Wall clock time and date at job start Tue Mar 31 2020 15:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46844 * 2 1 4 4 C 1.50706 * 109.46843 * 179.97438 * 3 2 1 5 5 C 1.35321 * 126.66240 * 90.28564 * 4 3 2 6 6 C 1.42274 * 103.91544 * 180.15395 * 5 4 3 7 7 C 1.48335 * 126.93299 * 179.88981 * 6 5 4 8 8 O 1.21493 * 120.00109 * 359.70667 * 7 6 5 9 9 N 1.34777 * 119.99563 * 179.70376 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72347 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 H 1.08998 * 110.63837 * 56.68628 * 11 10 9 13 13 C 1.54319 * 110.71874 * 293.54467 * 11 10 9 14 14 N 1.47013 * 107.27192 * 219.44212 * 13 11 10 15 15 C 1.36944 * 125.64988 * 178.91021 * 14 13 11 16 16 H 1.07995 * 119.99658 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00144 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99832 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99789 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47163 * 59.99887 * 19 17 15 21 21 H 1.48502 * 109.46904 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47032 * 299.99513 * 19 17 15 23 23 C 1.47425 * 108.70574 * 358.94341 * 14 13 11 24 24 C 1.54907 * 104.83095 * 24.12747 * 23 14 13 25 25 H 1.08997 * 111.00498 * 81.06068 * 24 23 14 26 26 O 1.42901 * 111.00522 * 204.91998 * 24 23 14 27 27 N 1.30978 * 106.12461 * 359.62154 * 6 5 4 28 28 O 1.20907 * 111.44450 * 0.24408 * 27 6 5 29 29 H 1.08997 * 109.47281 * 60.00163 * 1 2 3 30 30 H 1.08997 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46986 * 300.00014 * 1 2 3 32 32 H 1.08996 * 109.47134 * 239.99710 * 2 1 3 33 33 H 1.08997 * 109.47281 * 119.99837 * 2 1 3 34 34 H 1.08991 * 109.47054 * 60.00093 * 3 2 1 35 35 H 1.08993 * 109.47299 * 299.99527 * 3 2 1 36 36 H 1.07993 * 128.04141 * 0.02562 * 5 4 3 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 38 38 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 39 39 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 40 40 H 1.09002 * 109.88492 * 338.86040 * 13 11 10 41 41 H 1.09006 * 109.88094 * 100.02375 * 13 11 10 42 42 H 0.97007 * 119.99668 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.37003 * 142.96747 * 23 14 13 44 44 H 1.09005 * 110.36704 * 265.18125 * 23 14 13 45 45 H 0.96698 * 113.99920 * 292.19712 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3554 1.4478 -1.0845 6 6 5.6673 1.4414 -0.5339 7 6 6.9480 1.4412 -1.2822 8 8 6.9418 1.4415 -2.4971 9 7 8.1187 1.4408 -0.6143 10 6 9.3836 1.4344 -1.3533 11 6 10.5516 1.4282 -0.3650 12 1 10.4787 0.5760 0.3106 13 6 10.6028 2.7510 0.4281 14 7 12.0185 3.1226 0.5662 15 6 12.4915 4.2466 1.1894 16 1 11.8013 4.9496 1.6318 17 6 13.8579 4.4829 1.2514 18 7 14.6990 3.6263 0.7117 19 14 14.5030 6.0164 2.1009 20 1 14.0748 6.0119 3.5227 21 1 15.9863 6.0340 2.0312 22 1 13.9609 7.2220 1.4244 23 6 12.8446 2.0854 -0.0779 24 6 11.9081 1.4220 -1.1184 25 1 11.8517 2.0179 -2.0293 26 8 12.3274 0.0868 -1.4072 27 7 5.5157 1.4417 0.7671 28 8 4.3467 1.4423 1.0759 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 4.0710 1.4532 -2.1263 37 1 8.1237 1.4402 0.3557 38 1 9.4336 0.5442 -1.9804 39 1 9.4427 2.3242 -1.9800 40 1 10.0664 3.5295 -0.1144 41 1 10.1587 2.6098 1.4135 42 1 15.6539 3.7912 0.7554 43 1 13.7029 2.5380 -0.5744 44 1 13.1759 1.3529 0.6582 45 1 13.1706 0.0324 -1.8775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958550558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:00 Heat of formation + Delta-G solvation = -8.656678 kcal Electronic energy + Delta-G solvation = -26731.277537 eV Core-core repulsion = 22752.674562 eV Total energy + Delta-G solvation = -3978.602975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 4.84 seconds Orbital eigenvalues (eV) -45.32243 -39.72823 -38.20842 -36.16556 -35.23058 -34.72419 -34.14820 -32.35125 -31.90807 -29.78881 -27.64545 -27.46012 -26.00317 -24.69980 -23.26556 -22.89507 -22.06741 -20.69273 -20.05739 -19.60606 -18.04077 -17.86898 -17.12707 -17.00403 -16.60821 -15.82224 -15.61397 -15.36956 -15.02051 -14.74959 -14.22099 -14.00882 -13.91627 -13.74296 -13.64263 -13.04236 -12.91662 -12.88746 -12.43333 -12.11365 -11.99194 -11.85541 -11.76682 -11.59417 -11.26795 -11.20226 -11.00414 -10.81571 -10.70496 -10.64472 -10.42083 -10.10026 -9.90183 -9.73158 -9.69863 -9.20077 -9.08333 -8.71949 -6.92841 -5.72721 -3.15319 0.91043 1.41777 2.62689 2.90255 3.07036 3.37347 3.41412 3.42733 3.77544 4.14115 4.40247 4.45358 4.45836 4.66665 4.70878 4.74294 4.91295 5.00073 5.11345 5.17700 5.20672 5.23258 5.25783 5.42207 5.45734 5.52993 5.63223 5.64050 5.65324 5.76675 5.89074 5.97519 6.01644 6.16537 6.29227 6.40223 6.56363 6.78410 7.33153 7.33869 7.52660 7.72500 7.78470 8.02039 8.13991 8.27218 9.13402 9.74057 10.37172 11.31277 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.002289 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.336457 B =12231.557547 C =13251.667831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.039 4.039 4 C -0.034 4.034 5 C -0.180 4.180 6 C -0.022 4.022 7 C 0.596 3.404 8 O -0.526 6.526 9 N -0.706 5.706 10 C 0.132 3.868 11 C -0.106 4.106 12 H 0.087 0.913 13 C 0.140 3.860 14 N -0.600 5.600 15 C -0.225 4.225 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.918 3.082 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.128 3.872 24 C 0.082 3.918 25 H 0.062 0.938 26 O -0.569 6.569 27 N -0.329 5.329 28 O 0.124 5.876 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.180 0.820 37 H 0.408 0.592 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.026 0.974 42 H 0.254 0.746 43 H 0.110 0.890 44 H 0.023 0.977 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.485 -7.279 -3.349 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.097 4.097 5 C -0.203 4.203 6 C -0.182 4.182 7 C 0.379 3.621 8 O -0.401 6.401 9 N -0.357 5.357 10 C 0.010 3.990 11 C -0.125 4.125 12 H 0.105 0.895 13 C 0.014 3.986 14 N -0.328 5.328 15 C -0.353 4.353 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.572 5.572 19 Si 0.748 3.252 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.003 3.997 24 C 0.022 3.978 25 H 0.080 0.920 26 O -0.374 6.374 27 N -0.030 5.030 28 O 0.048 5.952 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.198 0.802 37 H 0.244 0.756 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.127 0.873 44 H 0.041 0.959 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -23.879 -7.311 -2.888 25.140 hybrid contribution 0.601 0.920 -0.007 1.099 sum -23.278 -6.391 -2.895 24.312 Atomic orbital electron populations 1.21766 0.94775 1.02271 1.02188 1.21575 0.96430 0.94939 1.03260 1.20270 0.83174 0.99114 1.05128 1.24504 0.96229 1.03433 0.85491 1.22426 0.89652 1.06692 1.01506 1.23552 0.96875 1.07607 0.90139 1.16862 0.81606 0.77255 0.86360 1.90796 1.86780 1.50084 1.12448 1.45932 1.05449 1.73179 1.11173 1.21548 0.80483 1.02708 0.94303 1.22416 0.92972 0.99905 0.97200 0.89451 1.21374 0.88654 0.92192 0.96374 1.44304 0.99213 1.23301 1.65946 1.19049 0.90899 0.97010 1.28330 0.90329 1.24808 0.95742 0.98928 1.01140 1.69751 1.01835 1.36056 1.49532 0.86104 0.77740 0.82168 0.79201 1.21134 1.21499 1.21078 1.22549 0.94348 0.90094 0.92717 1.23308 0.94164 0.82608 0.97755 0.92033 1.86369 1.42987 1.27499 1.80532 1.74209 0.97193 1.15930 1.15626 1.84788 1.11086 1.65918 1.33446 0.92376 0.92230 0.92333 0.91220 0.91201 0.89000 0.88201 0.80246 0.75641 0.90700 0.90790 0.95314 0.95655 0.93561 0.87257 0.95943 0.77575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.91 37.16 0.37 -0.14 16 2 C -0.12 -0.55 5.92 -26.73 -0.16 -0.71 16 3 C -0.04 -0.18 5.78 -27.88 -0.16 -0.34 16 4 C -0.03 -0.28 6.73 -35.34 -0.24 -0.52 16 5 C -0.18 -1.86 10.92 -39.07 -0.43 -2.28 16 6 C -0.02 -0.30 7.19 -82.53 -0.59 -0.89 16 7 C 0.60 9.19 7.85 -12.10 -0.09 9.10 16 8 O -0.53 -9.36 16.95 5.37 0.09 -9.27 16 9 N -0.71 -10.52 5.40 -61.09 -0.33 -10.85 16 10 C 0.13 2.11 4.99 -4.04 -0.02 2.09 16 11 C -0.11 -1.88 2.75 -88.78 -0.24 -2.13 16 12 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 13 C 0.14 2.90 6.52 -3.07 -0.02 2.88 16 14 N -0.60 -15.28 3.39 -170.08 -0.58 -15.86 16 15 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 19 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.13 3.08 5.62 -2.53 -0.01 3.06 16 24 C 0.08 1.57 3.88 -24.58 -0.10 1.47 16 25 H 0.06 1.14 8.05 -51.93 -0.42 0.73 16 26 O -0.57 -9.86 13.47 -35.23 -0.47 -10.33 16 27 N -0.33 -4.26 11.84 33.29 0.39 -3.87 16 28 O 0.12 1.33 11.18 17.25 0.19 1.52 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.41 5.72 8.09 -40.82 -0.33 5.39 16 38 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 40 H 0.03 0.60 7.77 -51.93 -0.40 0.19 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.38 5.06 9.12 45.56 0.42 5.47 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -33.09 377.73 -7.50 -40.59 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.08 Total: 6.62 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.95 Total: 4.80 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.05 Total: -56.55 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.19 Total: -18.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.09 -7.50 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958550558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.932 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.84 seconds