 11 9 7 13 13 H 1.48505 * 109.46892 * 209.99923 * 11 9 7 14 14 H 1.48503 * 109.46972 * 329.99225 * 11 9 7 15 15 C 1.46909 * 110.99963 * 87.98153 * 5 4 2 16 16 C 1.53003 * 109.46808 * 297.65923 * 15 5 4 17 17 N 1.46499 * 109.47273 * 186.03933 * 16 15 5 18 18 C 1.35762 * 119.62328 * 90.00090 * 17 16 15 19 19 C 1.35346 * 120.70456 * 180.02562 * 18 17 16 20 20 N 1.48004 * 120.02654 * 180.02562 * 19 18 17 21 21 O 1.21802 * 119.99974 * 359.97438 * 20 19 18 22 22 O 1.21803 * 120.00107 * 179.97438 * 20 19 18 23 23 C 1.40198 * 119.94738 * 359.97105 * 19 18 17 24 24 C 1.36405 * 119.26162 * 0.02562 * 23 19 18 25 25 C 1.34651 * 119.62659 * 269.73294 * 17 16 15 26 26 O 1.22064 * 119.98705 * 359.97438 * 25 17 16 27 27 H 1.09002 * 109.46966 * 304.96112 * 1 2 3 28 28 H 1.08997 * 109.47263 * 64.95947 * 1 2 3 29 29 H 1.09001 * 109.47383 * 184.95941 * 1 2 3 30 30 H 1.09001 * 109.47105 * 239.99536 * 2 1 3 31 31 H 1.08995 * 109.47126 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46536 * 300.00014 * 3 2 1 33 33 H 1.08997 * 109.46983 * 59.99962 * 3 2 1 34 34 H 1.08993 * 109.47513 * 305.83556 * 4 2 1 35 35 H 1.09002 * 109.46993 * 185.83857 * 4 2 1 36 36 H 1.08995 * 109.46887 * 191.36294 * 6 5 4 37 37 H 1.08993 * 109.47533 * 311.36551 * 6 5 4 38 38 H 0.97001 * 119.99864 * 180.02562 * 10 9 7 39 39 H 1.09004 * 109.46679 * 177.66520 * 15 5 4 40 40 H 1.08993 * 109.47497 * 57.66001 * 15 5 4 41 41 H 1.09004 * 109.47108 * 306.04383 * 16 15 5 42 42 H 1.09003 * 109.47088 * 66.04172 * 16 15 5 43 43 H 1.08001 * 119.64937 * 359.97438 * 18 17 16 44 44 H 1.07993 * 120.36597 * 180.02562 * 23 19 18 45 45 H 1.07998 * 120.33923 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6686 -2.1409 1.1810 6 6 1.4272 -2.6871 2.5231 7 6 0.1406 -2.1245 3.0702 8 1 -0.4804 -1.4951 2.4502 9 6 -0.2437 -2.4135 4.3625 10 7 0.5123 -3.1805 5.1174 11 14 -1.8388 -1.7169 5.0404 12 1 -2.9497 -2.6625 4.7626 13 1 -1.7099 -1.5216 6.5069 14 1 -2.1249 -0.4125 4.3907 15 6 2.6933 -2.9195 0.4723 16 6 2.8053 -2.4215 -0.9701 17 7 3.7203 -3.2886 -1.7164 18 6 3.2335 -4.3762 -2.3670 19 6 4.0592 -5.1924 -3.0626 20 7 3.5123 -6.3737 -3.7668 21 8 2.3187 -6.6120 -3.7200 22 8 4.2557 -7.1076 -4.3931 23 6 5.4329 -4.9173 -3.1166 24 6 5.9201 -3.8240 -2.4623 25 6 5.0339 -2.9948 -1.7538 26 8 5.4558 -2.0104 -1.1683 27 1 -0.3633 0.5889 0.8422 28 1 -0.3633 0.4350 -0.9310 29 1 -0.3634 -1.0238 0.0888 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5938 -0.2713 2.1362 35 1 3.1249 -0.6316 1.3031 36 1 1.3535 -3.7730 2.4656 37 1 2.2521 -2.4132 3.1807 38 1 0.2417 -3.3841 6.0264 39 1 2.4135 -3.9730 0.4723 40 1 3.6533 -2.7984 0.9741 41 1 1.8215 -2.4422 -1.4390 42 1 3.1880 -1.4009 -0.9734 43 1 2.1761 -4.5930 -2.3283 44 1 6.0978 -5.5637 -3.6700 45 1 6.9752 -3.5955 -2.4926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761663309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:55 Heat of formation + Delta-G solvation = 0.251553 kcal Electronic energy + Delta-G solvation = -27933.841936 eV Core-core repulsion = 23955.625250 eV Total energy + Delta-G solvation = -3978.216685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.60620 -41.72724 -38.12941 -37.59187 -36.73937 -35.36493 -34.13587 -32.58721 -31.33289 -29.90423 -27.01848 -26.75855 -26.58593 -25.59610 -24.40678 -23.41569 -22.19725 -20.72278 -20.02564 -19.48807 -19.08698 -17.78355 -17.75041 -17.36847 -16.59528 -16.48092 -16.01848 -15.43841 -14.92930 -14.69891 -14.33592 -14.04986 -13.84993 -13.70957 -13.34687 -13.07483 -12.97535 -12.55579 -12.27919 -12.16374 -11.87794 -11.77153 -11.51128 -11.46907 -11.33710 -11.31512 -11.18640 -11.03300 -10.80128 -10.68210 -10.59975 -10.46951 -10.21131 -9.94444 -9.90858 -9.37748 -8.88434 -8.53564 -7.53914 -6.12435 -4.14491 -0.27496 0.25912 0.98536 1.36429 2.06623 2.92524 3.25632 3.32498 3.34923 3.75910 3.81696 4.08673 4.26517 4.36984 4.62889 4.72586 4.88896 5.05465 5.14371 5.19421 5.23249 5.28346 5.32098 5.35698 5.54532 5.62272 5.73521 5.84959 5.96136 5.97078 6.03735 6.11860 6.23900 6.28074 6.31694 6.40912 6.48553 6.74102 6.87935 7.05784 7.18634 7.31588 7.44767 7.68490 7.88311 7.99429 8.35434 8.94137 9.50541 10.98175 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.003315 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.223296 B = 8444.700679 C = 9415.298070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 C -0.148 4.148 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.195 3.805 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.042 3.958 16 C 0.076 3.924 17 N -0.476 5.476 18 C 0.248 3.752 19 C -0.161 4.161 20 N 0.053 4.947 21 O -0.171 6.171 22 O -0.163 6.163 23 C 0.004 3.996 24 C -0.220 4.220 25 C 0.514 3.486 26 O -0.507 6.507 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.026 0.974 37 H -0.003 1.003 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.195 0.805 44 H 0.161 0.839 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 0.500 -16.741 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.070 4.070 5 N -0.251 5.251 6 C 0.070 3.930 7 C -0.545 4.545 8 H 0.086 0.914 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.087 4.087 16 C -0.043 4.043 17 N -0.184 5.184 18 C 0.110 3.890 19 C -0.252 4.252 20 N 0.568 4.432 21 O -0.383 6.383 22 O -0.377 6.377 23 C -0.018 4.018 24 C -0.242 4.242 25 C 0.314 3.686 26 O -0.385 6.385 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.015 0.985 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.212 0.788 44 H 0.178 0.822 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.570 1.674 -16.018 17.795 hybrid contribution -0.196 -0.102 0.803 0.833 sum 7.374 1.572 -15.214 16.980 Atomic orbital electron populations 1.21722 0.94528 1.03285 0.99834 1.21419 0.97059 0.94962 0.98352 1.21837 1.00490 0.96729 1.01486 1.22198 0.96998 0.89223 0.98604 1.62107 1.39060 1.01391 1.22588 1.19770 0.96626 0.95228 0.81346 1.21132 1.05480 1.30744 0.97190 0.91379 1.24994 0.97307 0.95348 0.96904 1.69955 1.37821 1.37167 1.08806 0.86510 0.83520 0.79475 0.78004 1.20587 1.21349 1.19777 1.22373 0.95829 0.99003 0.91517 1.23047 0.92779 0.94838 0.93638 1.46090 1.11118 1.21482 1.39729 1.21863 1.01276 0.82683 0.83193 1.20030 0.94993 0.96055 1.14120 1.43003 1.00704 1.00714 0.98744 1.94580 0.98458 1.77888 1.67343 1.94545 1.57352 1.45046 1.40780 1.21057 0.91847 0.95455 0.93413 1.22132 1.01890 0.96813 1.03362 1.17432 0.80915 0.87290 0.82936 1.91050 1.74993 1.27754 1.44705 0.93049 0.94546 0.90721 0.91767 0.93223 0.93160 0.92565 0.89469 0.95516 0.95616 0.98467 0.92843 0.90806 0.94604 0.87028 0.86214 0.78768 0.82167 0.81322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.14 37.16 0.34 -1.65 16 2 C -0.10 -1.39 2.64 -90.62 -0.24 -1.63 16 3 C -0.15 -1.85 9.19 37.16 0.34 -1.51 16 4 C 0.06 1.01 3.91 -3.82 -0.01 0.99 16 5 N -0.53 -9.74 3.83 -236.07 -0.90 -10.64 16 6 C 0.19 4.65 4.67 -4.97 -0.02 4.63 16 7 C -0.51 -13.15 8.29 -34.44 -0.29 -13.44 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 11 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.04 0.65 5.16 -3.82 -0.02 0.63 16 16 C 0.08 0.89 3.84 -4.04 -0.02 0.88 16 17 N -0.48 -5.01 2.58 -119.77 -0.31 -5.32 16 18 C 0.25 2.18 9.81 -16.84 -0.17 2.02 16 19 C -0.16 -1.52 6.82 -80.25 -0.55 -2.07 16 20 N 0.05 0.60 4.45 33.82 0.15 0.75 16 21 O -0.17 -2.11 18.39 -29.46 -0.54 -2.65 16 22 O -0.16 -1.97 18.50 -29.46 -0.54 -2.52 16 23 C 0.00 0.03 9.59 -39.51 -0.38 -0.35 16 24 C -0.22 -1.96 9.99 -39.38 -0.39 -2.35 16 25 C 0.51 6.14 7.41 -15.45 -0.11 6.02 16 26 O -0.51 -7.86 16.64 4.86 0.08 -7.78 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.22 7.65 -51.93 -0.40 0.82 16 30 H 0.06 0.81 4.27 -51.93 -0.22 0.59 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.75 7.02 -51.93 -0.36 1.39 16 35 H 0.03 0.47 7.72 -51.93 -0.40 0.06 16 36 H 0.03 0.66 7.88 -51.93 -0.41 0.25 16 37 H 0.00 -0.07 8.06 -51.93 -0.42 -0.49 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 40 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 41 H 0.11 1.10 7.69 -51.93 -0.40 0.70 16 42 H 0.12 1.53 5.03 -51.93 -0.26 1.27 16 43 H 0.20 1.32 7.51 -52.49 -0.39 0.92 16 44 H 0.16 0.97 7.67 -52.49 -0.40 0.57 16 45 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -30.45 375.78 -8.88 -39.33 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.58 Total: -1.23 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.61 Total: -6.41 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.33 Total: -40.17 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -1.01 Total: -12.95 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.45 -8.88 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761663309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.583 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds