Wall clock time and date at job start Tue Mar 31 2020 15:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47408 * 2 1 4 4 C 1.50705 * 109.46651 * 119.99331 * 2 1 3 5 5 O 1.33492 * 126.83137 * 300.17012 * 4 2 1 6 6 N 1.20659 * 113.15477 * 180.30804 * 5 4 2 7 7 C 1.30015 * 112.30584 * 359.71908 * 6 5 4 8 8 C 1.37362 * 126.82702 * 119.99638 * 4 2 1 9 9 C 1.47397 * 128.56697 * 0.02562 * 8 4 2 10 10 O 1.21612 * 119.99611 * 359.69115 * 9 8 4 11 11 N 1.34771 * 120.00400 * 179.69580 * 9 8 4 12 12 C 1.46503 * 120.00194 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46847 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.50946 * 60.10345 * 13 12 11 15 15 C 1.53717 * 109.48148 * 180.36236 * 13 12 11 16 16 N 1.47154 * 108.16009 * 172.39943 * 15 13 12 17 17 C 1.36931 * 120.97887 * 129.43492 * 16 15 13 18 18 H 1.08005 * 120.00440 * 333.49504 * 17 16 15 19 19 C 1.38821 * 119.99883 * 153.49763 * 17 16 15 20 20 N 1.31619 * 119.99631 * 343.07823 * 19 17 16 21 21 Si 1.86796 * 119.99899 * 162.80446 * 19 17 16 22 22 H 1.48494 * 109.47313 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47337 * 119.99994 * 21 19 17 24 24 H 1.48503 * 109.46949 * 240.00023 * 21 19 17 25 25 C 1.47149 * 118.03579 * 309.15864 * 16 15 13 26 26 C 1.53296 * 108.38694 * 50.78628 * 25 16 15 27 27 O 1.42963 * 109.22250 * 307.69880 * 26 25 16 28 28 H 1.09002 * 109.47404 * 300.00917 * 1 2 3 29 29 H 1.09005 * 109.46241 * 60.00323 * 1 2 3 30 30 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47762 * 239.99325 * 2 1 3 32 32 H 1.09002 * 109.47587 * 59.99195 * 3 2 1 33 33 H 1.09002 * 109.47254 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47076 * 299.99609 * 3 2 1 35 35 H 1.07997 * 127.34070 * 180.02562 * 7 6 5 36 36 H 0.97001 * 119.99690 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.46958 * 60.00489 * 12 11 9 38 38 H 1.08997 * 109.46760 * 300.00352 * 12 11 9 39 39 H 1.08999 * 109.83737 * 52.72102 * 15 13 12 40 40 H 1.09001 * 109.74797 * 292.02541 * 15 13 12 41 41 H 0.97003 * 119.99304 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.68413 * 170.50997 * 25 16 15 43 43 H 1.08997 * 109.68203 * 291.02940 * 25 16 15 44 44 H 1.09004 * 109.50741 * 67.61742 * 26 25 16 45 45 H 1.08993 * 109.51437 * 187.72356 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.7927 -0.3769 2.5008 6 7 2.3234 -1.1157 3.2935 7 6 2.9967 -2.0631 2.7108 8 6 2.8249 -1.8315 1.2683 9 6 3.3738 -2.6071 0.1414 10 8 3.1310 -2.2727 -1.0023 11 7 4.1446 -3.6869 0.3785 12 6 4.6897 -4.4580 -0.7415 13 6 5.5218 -5.6230 -0.2015 14 1 4.8907 -6.2689 0.4089 15 6 6.1013 -6.4270 -1.3765 16 7 7.0392 -7.4221 -0.8330 17 6 6.9508 -8.7416 -1.1880 18 1 6.0026 -9.1550 -1.4987 19 6 8.0800 -9.5482 -1.1486 20 7 9.2769 -9.0027 -1.1003 21 14 7.9005 -11.4075 -1.1565 22 1 6.4602 -11.7655 -1.2073 23 1 8.5922 -11.9666 -2.3457 24 1 8.5063 -11.9685 0.0778 25 6 8.0788 -6.9563 0.0985 26 6 7.4063 -6.1256 1.1974 27 8 6.5956 -5.1146 0.5937 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8935 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 3.5615 -2.8522 3.1848 36 1 4.3379 -3.9538 1.2908 37 1 5.3206 -3.8134 -1.3535 38 1 3.8712 -4.8467 -1.3474 39 1 6.6287 -5.7590 -2.0574 40 1 5.2962 -6.9337 -1.9087 41 1 10.0659 -9.5663 -1.0724 42 1 8.5838 -7.8135 0.5435 43 1 8.8022 -6.3412 -0.4366 44 1 6.7821 -6.7734 1.8129 45 1 8.1698 -5.6579 1.8190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035568361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:34 Heat of formation + Delta-G solvation = -5.300306 kcal Electronic energy + Delta-G solvation = -27422.635594 eV Core-core repulsion = 23444.178162 eV Total energy + Delta-G solvation = -3978.457432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 3.73 seconds Orbital eigenvalues (eV) -45.16522 -39.72106 -38.48114 -36.32818 -34.96174 -34.36028 -33.91250 -31.65388 -31.15635 -30.60125 -27.70417 -27.54659 -26.03448 -24.50277 -23.61868 -23.18666 -21.92671 -21.05978 -20.52745 -19.68672 -18.00452 -17.93041 -17.00163 -16.59897 -16.20102 -15.93338 -15.36965 -15.06436 -14.91693 -14.73134 -14.42508 -14.09400 -13.96360 -13.71461 -13.59459 -13.27628 -13.10658 -12.78926 -12.57722 -12.45555 -12.12110 -11.80241 -11.65140 -11.59830 -11.17978 -11.13764 -10.91795 -10.76164 -10.65432 -10.47467 -10.30301 -10.15267 -10.03496 -9.72883 -9.71954 -9.14452 -9.06853 -8.59907 -6.81556 -5.89798 -3.33693 0.84230 1.55464 2.52365 3.07622 3.12347 3.30074 3.38349 3.40297 3.96802 4.01202 4.17694 4.30582 4.38272 4.53771 4.68697 4.85339 4.99664 5.08206 5.25944 5.26549 5.27862 5.40066 5.43659 5.44178 5.50105 5.53209 5.67413 5.72158 5.77337 5.84493 5.92895 5.97952 6.08626 6.21879 6.30573 6.40182 6.42677 6.68906 7.04065 7.40254 7.46140 7.65875 7.77914 7.91016 8.08004 8.27714 9.05763 9.68390 10.24996 11.18285 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.002356 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.229091 B =11883.735292 C =12206.810816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C -0.148 4.148 4 C 0.057 3.943 5 O 0.093 5.907 6 N -0.356 5.356 7 C 0.024 3.976 8 C -0.261 4.261 9 C 0.596 3.404 10 O -0.538 6.538 11 N -0.708 5.708 12 C 0.131 3.869 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.256 4.256 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.390 6.390 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.202 0.798 36 H 0.404 0.596 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.028 0.972 44 H 0.041 0.959 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.305 16.846 5.639 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.048 4.048 3 C -0.205 4.205 4 C -0.008 4.008 5 O 0.033 5.967 6 N -0.061 5.061 7 C -0.159 4.159 8 C -0.268 4.268 9 C 0.383 3.617 10 O -0.417 6.417 11 N -0.358 5.358 12 C 0.008 3.992 13 C 0.004 3.996 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.318 5.318 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.215 1.215 25 C 0.013 3.987 26 C -0.038 4.038 27 O -0.310 6.310 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.218 0.782 36 H 0.239 0.761 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.509 17.495 6.104 23.534 hybrid contribution 0.619 -1.975 -0.069 2.071 sum -13.890 15.520 6.035 21.685 Atomic orbital electron populations 1.21869 0.92834 1.02801 1.02992 1.20269 0.96907 0.96473 0.91199 1.21870 1.01815 0.93859 1.02986 1.24915 0.94518 0.93895 0.87432 1.84554 1.55365 1.44167 1.12599 1.73670 1.11644 1.04703 1.16083 1.26425 1.00035 0.99225 0.90213 1.22130 1.08997 1.01434 0.94262 1.16757 0.78286 0.79958 0.86739 1.90754 1.60281 1.68997 1.21717 1.45707 1.50545 1.28444 1.11091 1.21499 0.96725 0.92539 0.88443 1.22912 0.88334 0.93566 0.94816 0.92239 1.21524 0.94222 0.92031 0.92758 1.44095 1.34067 1.03882 1.49729 1.19238 0.93623 0.84114 1.41536 0.91255 1.25066 0.95123 0.98622 1.00855 1.70043 0.96850 1.33994 1.53743 0.86179 0.77660 0.85297 0.77373 1.20191 1.21591 1.21469 1.21445 0.90230 0.97504 0.89490 1.23328 0.93667 0.90514 0.96276 1.87776 1.43286 1.33536 1.66368 0.91932 0.90918 0.92052 0.85207 0.91931 0.92009 0.90908 0.78161 0.76133 0.90371 0.89843 0.95133 0.91702 0.93505 0.88750 0.95340 0.94067 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.18 37.16 0.34 -0.67 16 2 C -0.03 -0.25 3.29 -91.77 -0.30 -0.55 16 3 C -0.15 -1.04 9.17 37.15 0.34 -0.70 16 4 C 0.06 0.60 6.06 -34.62 -0.21 0.39 16 5 O 0.09 1.00 11.06 18.65 0.21 1.21 16 6 N -0.36 -4.08 12.01 31.81 0.38 -3.70 16 7 C 0.02 0.24 11.95 -14.72 -0.18 0.07 16 8 C -0.26 -2.99 6.47 -102.89 -0.67 -3.66 16 9 C 0.60 7.89 7.81 -12.53 -0.10 7.79 16 10 O -0.54 -8.37 14.86 5.27 0.08 -8.29 16 11 N -0.71 -8.86 5.45 -61.39 -0.33 -9.19 16 12 C 0.13 1.85 5.37 -4.04 -0.02 1.83 16 13 C 0.06 1.05 2.88 -26.36 -0.08 0.97 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 15 C 0.12 2.44 6.05 -3.31 -0.02 2.42 16 16 N -0.59 -14.44 3.04 -171.57 -0.52 -14.96 16 17 C -0.26 -6.80 9.65 -15.06 -0.15 -6.94 16 18 H 0.07 1.80 7.89 -52.48 -0.41 1.39 16 19 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 20 N -0.90 -25.54 11.14 55.49 0.62 -24.92 16 21 Si 0.91 21.07 29.59 -169.99 -5.03 16.04 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.14 3.21 5.44 -3.53 -0.02 3.19 16 26 C 0.04 0.73 6.99 37.31 0.26 0.99 16 27 O -0.39 -6.91 10.13 -35.23 -0.36 -7.26 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.35 5.89 -51.93 -0.31 1.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.20 1.44 7.88 -52.49 -0.41 1.03 16 36 H 0.40 4.39 7.71 -40.82 -0.31 4.08 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.23 7.96 -51.93 -0.41 0.81 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.09 2.40 6.14 -51.93 -0.32 2.08 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -31.21 371.46 -7.05 -38.25 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.81 Total: 2.12 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.88 Total: 5.10 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.14 Total: -52.77 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.07 Total: -14.34 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.21 -7.05 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035568361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.954 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.73 seconds