Wall clock time and date at job start Tue Mar 31 2020 15:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 C 1.50701 * 109.46777 * 119.99879 * 2 1 3 5 5 O 1.34254 * 126.52694 * 300.01905 * 4 2 1 6 6 C 1.34051 * 108.22944 * 180.02562 * 5 4 2 7 7 N 1.29935 * 109.24161 * 0.02562 * 6 5 4 8 8 C 1.36066 * 108.47715 * 359.97438 * 7 6 5 9 9 C 1.47417 * 126.44945 * 179.97438 * 8 7 6 10 10 O 1.21611 * 120.00224 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00171 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00284 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46755 * 179.97438 * 12 11 9 14 14 H 1.09005 * 110.64189 * 308.13812 * 13 12 11 15 15 C 1.54317 * 110.72455 * 71.47621 * 13 12 11 16 16 N 1.47028 * 107.27337 * 140.55057 * 15 13 12 17 17 C 1.36932 * 125.64786 * 181.09410 * 16 15 13 18 18 H 1.08005 * 119.99838 * 161.76975 * 17 16 15 19 19 C 1.38811 * 120.00176 * 341.76612 * 17 16 15 20 20 N 1.31617 * 119.99805 * 156.22363 * 19 17 16 21 21 Si 1.86797 * 120.00294 * 336.22717 * 19 17 16 22 22 H 1.48496 * 109.46968 * 84.65078 * 21 19 17 23 23 H 1.48497 * 109.47233 * 204.65635 * 21 19 17 24 24 H 1.48505 * 109.46683 * 324.65144 * 21 19 17 25 25 C 1.47426 * 108.70113 * 1.06518 * 16 15 13 26 26 C 1.54910 * 104.83210 * 335.86624 * 25 16 15 27 27 H 1.08997 * 111.04083 * 278.92718 * 26 25 16 28 28 O 1.42897 * 111.00240 * 155.08534 * 26 25 16 29 29 H 1.08994 * 109.47145 * 300.00180 * 1 2 3 30 30 H 1.09000 * 109.47009 * 60.00300 * 1 2 3 31 31 H 1.08995 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46649 * 239.99844 * 2 1 3 33 33 H 1.08994 * 109.47312 * 59.99922 * 3 2 1 34 34 H 1.09005 * 109.46823 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46988 * 299.99713 * 3 2 1 36 36 H 1.07992 * 125.37704 * 179.97438 * 6 5 4 37 37 H 0.97006 * 119.99541 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.46610 * 299.99488 * 12 11 9 39 39 H 1.09001 * 109.46962 * 59.99707 * 12 11 9 40 40 H 1.08997 * 109.88934 * 259.97143 * 15 13 12 41 41 H 1.09002 * 109.87970 * 21.13961 * 15 13 12 42 42 H 0.97000 * 120.00136 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.36514 * 217.02826 * 25 16 15 44 44 H 1.08993 * 110.46005 * 94.75377 * 25 16 15 45 45 H 0.96695 * 114.00044 * 67.81017 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7898 -0.3680 2.5058 6 6 2.4129 -1.2482 3.3021 7 7 3.0336 -2.1236 2.5695 8 6 2.8189 -1.8206 1.2605 9 6 3.3409 -2.5559 0.0943 10 8 3.0738 -2.1799 -1.0310 11 7 4.1142 -3.6449 0.2751 12 6 4.6334 -4.3753 -0.8839 13 6 5.4751 -5.5597 -0.4049 14 1 6.2262 -5.2317 0.3137 15 6 4.5768 -6.6583 0.2014 16 7 5.1216 -7.9544 -0.2287 17 6 4.5985 -9.1818 0.0795 18 1 4.8749 -10.0482 -0.5031 19 6 3.7133 -9.3124 1.1407 20 7 2.8653 -10.3186 1.1701 21 14 3.7254 -8.0603 2.5268 22 1 2.8880 -6.8941 2.1476 23 1 3.1795 -8.6817 3.7600 24 1 5.1186 -7.6097 2.7745 25 6 6.3238 -7.7136 -1.0474 26 6 6.1425 -6.2802 -1.6062 27 1 5.4857 -6.2795 -2.4761 28 8 7.4051 -5.6896 -1.9206 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.4016 -1.2316 4.3818 37 1 4.3275 -3.9446 1.1727 38 1 3.8012 -4.7402 -1.4858 39 1 5.2524 -3.7096 -1.4853 40 1 4.5930 -6.5920 1.2892 41 1 3.5559 -6.5457 -0.1638 42 1 2.2469 -10.4101 1.9118 43 1 6.3780 -8.4347 -1.8630 44 1 7.2215 -7.7701 -0.4318 45 1 7.8599 -6.1066 -2.6651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958573279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:49 Heat of formation + Delta-G solvation = -37.605934 kcal Electronic energy + Delta-G solvation = -27880.819778 eV Core-core repulsion = 23900.961469 eV Total energy + Delta-G solvation = -3979.858309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -43.67571 -39.68041 -38.52380 -36.06008 -35.48224 -34.97126 -34.67431 -32.24117 -30.59688 -29.76002 -28.02945 -27.51609 -26.10833 -24.32380 -23.62400 -23.03353 -21.03205 -20.70387 -20.46729 -20.08758 -18.22958 -17.37322 -17.03368 -16.98944 -16.44245 -15.93376 -15.53030 -15.32932 -15.00360 -14.92373 -14.43681 -13.95260 -13.78611 -13.67380 -13.55233 -13.48891 -13.13178 -12.82657 -12.55239 -12.14503 -12.03989 -11.90012 -11.66724 -11.60722 -11.50887 -11.44996 -11.33810 -10.97702 -10.92173 -10.52399 -10.44469 -10.07432 -9.95509 -9.69106 -9.37294 -9.23987 -8.93464 -8.64609 -7.13460 -5.99378 -3.29470 0.91200 1.87266 2.32149 3.09757 3.24362 3.33738 3.46067 3.48667 3.83741 4.22800 4.29557 4.51572 4.52495 4.72851 4.73560 4.80641 4.96384 4.97646 5.09902 5.23753 5.24778 5.27787 5.42331 5.43651 5.45847 5.55374 5.61212 5.63699 5.71133 5.76860 5.86973 5.87886 5.96735 6.03319 6.10721 6.31929 6.39727 6.50272 6.58436 6.67024 7.18485 7.55338 7.62127 7.82580 8.13342 8.26160 8.77190 9.63726 10.09956 11.16641 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.003633 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.533465 B = 7704.710777 C = 8923.300585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 C -0.146 4.146 4 C 0.052 3.948 5 O -0.197 6.197 6 C 0.173 3.827 7 N -0.462 5.462 8 C -0.075 4.075 9 C 0.603 3.397 10 O -0.538 6.538 11 N -0.706 5.706 12 C 0.132 3.868 13 C -0.106 4.106 14 H 0.091 0.909 15 C 0.125 3.875 16 N -0.606 5.606 17 C -0.246 4.246 18 H 0.094 0.906 19 C 0.024 3.976 20 N -0.904 5.904 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.303 1.303 24 H -0.279 1.279 25 C 0.106 3.894 26 C 0.097 3.903 27 H 0.073 0.927 28 O -0.564 6.564 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.255 0.745 37 H 0.410 0.590 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.030 0.970 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 22.742 -0.951 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.004 4.004 5 O -0.083 6.083 6 C -0.055 4.055 7 N -0.190 5.190 8 C -0.195 4.195 9 C 0.389 3.611 10 O -0.417 6.417 11 N -0.356 5.356 12 C 0.009 3.991 13 C -0.125 4.125 14 H 0.109 0.891 15 C 0.001 3.999 16 N -0.334 5.334 17 C -0.373 4.373 18 H 0.112 0.888 19 C -0.175 4.175 20 N -0.547 5.547 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.231 1.231 24 H -0.205 1.205 25 C -0.020 4.020 26 C 0.037 3.963 27 H 0.090 0.910 28 O -0.368 6.368 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.271 0.729 37 H 0.246 0.754 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.406 22.682 -0.923 22.704 hybrid contribution -0.141 0.437 1.155 1.243 sum -0.547 23.119 0.233 23.127 Atomic orbital electron populations 1.21859 0.93082 1.02792 1.02672 1.20348 0.96818 0.96371 0.91308 1.21850 1.01629 0.94121 1.02683 1.23794 0.97020 0.95461 0.84159 1.84351 1.59023 1.48806 1.16168 1.28025 0.93185 0.85448 0.98868 1.70772 1.21286 1.25588 1.01378 1.21497 1.06548 0.99371 0.92078 1.16664 0.78207 0.80037 0.86218 1.90718 1.59715 1.67948 1.23281 1.45829 1.50575 1.27943 1.11296 1.21474 0.97604 0.92477 0.87523 1.22424 0.97571 0.94558 0.97974 0.89076 1.21755 0.96099 0.84947 0.97131 1.44610 1.26808 1.01416 1.60527 1.18637 1.22679 0.84610 1.11387 0.88816 1.24950 0.97429 0.96876 0.98241 1.69853 1.20022 1.32758 1.32067 0.86947 0.77682 0.80796 0.83013 1.21090 1.23070 1.20525 1.22235 0.90923 0.93818 0.95026 1.22945 0.84419 0.92886 0.96076 0.90955 1.86455 1.34110 1.60650 1.55607 0.92271 0.91034 0.92021 0.84664 0.92275 0.92162 0.91061 0.72913 0.75404 0.90623 0.90548 0.95288 0.93540 0.92624 0.92927 0.94760 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.18 37.16 0.34 -0.92 16 2 C -0.03 -0.31 3.24 -91.77 -0.30 -0.61 16 3 C -0.15 -1.17 9.18 37.16 0.34 -0.83 16 4 C 0.05 0.64 5.95 -35.08 -0.21 0.43 16 5 O -0.20 -2.08 10.73 6.52 0.07 -2.01 16 6 C 0.17 1.68 13.19 51.96 0.69 2.36 16 7 N -0.46 -6.25 11.06 -11.49 -0.13 -6.38 16 8 C -0.08 -1.08 6.99 -83.02 -0.58 -1.66 16 9 C 0.60 9.66 7.81 -12.52 -0.10 9.56 16 10 O -0.54 -9.18 14.47 5.27 0.08 -9.10 16 11 N -0.71 -11.21 5.47 -61.39 -0.34 -11.54 16 12 C 0.13 2.08 5.02 -4.04 -0.02 2.06 16 13 C -0.11 -1.82 2.70 -88.79 -0.24 -2.06 16 14 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 15 C 0.13 2.73 4.69 -3.06 -0.01 2.72 16 16 N -0.61 -14.60 3.21 -170.07 -0.55 -15.14 16 17 C -0.25 -6.99 10.56 -15.06 -0.16 -7.14 16 18 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 19 C 0.02 0.71 5.43 -17.43 -0.09 0.61 16 20 N -0.90 -27.92 13.97 55.49 0.78 -27.15 16 21 Si 0.88 22.93 24.40 -169.99 -4.15 18.78 16 22 H -0.28 -7.14 6.83 56.52 0.39 -6.75 16 23 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 24 H -0.28 -7.13 6.89 56.52 0.39 -6.74 16 25 C 0.11 2.05 6.97 -2.53 -0.02 2.03 16 26 C 0.10 1.55 3.88 -24.58 -0.10 1.46 16 27 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 28 O -0.56 -7.84 13.47 -35.23 -0.47 -8.31 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.14 1.63 5.52 -51.93 -0.29 1.34 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.41 6.49 8.20 -40.82 -0.33 6.16 16 38 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.69 3.53 -51.93 -0.18 0.51 16 41 H 0.05 1.06 7.68 -51.93 -0.40 0.67 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.38 3.49 9.12 45.56 0.42 3.91 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -35.28 368.25 -5.47 -40.75 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.85 Total: 6.56 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.46 Total: 7.99 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.23 Total: -60.21 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.33 Total: -19.42 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.15 Total: 18.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.28 -5.47 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958573279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.142 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds