Wall clock time and date at job start Tue Mar 31 2020 13:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99915 * 2 1 4 4 C 1.50701 * 109.47145 * 179.97438 * 3 2 1 5 5 N 1.29937 * 125.37501 * 90.31067 * 4 3 2 6 6 C 1.36068 * 108.47538 * 180.11845 * 5 4 3 7 7 C 1.47423 * 126.44944 * 179.85688 * 6 5 4 8 8 O 1.21609 * 119.99913 * 179.68825 * 7 6 5 9 9 N 1.34774 * 119.99906 * 359.69424 * 7 6 5 10 10 C 1.47484 * 127.03387 * 0.02562 * 9 7 6 11 11 C 1.54007 * 107.08285 * 154.50986 * 10 9 7 12 12 H 1.08993 * 110.32463 * 242.41201 * 11 10 9 13 13 N 1.46500 * 110.32427 * 120.20117 * 11 10 9 14 14 C 1.36930 * 120.00426 * 86.45147 * 13 11 10 15 15 H 1.08009 * 119.99883 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00425 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00325 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99892 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.46932 * 90.00028 * 18 16 14 20 20 H 1.48496 * 109.47119 * 209.99970 * 18 16 14 21 21 H 1.48497 * 109.46999 * 330.00118 * 18 16 14 22 22 C 1.54611 * 105.04344 * 1.30849 * 11 10 9 23 23 C 1.52998 * 110.74013 * 140.18598 * 22 11 10 24 24 C 1.53002 * 110.73830 * 263.32628 * 22 11 10 25 25 C 1.48118 * 127.03156 * 179.97438 * 9 7 6 26 26 C 1.36095 * 107.10198 * 359.59819 * 6 5 4 27 27 O 1.34052 * 125.38228 * 269.97622 * 4 3 2 28 28 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47483 * 300.00208 * 1 2 3 30 30 H 1.09001 * 109.46532 * 60.00185 * 1 2 3 31 31 H 1.09006 * 109.47111 * 60.00085 * 3 2 1 32 32 H 1.08994 * 109.46979 * 299.99592 * 3 2 1 33 33 H 1.09000 * 109.91322 * 35.14794 * 10 9 7 34 34 H 1.08997 * 109.91328 * 273.87427 * 10 9 7 35 35 H 0.97003 * 119.99805 * 266.45265 * 13 11 10 36 36 H 0.97003 * 120.00227 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47598 * 59.99925 * 23 22 11 38 38 H 1.09000 * 109.47375 * 179.97438 * 23 22 11 39 39 H 1.09004 * 109.47203 * 299.99825 * 23 22 11 40 40 H 1.09005 * 109.46760 * 60.00772 * 24 22 11 41 41 H 1.08998 * 109.47298 * 179.97438 * 24 22 11 42 42 H 1.08990 * 109.47449 * 300.00356 * 24 22 11 43 43 H 1.08996 * 110.66106 * 100.89622 * 25 9 7 44 44 H 1.08999 * 110.66365 * 337.77620 * 25 9 7 45 45 H 1.07998 * 126.52493 * 180.20540 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2633 1.1327 -1.0585 6 6 5.5606 1.0252 -0.6624 7 6 6.7401 0.9325 -1.5420 8 8 7.8530 0.8455 -1.0595 9 7 6.5850 0.9444 -2.8807 10 6 5.3169 1.0442 -3.6271 11 6 5.6482 1.6532 -5.0023 12 1 5.1402 2.6097 -5.1251 13 7 5.2639 0.7305 -6.0734 14 6 3.9856 0.7453 -6.5641 15 1 3.2607 1.4375 -6.1617 16 6 3.6216 -0.1286 -7.5793 17 7 2.3930 -0.1141 -8.0512 18 14 4.8755 -1.3254 -8.2757 19 1 4.8297 -2.5941 -7.5055 20 1 4.5599 -1.5996 -9.7005 21 1 6.2338 -0.7337 -8.1746 22 6 7.1809 1.8564 -4.9926 23 6 7.7836 1.4978 -6.3523 24 6 7.5343 3.2945 -4.6079 25 6 7.6533 0.8610 -3.9033 26 6 5.5649 1.0251 0.6985 27 8 4.2859 1.1259 1.0939 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 4.6213 1.6910 -3.0925 34 1 4.8824 0.0528 -3.7551 35 1 5.9150 0.1091 -6.4350 36 1 2.1388 -0.7245 -8.7609 37 1 7.3491 2.1356 -7.1221 38 1 8.8627 1.6487 -6.3226 39 1 7.5685 0.4540 -6.5813 40 1 7.1444 3.5107 -3.6132 41 1 8.6177 3.4145 -4.6070 42 1 7.0928 3.9824 -5.3287 43 1 7.7201 -0.1488 -4.3081 44 1 8.6105 1.1733 -3.4859 45 1 6.4320 0.9565 1.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996466329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:46 Heat of formation + Delta-G solvation = -45.326993 kcal Electronic energy + Delta-G solvation = -28335.367181 eV Core-core repulsion = 24355.174061 eV Total energy + Delta-G solvation = -3980.193119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.58098 -41.33395 -39.39526 -38.92558 -36.16391 -35.86021 -34.51875 -33.05250 -32.53738 -29.67133 -28.92102 -28.22155 -27.90817 -26.66965 -25.58765 -24.58148 -22.97733 -22.67647 -20.86763 -20.47978 -19.39474 -18.65390 -18.31551 -17.80821 -17.25817 -16.99423 -16.88447 -16.64416 -16.37392 -16.35692 -16.02492 -15.39646 -15.03151 -14.90025 -14.63115 -14.43177 -13.91990 -13.85760 -13.57493 -13.41374 -13.31533 -13.20333 -12.92376 -12.80191 -12.72341 -12.58913 -12.32578 -12.17813 -12.01392 -11.95240 -11.76787 -11.56182 -11.39191 -11.29914 -10.94747 -10.81584 -10.31575 -9.73245 -9.32999 -7.99480 -5.32829 -0.05223 0.70269 1.37255 1.39730 1.40528 1.47135 1.79579 2.09705 2.49544 2.55147 3.12681 3.30623 3.33926 3.54953 3.63895 3.68340 3.81131 3.95348 4.08430 4.21401 4.27883 4.40396 4.42124 4.50364 4.50689 4.55436 4.57888 4.61948 4.71832 4.76545 4.85246 4.89426 4.97006 4.99711 5.03354 5.09244 5.21338 5.30144 5.37180 5.48440 5.81250 5.99795 6.24173 6.29938 6.40895 6.91796 7.09862 7.84155 8.03813 9.21760 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.004677 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.056983 B = 5984.999921 C = 8150.660967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.159 3.841 4 C 0.191 3.809 5 N -0.460 5.460 6 C -0.104 4.104 7 C 0.615 3.385 8 O -0.568 6.568 9 N -0.598 5.598 10 C 0.097 3.903 11 C 0.174 3.826 12 H 0.065 0.935 13 N -0.739 5.739 14 C -0.224 4.224 15 H 0.060 0.940 16 C -0.058 4.058 17 N -0.981 5.981 18 Si 0.940 3.060 19 H -0.287 1.287 20 H -0.296 1.296 21 H -0.244 1.244 22 C -0.081 4.081 23 C -0.127 4.127 24 C -0.122 4.122 25 C 0.115 3.885 26 C 0.047 3.953 27 O -0.185 6.185 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.369 0.631 36 H 0.256 0.744 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 5.766 18.634 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.082 3.918 4 C -0.019 4.019 5 N -0.192 5.192 6 C -0.223 4.223 7 C 0.404 3.596 8 O -0.449 6.449 9 N -0.328 5.328 10 C -0.028 4.028 11 C 0.064 3.936 12 H 0.083 0.917 13 N -0.383 5.383 14 C -0.355 4.355 15 H 0.078 0.922 16 C -0.249 4.249 17 N -0.632 5.632 18 Si 0.768 3.232 19 H -0.214 1.214 20 H -0.223 1.223 21 H -0.168 1.168 22 C -0.082 4.082 23 C -0.184 4.184 24 C -0.179 4.179 25 C -0.006 4.006 26 C -0.028 4.028 27 O -0.070 6.070 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.205 0.795 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 5.228 5.637 18.321 19.868 hybrid contribution 0.074 -1.027 -0.228 1.055 sum 5.302 4.609 18.093 19.409 Atomic orbital electron populations 1.23024 0.77453 1.04379 1.01923 1.87902 1.22920 1.26901 1.95897 1.20822 0.78850 0.86450 1.05706 1.26367 0.96560 1.00852 0.78124 1.70916 1.01481 1.16135 1.30646 1.21756 0.91791 1.14768 0.93990 1.16510 0.86332 0.76346 0.80437 1.90764 1.25214 1.53983 1.74919 1.48563 1.10525 1.69568 1.04147 1.23090 0.85253 1.01138 0.93364 1.21273 0.93919 0.92616 0.85787 0.91669 1.42897 1.09673 1.43558 1.42205 1.19011 0.87797 1.15331 1.13341 0.92157 1.25362 0.97898 1.01714 0.99934 1.69864 1.19309 1.42160 1.31839 0.85648 0.80692 0.79594 0.77274 1.21362 1.22297 1.16815 1.21923 0.94094 0.96688 0.95520 1.21645 1.01091 1.00982 0.94727 1.21647 1.02349 0.93089 1.00853 1.22684 0.91387 0.99372 0.87202 1.25919 0.85538 0.96498 0.94836 1.84412 1.16971 1.68189 1.37413 0.88640 0.90966 0.92923 0.86258 0.87854 0.89545 0.93667 0.79526 0.93492 0.92305 0.89970 0.93748 0.93582 0.90456 0.91751 0.91191 0.88669 0.71672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -9.63 10.69 -148.98 -1.59 -11.22 16 3 C 0.16 2.98 6.56 71.24 0.47 3.45 16 4 C 0.19 4.83 7.93 88.39 0.70 5.53 16 5 N -0.46 -14.50 8.55 -293.02 -2.50 -17.00 16 6 C -0.10 -3.12 6.84 40.41 0.28 -2.84 16 7 C 0.61 20.62 7.89 86.66 0.68 21.30 16 8 O -0.57 -20.11 17.10 -4.06 -0.07 -20.18 16 9 N -0.60 -20.15 3.20 -813.27 -2.60 -22.75 16 10 C 0.10 3.64 6.06 86.53 0.52 4.17 16 11 C 0.17 6.51 3.10 45.88 0.14 6.65 16 12 H 0.07 2.54 7.83 -2.39 -0.02 2.52 16 13 N -0.74 -33.32 4.31 -318.74 -1.38 -34.69 16 14 C -0.22 -12.40 10.45 84.03 0.88 -11.52 16 15 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 16 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 17 N -0.98 -62.18 13.97 21.65 0.30 -61.88 16 18 Si 0.94 44.91 27.74 68.60 1.90 46.82 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 21 H -0.24 -10.27 6.49 99.48 0.65 -9.62 16 22 C -0.08 -2.36 0.93 -50.97 -0.05 -2.41 16 23 C -0.13 -3.53 7.82 71.98 0.56 -2.97 16 24 C -0.12 -3.00 8.49 71.98 0.61 -2.38 16 25 C 0.12 3.44 5.99 86.73 0.52 3.96 16 26 C 0.05 1.03 11.95 67.32 0.80 1.83 16 27 O -0.18 -4.12 10.73 0.43 0.00 -4.11 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 3.28 6.14 -2.39 -0.01 3.26 16 34 H 0.04 1.98 7.92 -2.39 -0.02 1.96 16 35 H 0.37 16.02 3.37 -92.71 -0.31 15.71 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.36 6.21 -2.38 -0.01 1.35 16 40 H 0.05 1.20 8.08 -2.38 -0.02 1.18 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.07 2.12 8.02 -2.39 -0.02 2.11 16 44 H 0.09 2.60 7.76 -2.39 -0.02 2.58 16 45 H 0.27 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -75.27 370.53 2.53 -72.74 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.63 Total: 28.73 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 7.84 Total: 23.56 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -6.18 Total: -136.33 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.66 Total: -35.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.82 kcal Total: -75.27 2.53 -72.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996466329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.411 kcal (2) G-P(sol) polarization free energy of solvation -75.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds