Wall clock time and date at job start Tue Mar 31 2020 15:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 C 1.50701 * 109.46777 * 119.99879 * 2 1 3 5 5 O 1.34254 * 126.52694 * 300.01905 * 4 2 1 6 6 C 1.34051 * 108.22944 * 180.02562 * 5 4 2 7 7 N 1.29935 * 109.24161 * 0.02562 * 6 5 4 8 8 C 1.36066 * 108.47715 * 359.97438 * 7 6 5 9 9 C 1.47417 * 126.44945 * 179.97438 * 8 7 6 10 10 O 1.21611 * 120.00224 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00171 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00284 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46755 * 179.97438 * 12 11 9 14 14 H 1.09005 * 110.64189 * 308.13812 * 13 12 11 15 15 C 1.54317 * 110.72455 * 71.47621 * 13 12 11 16 16 N 1.47028 * 107.27337 * 140.55057 * 15 13 12 17 17 C 1.36932 * 125.64786 * 181.09410 * 16 15 13 18 18 H 1.08005 * 119.99838 * 161.76975 * 17 16 15 19 19 C 1.38811 * 120.00176 * 341.76612 * 17 16 15 20 20 N 1.31617 * 119.99805 * 156.22363 * 19 17 16 21 21 Si 1.86797 * 120.00294 * 336.22717 * 19 17 16 22 22 H 1.48496 * 109.46968 * 84.65078 * 21 19 17 23 23 H 1.48497 * 109.47233 * 204.65635 * 21 19 17 24 24 H 1.48505 * 109.46683 * 324.65144 * 21 19 17 25 25 C 1.47426 * 108.70113 * 1.06518 * 16 15 13 26 26 C 1.54910 * 104.83210 * 335.86624 * 25 16 15 27 27 H 1.08997 * 111.04083 * 278.92718 * 26 25 16 28 28 O 1.42897 * 111.00240 * 155.08534 * 26 25 16 29 29 H 1.08994 * 109.47145 * 300.00180 * 1 2 3 30 30 H 1.09000 * 109.47009 * 60.00300 * 1 2 3 31 31 H 1.08995 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46649 * 239.99844 * 2 1 3 33 33 H 1.08994 * 109.47312 * 59.99922 * 3 2 1 34 34 H 1.09005 * 109.46823 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46988 * 299.99713 * 3 2 1 36 36 H 1.07992 * 125.37704 * 179.97438 * 6 5 4 37 37 H 0.97006 * 119.99541 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.46610 * 299.99488 * 12 11 9 39 39 H 1.09001 * 109.46962 * 59.99707 * 12 11 9 40 40 H 1.08997 * 109.88934 * 259.97143 * 15 13 12 41 41 H 1.09002 * 109.87970 * 21.13961 * 15 13 12 42 42 H 0.97000 * 120.00136 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.36514 * 217.02826 * 25 16 15 44 44 H 1.08993 * 110.46005 * 94.75377 * 25 16 15 45 45 H 0.96695 * 114.00044 * 67.81017 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7898 -0.3680 2.5058 6 6 2.4129 -1.2482 3.3021 7 7 3.0336 -2.1236 2.5695 8 6 2.8189 -1.8206 1.2605 9 6 3.3409 -2.5559 0.0943 10 8 3.0738 -2.1799 -1.0310 11 7 4.1142 -3.6449 0.2751 12 6 4.6334 -4.3753 -0.8839 13 6 5.4751 -5.5597 -0.4049 14 1 6.2262 -5.2317 0.3137 15 6 4.5768 -6.6583 0.2014 16 7 5.1216 -7.9544 -0.2287 17 6 4.5985 -9.1818 0.0795 18 1 4.8749 -10.0482 -0.5031 19 6 3.7133 -9.3124 1.1407 20 7 2.8653 -10.3186 1.1701 21 14 3.7254 -8.0603 2.5268 22 1 2.8880 -6.8941 2.1476 23 1 3.1795 -8.6817 3.7600 24 1 5.1186 -7.6097 2.7745 25 6 6.3238 -7.7136 -1.0474 26 6 6.1425 -6.2802 -1.6062 27 1 5.4857 -6.2795 -2.4761 28 8 7.4051 -5.6896 -1.9206 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.4016 -1.2316 4.3818 37 1 4.3275 -3.9446 1.1727 38 1 3.8012 -4.7402 -1.4858 39 1 5.2524 -3.7096 -1.4853 40 1 4.5930 -6.5920 1.2892 41 1 3.5559 -6.5457 -0.1638 42 1 2.2469 -10.4101 1.9118 43 1 6.3780 -8.4347 -1.8630 44 1 7.2215 -7.7701 -0.4318 45 1 7.8599 -6.1066 -2.6651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958573279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:28 Heat of formation + Delta-G solvation = -68.498707 kcal Electronic energy + Delta-G solvation = -27882.159389 eV Core-core repulsion = 23900.961469 eV Total energy + Delta-G solvation = -3981.197920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 26.72 seconds Orbital eigenvalues (eV) -44.53916 -40.94705 -39.94404 -36.91583 -36.79406 -36.03891 -35.87340 -34.20630 -32.15450 -30.75213 -29.62531 -28.15086 -27.65745 -25.81441 -24.46651 -24.30767 -22.48926 -21.93336 -21.70711 -21.21673 -19.33925 -19.00147 -18.65896 -17.87870 -17.42231 -17.26040 -17.01361 -16.43623 -16.16403 -15.90592 -15.78425 -15.49392 -15.34634 -14.90421 -14.69877 -14.60454 -14.33930 -14.14709 -13.75276 -13.65736 -13.44729 -13.13268 -12.92540 -12.82451 -12.76028 -12.50355 -12.32382 -12.27652 -12.22745 -12.03036 -11.85049 -11.80789 -11.38091 -11.10099 -11.00513 -10.75796 -10.35136 -9.97581 -9.16011 -8.24713 -5.50556 -0.02613 0.98105 1.25466 1.32476 1.41777 1.48674 1.98467 2.13526 2.35028 2.83619 3.02869 3.11244 3.33142 3.39809 3.50266 3.62488 3.69801 3.90959 3.93937 4.03844 4.16795 4.23760 4.26157 4.40212 4.48019 4.50394 4.59417 4.69920 4.70084 4.74875 4.83886 4.86081 4.90089 5.01366 5.03346 5.11228 5.13937 5.20605 5.23603 5.34707 5.60078 6.03957 6.16857 6.49180 6.66682 6.90214 6.94037 7.46127 8.00881 8.94953 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.003633 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.533465 B = 7704.710777 C = 8923.300585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.033 4.033 3 C -0.140 4.140 4 C 0.059 3.941 5 O -0.192 6.192 6 C 0.196 3.804 7 N -0.501 5.501 8 C -0.110 4.110 9 C 0.599 3.401 10 O -0.556 6.556 11 N -0.710 5.710 12 C 0.142 3.858 13 C -0.094 4.094 14 H 0.097 0.903 15 C 0.124 3.876 16 N -0.624 5.624 17 C -0.237 4.237 18 H 0.068 0.932 19 C -0.032 4.032 20 N -0.949 5.949 21 Si 0.945 3.055 22 H -0.276 1.276 23 H -0.307 1.307 24 H -0.273 1.273 25 C 0.100 3.900 26 C 0.118 3.882 27 H 0.087 0.913 28 O -0.562 6.562 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.304 0.696 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.017 0.983 41 H 0.031 0.969 42 H 0.263 0.737 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 25.762 -0.575 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 C -0.197 4.197 4 C 0.002 3.998 5 O -0.078 6.078 6 C -0.033 4.033 7 N -0.230 5.230 8 C -0.228 4.228 9 C 0.386 3.614 10 O -0.436 6.436 11 N -0.360 5.360 12 C 0.018 3.982 13 C -0.113 4.113 14 H 0.115 0.885 15 C -0.001 4.001 16 N -0.352 5.352 17 C -0.366 4.366 18 H 0.086 0.914 19 C -0.228 4.228 20 N -0.595 5.595 21 Si 0.776 3.224 22 H -0.203 1.203 23 H -0.235 1.235 24 H -0.199 1.199 25 C -0.025 4.025 26 C 0.057 3.943 27 H 0.105 0.895 28 O -0.370 6.370 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.319 0.681 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.034 0.966 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.145 25.722 -0.583 25.729 hybrid contribution -0.238 -0.512 0.988 1.138 sum -0.094 25.210 0.405 25.213 Atomic orbital electron populations 1.21845 0.91764 1.02215 1.04126 1.20402 0.97846 0.97231 0.89706 1.21826 1.01050 0.92719 1.04076 1.24086 0.95856 0.94664 0.85210 1.84388 1.58997 1.48875 1.15579 1.29152 0.90413 0.83447 1.00252 1.70732 1.23397 1.27535 1.01304 1.21394 1.08545 1.00668 0.92171 1.16948 0.77859 0.79936 0.86699 1.90699 1.60364 1.68457 1.24114 1.45858 1.50807 1.28090 1.11211 1.21357 0.97250 0.92036 0.87516 1.22287 0.97016 0.93479 0.98508 0.88494 1.21758 0.96414 0.85401 0.96493 1.44715 1.28665 1.00886 1.60925 1.18631 1.21725 0.85784 1.10419 0.91410 1.25544 0.97712 0.99046 1.00475 1.69962 1.21457 1.35226 1.32882 0.85955 0.77857 0.78740 0.79875 1.20271 1.23526 1.19941 1.22470 0.88959 0.96475 0.94592 1.22619 0.85645 0.90169 0.95852 0.89479 1.86421 1.33146 1.60427 1.57040 0.91210 0.89197 0.93582 0.86765 0.91255 0.93028 0.89288 0.68102 0.75463 0.91380 0.89226 0.96607 0.95105 0.92766 0.92103 0.94632 0.74847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.18 71.99 0.66 -1.55 16 2 C -0.03 -0.64 3.24 -11.54 -0.04 -0.68 16 3 C -0.14 -1.97 9.18 71.98 0.66 -1.31 16 4 C 0.06 1.38 5.95 25.19 0.15 1.53 16 5 O -0.19 -3.59 10.73 0.40 0.00 -3.58 16 6 C 0.20 3.26 13.19 130.52 1.72 4.98 16 7 N -0.50 -12.91 11.06 -305.16 -3.37 -16.28 16 8 C -0.11 -3.10 6.99 40.41 0.28 -2.82 16 9 C 0.60 19.10 7.81 86.66 0.68 19.78 16 10 O -0.56 -19.03 14.47 -4.07 -0.06 -19.08 16 11 N -0.71 -22.14 5.47 -466.38 -2.55 -24.69 16 12 C 0.14 4.26 5.02 86.38 0.43 4.70 16 13 C -0.09 -3.06 2.70 -9.61 -0.03 -3.09 16 14 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 15 C 0.12 5.32 4.69 86.73 0.41 5.72 16 16 N -0.62 -29.92 3.21 -691.99 -2.22 -32.14 16 17 C -0.24 -13.70 10.56 84.03 0.89 -12.81 16 18 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 19 C -0.03 -1.94 5.43 84.86 0.46 -1.48 16 20 N -0.95 -60.31 13.97 21.65 0.30 -60.01 16 21 Si 0.95 48.32 24.40 68.60 1.67 50.00 16 22 H -0.28 -13.58 6.83 99.48 0.68 -12.90 16 23 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 24 H -0.27 -13.53 6.89 99.48 0.69 -12.85 16 25 C 0.10 3.71 6.97 86.85 0.61 4.31 16 26 C 0.12 3.47 3.88 31.99 0.12 3.60 16 27 H 0.09 2.37 8.05 -2.39 -0.02 2.35 16 28 O -0.56 -13.66 13.47 -148.98 -2.01 -15.66 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 2.74 5.52 -2.39 -0.01 2.72 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.30 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.41 12.77 8.20 -92.70 -0.76 12.01 16 38 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 39 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.02 0.75 3.53 -2.39 -0.01 0.74 16 41 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 42 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.40 5.86 9.12 -74.06 -0.68 5.18 16 Total: -1.00 -78.25 368.25 -1.67 -79.92 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.45 Total: 20.66 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 7.01 Total: 20.87 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -7.84 Total: -133.12 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -2.06 Total: -38.33 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.67 Total: 50.00 kcal Total: -78.25 -1.67 -79.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958573279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.425 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.72 seconds