Wall clock time and date at job start Tue Mar 31 2020 13:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99915 * 2 1 4 4 C 1.50701 * 109.47145 * 179.97438 * 3 2 1 5 5 N 1.29937 * 125.37501 * 90.31067 * 4 3 2 6 6 C 1.36068 * 108.47538 * 180.11845 * 5 4 3 7 7 C 1.47423 * 126.44944 * 179.85688 * 6 5 4 8 8 O 1.21609 * 119.99913 * 179.68825 * 7 6 5 9 9 N 1.34774 * 119.99906 * 359.69424 * 7 6 5 10 10 C 1.47484 * 127.03387 * 0.02562 * 9 7 6 11 11 C 1.54007 * 107.08285 * 154.50986 * 10 9 7 12 12 H 1.08993 * 110.32463 * 242.41201 * 11 10 9 13 13 N 1.46500 * 110.32427 * 120.20117 * 11 10 9 14 14 C 1.36930 * 120.00426 * 86.45147 * 13 11 10 15 15 H 1.08009 * 119.99883 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00425 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00325 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99892 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.46932 * 90.00028 * 18 16 14 20 20 H 1.48496 * 109.47119 * 209.99970 * 18 16 14 21 21 H 1.48497 * 109.46999 * 330.00118 * 18 16 14 22 22 C 1.54611 * 105.04344 * 1.30849 * 11 10 9 23 23 C 1.52998 * 110.74013 * 140.18598 * 22 11 10 24 24 C 1.53002 * 110.73830 * 263.32628 * 22 11 10 25 25 C 1.48118 * 127.03156 * 179.97438 * 9 7 6 26 26 C 1.36095 * 107.10198 * 359.59819 * 6 5 4 27 27 O 1.34052 * 125.38228 * 269.97622 * 4 3 2 28 28 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47483 * 300.00208 * 1 2 3 30 30 H 1.09001 * 109.46532 * 60.00185 * 1 2 3 31 31 H 1.09006 * 109.47111 * 60.00085 * 3 2 1 32 32 H 1.08994 * 109.46979 * 299.99592 * 3 2 1 33 33 H 1.09000 * 109.91322 * 35.14794 * 10 9 7 34 34 H 1.08997 * 109.91328 * 273.87427 * 10 9 7 35 35 H 0.97003 * 119.99805 * 266.45265 * 13 11 10 36 36 H 0.97003 * 120.00227 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47598 * 59.99925 * 23 22 11 38 38 H 1.09000 * 109.47375 * 179.97438 * 23 22 11 39 39 H 1.09004 * 109.47203 * 299.99825 * 23 22 11 40 40 H 1.09005 * 109.46760 * 60.00772 * 24 22 11 41 41 H 1.08998 * 109.47298 * 179.97438 * 24 22 11 42 42 H 1.08990 * 109.47449 * 300.00356 * 24 22 11 43 43 H 1.08996 * 110.66106 * 100.89622 * 25 9 7 44 44 H 1.08999 * 110.66365 * 337.77620 * 25 9 7 45 45 H 1.07998 * 126.52493 * 180.20540 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2633 1.1327 -1.0585 6 6 5.5606 1.0252 -0.6624 7 6 6.7401 0.9325 -1.5420 8 8 7.8530 0.8455 -1.0595 9 7 6.5850 0.9444 -2.8807 10 6 5.3169 1.0442 -3.6271 11 6 5.6482 1.6532 -5.0023 12 1 5.1402 2.6097 -5.1251 13 7 5.2639 0.7305 -6.0734 14 6 3.9856 0.7453 -6.5641 15 1 3.2607 1.4375 -6.1617 16 6 3.6216 -0.1286 -7.5793 17 7 2.3930 -0.1141 -8.0512 18 14 4.8755 -1.3254 -8.2757 19 1 4.8297 -2.5941 -7.5055 20 1 4.5599 -1.5996 -9.7005 21 1 6.2338 -0.7337 -8.1746 22 6 7.1809 1.8564 -4.9926 23 6 7.7836 1.4978 -6.3523 24 6 7.5343 3.2945 -4.6079 25 6 7.6533 0.8610 -3.9033 26 6 5.5649 1.0251 0.6985 27 8 4.2859 1.1259 1.0939 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 4.6213 1.6910 -3.0925 34 1 4.8824 0.0528 -3.7551 35 1 5.9150 0.1091 -6.4350 36 1 2.1388 -0.7245 -8.7609 37 1 7.3491 2.1356 -7.1221 38 1 8.8627 1.6487 -6.3226 39 1 7.5685 0.4540 -6.5813 40 1 7.1444 3.5107 -3.6132 41 1 8.6177 3.4145 -4.6070 42 1 7.0928 3.9824 -5.3287 43 1 7.7201 -0.1488 -4.3081 44 1 8.6105 1.1733 -3.4859 45 1 6.4320 0.9565 1.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996466329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:47 Heat of formation + Delta-G solvation = -19.740263 kcal Electronic energy + Delta-G solvation = -28334.257657 eV Core-core repulsion = 24355.174061 eV Total energy + Delta-G solvation = -3979.083596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.55976 -39.96208 -38.18114 -37.96844 -35.04055 -34.09271 -33.09755 -31.58965 -31.06550 -28.14613 -27.98423 -27.00229 -26.68332 -25.91833 -23.93913 -23.20377 -21.68798 -21.37757 -19.64777 -18.91919 -17.57641 -17.48821 -17.37404 -16.65586 -16.21598 -16.01181 -15.82283 -15.59377 -15.20883 -14.63793 -14.40246 -13.93350 -13.76999 -13.65145 -13.17152 -12.95877 -12.82216 -12.67420 -12.47672 -12.05687 -12.00071 -11.83036 -11.76771 -11.55483 -11.34682 -11.21732 -10.97113 -10.78167 -10.48306 -10.43450 -10.29977 -10.11239 -10.03723 -9.84778 -9.54807 -9.25517 -8.96695 -8.34512 -7.31708 -5.79041 -3.15055 0.96397 1.79996 2.33935 3.03821 3.32345 3.34967 3.38396 3.44421 3.50427 4.00762 4.53136 4.56547 4.57034 4.82191 4.86327 5.00246 5.03486 5.06637 5.12274 5.18136 5.37867 5.38309 5.47774 5.50280 5.53353 5.64269 5.72128 5.73392 5.86954 5.91632 5.97195 6.14355 6.15801 6.25705 6.31617 6.44740 6.50701 6.63801 6.69283 6.75979 6.87193 7.36212 7.75947 7.97346 8.23457 8.39978 9.17670 9.89961 10.08987 11.39074 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.004677 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.056983 B = 5984.999921 C = 8150.660967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.161 3.839 4 C 0.190 3.810 5 N -0.423 5.423 6 C -0.061 4.061 7 C 0.614 3.386 8 O -0.553 6.553 9 N -0.595 5.595 10 C 0.078 3.922 11 C 0.181 3.819 12 H 0.073 0.927 13 N -0.740 5.740 14 C -0.244 4.244 15 H 0.092 0.908 16 C 0.008 3.992 17 N -0.932 5.932 18 Si 0.878 3.122 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.275 1.275 22 C -0.092 4.092 23 C -0.128 4.128 24 C -0.128 4.128 25 C 0.117 3.883 26 C 0.015 3.985 27 O -0.192 6.192 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.364 0.636 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 5.284 17.050 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C 0.084 3.916 4 C -0.019 4.019 5 N -0.155 5.155 6 C -0.182 4.182 7 C 0.402 3.598 8 O -0.433 6.433 9 N -0.325 5.325 10 C -0.047 4.047 11 C 0.069 3.931 12 H 0.091 0.909 13 N -0.383 5.383 14 C -0.374 4.374 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.579 5.579 18 Si 0.708 3.292 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.201 1.201 22 C -0.093 4.093 23 C -0.186 4.186 24 C -0.186 4.186 25 C -0.006 4.006 26 C -0.059 4.059 27 O -0.078 6.078 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.200 0.800 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.185 5.129 16.703 17.760 hybrid contribution 0.762 -0.939 0.110 1.214 sum 3.947 4.190 16.812 17.770 Atomic orbital electron populations 1.22839 0.79236 1.03682 1.00574 1.87967 1.20890 1.25745 1.95594 1.20537 0.80705 0.86690 1.03702 1.25774 0.95474 1.02153 0.78503 1.70992 1.00835 1.14634 1.29019 1.21798 0.92208 1.11377 0.92830 1.16279 0.85895 0.77124 0.80492 1.90788 1.24539 1.53160 1.74797 1.48570 1.10983 1.69218 1.03736 1.23555 0.84579 1.03233 0.93362 1.21112 0.91108 0.93904 0.86952 0.90946 1.42958 1.11299 1.42686 1.41394 1.19070 0.86621 1.17166 1.14519 0.89048 1.24633 0.95985 0.99289 0.98838 1.69692 1.16950 1.40615 1.30656 0.86670 0.81594 0.82150 0.78754 1.21119 1.21707 1.20126 1.21969 0.97202 0.95198 0.94977 1.21657 0.99040 1.02258 0.95661 1.21687 1.00790 0.94813 1.01263 1.22589 0.91128 0.99380 0.87456 1.25279 0.84854 1.00143 0.95657 1.84367 1.16989 1.68556 1.37849 0.88904 0.93668 0.92956 0.90080 0.88109 0.89331 0.90457 0.80026 0.93062 0.91383 0.93246 0.92299 0.92888 0.92847 0.92098 0.90936 0.90132 0.75185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.55 10.69 -35.23 -0.38 -4.93 16 3 C 0.16 1.61 6.56 36.01 0.24 1.84 16 4 C 0.19 2.49 7.93 -13.08 -0.10 2.39 16 5 N -0.42 -6.65 8.55 -7.65 -0.07 -6.72 16 6 C -0.06 -0.95 6.84 -83.02 -0.57 -1.51 16 7 C 0.61 10.55 7.89 -12.52 -0.10 10.45 16 8 O -0.55 -10.21 17.10 5.27 0.09 -10.12 16 9 N -0.59 -10.17 3.20 -171.03 -0.55 -10.72 16 10 C 0.08 1.43 6.06 -2.98 -0.02 1.41 16 11 C 0.18 3.38 3.10 -66.56 -0.21 3.17 16 12 H 0.07 1.39 7.83 -51.93 -0.41 0.99 16 13 N -0.74 -16.64 4.31 -52.10 -0.22 -16.87 16 14 C -0.24 -6.59 10.45 -15.06 -0.16 -6.75 16 15 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 16 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -28.59 13.97 55.49 0.78 -27.82 16 18 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.27 6.49 56.52 0.37 -5.90 16 22 C -0.09 -1.42 0.93 -152.64 -0.14 -1.57 16 23 C -0.13 -1.96 7.82 37.16 0.29 -1.67 16 24 C -0.13 -1.73 8.49 37.16 0.32 -1.41 16 25 C 0.12 1.84 5.99 -2.13 -0.01 1.83 16 26 C 0.01 0.18 11.95 29.96 0.36 0.54 16 27 O -0.19 -2.33 10.73 6.52 0.07 -2.26 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.62 6.14 -51.93 -0.32 1.30 16 34 H 0.08 1.63 7.92 -51.93 -0.41 1.22 16 35 H 0.36 8.10 3.37 -40.82 -0.14 7.96 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.98 6.21 -51.93 -0.32 0.66 16 40 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 44 H 0.08 1.21 7.76 -51.93 -0.40 0.80 16 45 H 0.23 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -33.84 370.53 -5.16 -38.99 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.66 Total: 7.70 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 0.91 Total: 10.24 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.06 Total: -62.12 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.22 Total: -17.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.84 -5.16 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996466329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.252 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds