Wall clock time and date at job start Tue Mar 31 2020 15:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46844 * 2 1 4 4 C 1.50706 * 109.46843 * 179.97438 * 3 2 1 5 5 C 1.35321 * 126.66240 * 90.28564 * 4 3 2 6 6 C 1.42274 * 103.91544 * 180.15395 * 5 4 3 7 7 C 1.48335 * 126.93299 * 179.88981 * 6 5 4 8 8 O 1.21493 * 120.00109 * 359.70667 * 7 6 5 9 9 N 1.34777 * 119.99563 * 179.70376 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72347 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 H 1.08998 * 110.63837 * 56.68628 * 11 10 9 13 13 C 1.54319 * 110.71874 * 293.54467 * 11 10 9 14 14 N 1.47013 * 107.27192 * 219.44212 * 13 11 10 15 15 C 1.36944 * 125.64988 * 178.91021 * 14 13 11 16 16 H 1.07995 * 119.99658 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00144 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99832 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99789 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47163 * 59.99887 * 19 17 15 21 21 H 1.48502 * 109.46904 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47032 * 299.99513 * 19 17 15 23 23 C 1.47425 * 108.70574 * 358.94341 * 14 13 11 24 24 C 1.54907 * 104.83095 * 24.12747 * 23 14 13 25 25 H 1.08997 * 111.00498 * 81.06068 * 24 23 14 26 26 O 1.42901 * 111.00522 * 204.91998 * 24 23 14 27 27 N 1.30978 * 106.12461 * 359.62154 * 6 5 4 28 28 O 1.20907 * 111.44450 * 0.24408 * 27 6 5 29 29 H 1.08997 * 109.47281 * 60.00163 * 1 2 3 30 30 H 1.08997 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46986 * 300.00014 * 1 2 3 32 32 H 1.08996 * 109.47134 * 239.99710 * 2 1 3 33 33 H 1.08997 * 109.47281 * 119.99837 * 2 1 3 34 34 H 1.08991 * 109.47054 * 60.00093 * 3 2 1 35 35 H 1.08993 * 109.47299 * 299.99527 * 3 2 1 36 36 H 1.07993 * 128.04141 * 0.02562 * 5 4 3 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 38 38 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 39 39 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 40 40 H 1.09002 * 109.88492 * 338.86040 * 13 11 10 41 41 H 1.09006 * 109.88094 * 100.02375 * 13 11 10 42 42 H 0.97007 * 119.99668 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.37003 * 142.96747 * 23 14 13 44 44 H 1.09005 * 110.36704 * 265.18125 * 23 14 13 45 45 H 0.96698 * 113.99920 * 292.19712 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3554 1.4478 -1.0845 6 6 5.6673 1.4414 -0.5339 7 6 6.9480 1.4412 -1.2822 8 8 6.9418 1.4415 -2.4971 9 7 8.1187 1.4408 -0.6143 10 6 9.3836 1.4344 -1.3533 11 6 10.5516 1.4282 -0.3650 12 1 10.4787 0.5760 0.3106 13 6 10.6028 2.7510 0.4281 14 7 12.0185 3.1226 0.5662 15 6 12.4915 4.2466 1.1894 16 1 11.8013 4.9496 1.6318 17 6 13.8579 4.4829 1.2514 18 7 14.6990 3.6263 0.7117 19 14 14.5030 6.0164 2.1009 20 1 14.0748 6.0119 3.5227 21 1 15.9863 6.0340 2.0312 22 1 13.9609 7.2220 1.4244 23 6 12.8446 2.0854 -0.0779 24 6 11.9081 1.4220 -1.1184 25 1 11.8517 2.0179 -2.0293 26 8 12.3274 0.0868 -1.4072 27 7 5.5157 1.4417 0.7671 28 8 4.3467 1.4423 1.0759 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 4.0710 1.4532 -2.1263 37 1 8.1237 1.4402 0.3557 38 1 9.4336 0.5442 -1.9804 39 1 9.4427 2.3242 -1.9800 40 1 10.0664 3.5295 -0.1144 41 1 10.1587 2.6098 1.4135 42 1 15.6539 3.7912 0.7554 43 1 13.7029 2.5380 -0.5744 44 1 13.1759 1.3529 0.6582 45 1 13.1706 0.0324 -1.8775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958550558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:58 Heat of formation + Delta-G solvation = -32.876996 kcal Electronic energy + Delta-G solvation = -26732.327809 eV Core-core repulsion = 22752.674562 eV Total energy + Delta-G solvation = -3979.653247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.20428 -41.00655 -39.79374 -36.71905 -36.61679 -36.25913 -35.07954 -34.06653 -32.66896 -31.48235 -29.38921 -27.94145 -27.58351 -26.19226 -24.55241 -23.81108 -22.61792 -22.29330 -21.53127 -20.90422 -19.03138 -18.90494 -18.76146 -18.29416 -17.91793 -17.15679 -16.90853 -16.55155 -15.99248 -15.80759 -15.73842 -15.44915 -14.85614 -14.78809 -14.58707 -14.46391 -14.15962 -14.05927 -13.73367 -13.33148 -13.32514 -13.14414 -12.75639 -12.54943 -12.48889 -12.43123 -12.40482 -12.15504 -11.94793 -11.93441 -11.69773 -11.62417 -11.50745 -11.32558 -10.86523 -10.76425 -10.46391 -10.34413 -8.96691 -7.82683 -5.28442 -0.02183 0.61640 1.45433 1.48403 1.54824 1.69620 1.95039 2.00219 2.45146 2.79962 3.15538 3.26966 3.41096 3.53011 3.67498 3.84733 3.87291 4.03522 4.05563 4.10927 4.14619 4.28944 4.36474 4.40225 4.52777 4.61829 4.65827 4.80100 4.81125 4.82821 4.88542 4.93421 4.99901 5.08677 5.21940 5.30528 5.33791 5.39211 5.44334 5.50801 5.70123 6.15309 6.21638 6.78091 6.86656 6.98534 7.04390 7.69878 8.32580 9.18930 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.002289 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.336457 B =12231.557547 C =13251.667831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.037 4.037 4 C -0.012 4.012 5 C -0.190 4.190 6 C -0.047 4.047 7 C 0.597 3.403 8 O -0.554 6.554 9 N -0.704 5.704 10 C 0.145 3.855 11 C -0.090 4.090 12 H 0.090 0.910 13 C 0.139 3.861 14 N -0.622 5.622 15 C -0.243 4.243 16 H 0.082 0.918 17 C -0.065 4.065 18 N -0.948 5.948 19 Si 0.983 3.017 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.276 1.276 23 C 0.133 3.867 24 C 0.099 3.901 25 H 0.072 0.928 26 O -0.568 6.568 27 N -0.348 5.348 28 O 0.128 5.872 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.195 0.805 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.249 0.751 43 H 0.082 0.918 44 H -0.008 1.008 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.874 -7.091 -3.405 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.074 4.074 4 C -0.075 4.075 5 C -0.213 4.213 6 C -0.204 4.204 7 C 0.382 3.618 8 O -0.431 6.431 9 N -0.354 5.354 10 C 0.022 3.978 11 C -0.109 4.109 12 H 0.108 0.892 13 C 0.014 3.986 14 N -0.350 5.350 15 C -0.372 4.372 16 H 0.100 0.900 17 C -0.258 4.258 18 N -0.597 5.597 19 Si 0.811 3.189 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.202 1.202 23 C 0.008 3.992 24 C 0.039 3.961 25 H 0.090 0.910 26 O -0.376 6.376 27 N -0.048 5.048 28 O 0.050 5.950 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.212 0.788 37 H 0.249 0.751 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.100 0.900 44 H 0.010 0.990 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -26.276 -7.138 -2.942 27.386 hybrid contribution 1.264 0.819 0.046 1.507 sum -25.011 -6.319 -2.895 25.959 Atomic orbital electron populations 1.21751 0.93761 1.02439 1.02854 1.21556 0.97226 0.94568 1.02722 1.20531 0.80205 0.99669 1.07034 1.25140 0.97478 1.00827 0.84085 1.22666 0.88600 1.07279 1.02749 1.23442 0.96890 1.09463 0.90624 1.17100 0.82219 0.76362 0.86152 1.90771 1.87292 1.51444 1.13595 1.45868 1.05174 1.73060 1.11346 1.21317 0.80141 1.02784 0.93554 1.22239 0.93214 0.98352 0.97084 0.89176 1.21492 0.86345 0.93663 0.97095 1.44584 1.01319 1.23088 1.65970 1.19419 0.91392 0.97931 1.28456 0.90002 1.25658 0.96043 1.01905 1.02178 1.69992 1.01623 1.37538 1.50528 0.85088 0.76690 0.78878 0.78277 1.20524 1.21768 1.20182 1.22341 0.94765 0.89283 0.92861 1.22967 0.93314 0.83172 0.96682 0.90992 1.86343 1.44358 1.26069 1.80784 1.74207 0.98346 1.16691 1.15549 1.84757 1.10746 1.65278 1.34231 0.91637 0.92375 0.91750 0.91690 0.91935 0.87317 0.86063 0.78825 0.75115 0.90153 0.91178 0.94965 0.95203 0.94118 0.90028 0.98994 0.75489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 71.98 0.71 0.07 16 2 C -0.12 -0.80 5.92 30.59 0.18 -0.62 16 3 C -0.04 -0.23 5.78 29.85 0.17 -0.06 16 4 C -0.01 -0.18 6.73 25.01 0.17 -0.01 16 5 C -0.19 -3.63 10.92 22.60 0.25 -3.38 16 6 C -0.05 -1.20 7.19 42.96 0.31 -0.89 16 7 C 0.60 18.09 7.85 86.93 0.68 18.77 16 8 O -0.55 -19.44 16.95 -3.69 -0.06 -19.50 16 9 N -0.70 -20.43 5.40 -465.49 -2.51 -22.94 16 10 C 0.15 4.46 4.99 86.38 0.43 4.89 16 11 C -0.09 -3.12 2.75 -9.60 -0.03 -3.15 16 12 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 13 C 0.14 5.73 6.52 86.73 0.57 6.30 16 14 N -0.62 -32.09 3.39 -692.01 -2.35 -34.44 16 15 C -0.24 -13.64 10.27 84.03 0.86 -12.78 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 17 C -0.07 -3.68 5.49 84.86 0.47 -3.21 16 18 N -0.95 -55.75 10.09 21.65 0.22 -55.53 16 19 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.13 6.52 5.62 86.85 0.49 7.01 16 24 C 0.10 3.74 3.88 31.99 0.12 3.86 16 25 H 0.07 2.60 8.05 -2.39 -0.02 2.58 16 26 O -0.57 -18.98 13.47 -148.98 -2.01 -20.99 16 27 N -0.35 -8.73 11.84 -49.51 -0.59 -9.31 16 28 O 0.13 2.55 11.18 71.91 0.80 3.35 16 29 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.19 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.41 11.29 8.09 -92.71 -0.75 10.54 16 38 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 40 H 0.03 1.32 7.77 -2.39 -0.02 1.30 16 41 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 43 H 0.08 4.46 5.87 -2.39 -0.01 4.45 16 44 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 45 H 0.40 10.10 9.12 -74.06 -0.68 9.42 16 Total: -1.00 -71.93 377.73 0.51 -71.42 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.41 Total: 23.67 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 5.39 Total: 16.80 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -5.23 Total: -122.22 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -1.27 Total: -37.13 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.93 0.51 -71.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958550558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.541 kcal (2) G-P(sol) polarization free energy of solvation -71.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds