Wall clock time and date at job start Tue Mar 31 2020 15:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47408 * 2 1 4 4 C 1.50705 * 109.46651 * 119.99331 * 2 1 3 5 5 O 1.33492 * 126.83137 * 300.17012 * 4 2 1 6 6 N 1.20659 * 113.15477 * 180.30804 * 5 4 2 7 7 C 1.30015 * 112.30584 * 359.71908 * 6 5 4 8 8 C 1.37362 * 126.82702 * 119.99638 * 4 2 1 9 9 C 1.47397 * 128.56697 * 0.02562 * 8 4 2 10 10 O 1.21612 * 119.99611 * 359.69115 * 9 8 4 11 11 N 1.34771 * 120.00400 * 179.69580 * 9 8 4 12 12 C 1.46503 * 120.00194 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46847 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.50946 * 60.10345 * 13 12 11 15 15 C 1.53717 * 109.48148 * 180.36236 * 13 12 11 16 16 N 1.47154 * 108.16009 * 172.39943 * 15 13 12 17 17 C 1.36931 * 120.97887 * 129.43492 * 16 15 13 18 18 H 1.08005 * 120.00440 * 333.49504 * 17 16 15 19 19 C 1.38821 * 119.99883 * 153.49763 * 17 16 15 20 20 N 1.31619 * 119.99631 * 343.07823 * 19 17 16 21 21 Si 1.86796 * 119.99899 * 162.80446 * 19 17 16 22 22 H 1.48494 * 109.47313 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47337 * 119.99994 * 21 19 17 24 24 H 1.48503 * 109.46949 * 240.00023 * 21 19 17 25 25 C 1.47149 * 118.03579 * 309.15864 * 16 15 13 26 26 C 1.53296 * 108.38694 * 50.78628 * 25 16 15 27 27 O 1.42963 * 109.22250 * 307.69880 * 26 25 16 28 28 H 1.09002 * 109.47404 * 300.00917 * 1 2 3 29 29 H 1.09005 * 109.46241 * 60.00323 * 1 2 3 30 30 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47762 * 239.99325 * 2 1 3 32 32 H 1.09002 * 109.47587 * 59.99195 * 3 2 1 33 33 H 1.09002 * 109.47254 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47076 * 299.99609 * 3 2 1 35 35 H 1.07997 * 127.34070 * 180.02562 * 7 6 5 36 36 H 0.97001 * 119.99690 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.46958 * 60.00489 * 12 11 9 38 38 H 1.08997 * 109.46760 * 300.00352 * 12 11 9 39 39 H 1.08999 * 109.83737 * 52.72102 * 15 13 12 40 40 H 1.09001 * 109.74797 * 292.02541 * 15 13 12 41 41 H 0.97003 * 119.99304 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.68413 * 170.50997 * 25 16 15 43 43 H 1.08997 * 109.68203 * 291.02940 * 25 16 15 44 44 H 1.09004 * 109.50741 * 67.61742 * 26 25 16 45 45 H 1.08993 * 109.51437 * 187.72356 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.7927 -0.3769 2.5008 6 7 2.3234 -1.1157 3.2935 7 6 2.9967 -2.0631 2.7108 8 6 2.8249 -1.8315 1.2683 9 6 3.3738 -2.6071 0.1414 10 8 3.1310 -2.2727 -1.0023 11 7 4.1446 -3.6869 0.3785 12 6 4.6897 -4.4580 -0.7415 13 6 5.5218 -5.6230 -0.2015 14 1 4.8907 -6.2689 0.4089 15 6 6.1013 -6.4270 -1.3765 16 7 7.0392 -7.4221 -0.8330 17 6 6.9508 -8.7416 -1.1880 18 1 6.0026 -9.1550 -1.4987 19 6 8.0800 -9.5482 -1.1486 20 7 9.2769 -9.0027 -1.1003 21 14 7.9005 -11.4075 -1.1565 22 1 6.4602 -11.7655 -1.2073 23 1 8.5922 -11.9666 -2.3457 24 1 8.5063 -11.9685 0.0778 25 6 8.0788 -6.9563 0.0985 26 6 7.4063 -6.1256 1.1974 27 8 6.5956 -5.1146 0.5937 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8935 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 3.5615 -2.8522 3.1848 36 1 4.3379 -3.9538 1.2908 37 1 5.3206 -3.8134 -1.3535 38 1 3.8712 -4.8467 -1.3474 39 1 6.6287 -5.7590 -2.0574 40 1 5.2962 -6.9337 -1.9087 41 1 10.0659 -9.5663 -1.0724 42 1 8.5838 -7.8135 0.5435 43 1 8.8022 -6.3412 -0.4366 44 1 6.7821 -6.7734 1.8129 45 1 8.1698 -5.6579 1.8190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035568361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:13 Heat of formation + Delta-G solvation = -25.749611 kcal Electronic energy + Delta-G solvation = -27423.522342 eV Core-core repulsion = 23444.178162 eV Total energy + Delta-G solvation = -3979.344181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 27.15 seconds Orbital eigenvalues (eV) -45.98705 -40.85393 -39.92794 -37.05004 -36.47245 -35.76262 -34.78354 -33.35412 -32.41564 -31.77922 -29.30230 -28.08664 -27.52671 -25.61545 -24.94006 -24.40179 -23.26352 -22.01205 -21.63394 -21.08596 -19.02219 -18.79039 -18.75829 -17.60508 -17.38250 -17.14038 -16.85481 -16.25907 -16.12870 -15.88728 -15.68944 -15.49845 -15.11749 -14.96773 -14.66947 -14.57521 -14.30990 -14.17590 -13.71836 -13.22500 -13.06657 -13.02761 -12.88182 -12.70363 -12.49938 -12.40516 -12.24605 -12.16758 -12.06075 -11.88333 -11.84823 -11.48619 -11.35614 -11.13852 -10.80579 -10.59342 -10.55181 -10.12664 -8.76104 -7.92033 -5.39313 -0.01589 0.74114 1.45610 1.47894 1.58190 1.66965 2.09105 2.13837 2.47775 2.77349 3.21388 3.23486 3.24018 3.47705 3.49596 3.86395 3.96683 4.04509 4.08580 4.10565 4.22689 4.29334 4.48155 4.52317 4.59439 4.63360 4.72875 4.76271 4.77380 4.80054 4.90112 4.90915 4.91219 5.06188 5.11747 5.24316 5.27800 5.30638 5.38043 5.55679 5.61411 6.24869 6.32487 6.41909 7.05679 7.06471 7.10771 7.73923 8.27169 9.14011 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.002356 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.229091 B =11883.735292 C =12206.810816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.031 4.031 3 C -0.145 4.145 4 C 0.065 3.935 5 O 0.089 5.911 6 N -0.375 5.375 7 C 0.036 3.964 8 C -0.282 4.282 9 C 0.599 3.401 10 O -0.566 6.566 11 N -0.701 5.701 12 C 0.142 3.858 13 C 0.078 3.922 14 H 0.071 0.929 15 C 0.116 3.884 16 N -0.613 5.613 17 C -0.264 4.264 18 H 0.074 0.926 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.294 1.294 24 H -0.289 1.289 25 C 0.142 3.858 26 C 0.055 3.945 27 O -0.389 6.389 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.251 0.749 42 H 0.066 0.934 43 H -0.002 1.002 44 H 0.052 0.948 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 17.399 6.684 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 C -0.202 4.202 4 C 0.001 3.999 5 O 0.032 5.968 6 N -0.082 5.082 7 C -0.147 4.147 8 C -0.290 4.290 9 C 0.386 3.614 10 O -0.447 6.447 11 N -0.351 5.351 12 C 0.018 3.982 13 C 0.018 3.982 14 H 0.089 0.911 15 C -0.010 4.010 16 N -0.338 5.338 17 C -0.394 4.394 18 H 0.091 0.909 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.215 1.215 25 C 0.016 3.984 26 C -0.023 4.023 27 O -0.308 6.308 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.246 0.754 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.037 0.963 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.016 0.984 44 H 0.071 0.929 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.291 18.077 7.166 25.368 hybrid contribution 1.145 -2.092 -0.457 2.428 sum -15.146 15.986 6.709 23.020 Atomic orbital electron populations 1.21867 0.91310 1.02664 1.04279 1.20343 0.98125 0.96994 0.89589 1.21870 1.01115 0.92919 1.04302 1.25305 0.93405 0.93413 0.87823 1.84550 1.55469 1.44200 1.12542 1.73663 1.12595 1.05414 1.16538 1.26855 0.99163 0.99161 0.89491 1.22031 1.10330 1.02172 0.94444 1.16906 0.77866 0.79812 0.86782 1.90745 1.61304 1.69714 1.22926 1.45555 1.50247 1.28158 1.11171 1.21277 0.96543 0.91636 0.88710 1.22755 0.88026 0.94159 0.93218 0.91075 1.21693 0.93630 0.91499 0.94181 1.44377 1.34759 1.04148 1.50481 1.19587 0.93725 0.85446 1.40618 0.90863 1.25835 0.94863 1.02704 1.01258 1.70197 0.97419 1.35239 1.55362 0.85164 0.77992 0.80233 0.76784 1.18878 1.22113 1.21511 1.21315 0.90058 0.96616 0.90366 1.23145 0.94211 0.90320 0.94593 1.87793 1.43446 1.33272 1.66300 0.91088 0.89212 0.92894 0.86989 0.91062 0.93092 0.89178 0.75413 0.74947 0.91514 0.88747 0.96336 0.90814 0.93964 0.91524 0.98395 0.92940 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.18 71.98 0.66 -1.08 16 2 C -0.03 -0.50 3.29 -11.54 -0.04 -0.54 16 3 C -0.14 -1.82 9.17 71.98 0.66 -1.15 16 4 C 0.07 1.29 6.06 25.48 0.15 1.45 16 5 O 0.09 1.81 11.06 77.00 0.85 2.66 16 6 N -0.37 -7.97 12.01 -54.18 -0.65 -8.62 16 7 C 0.04 0.66 11.95 87.29 1.04 1.70 16 8 C -0.28 -6.08 6.47 -18.74 -0.12 -6.20 16 9 C 0.60 15.08 7.81 86.66 0.68 15.75 16 10 O -0.57 -17.24 14.86 -4.07 -0.06 -17.30 16 11 N -0.70 -16.15 5.45 -466.40 -2.54 -18.69 16 12 C 0.14 3.77 5.37 86.38 0.46 4.24 16 13 C 0.08 2.42 2.88 30.84 0.09 2.51 16 14 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 15 C 0.12 4.59 6.05 86.50 0.52 5.11 16 16 N -0.61 -29.89 3.04 -696.72 -2.12 -32.02 16 17 C -0.26 -14.03 9.65 84.04 0.81 -13.22 16 18 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 19 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 20 N -0.94 -54.29 11.14 21.65 0.24 -54.05 16 21 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 C 0.14 6.66 5.44 86.35 0.47 7.13 16 26 C 0.05 1.93 6.99 72.08 0.50 2.43 16 27 O -0.39 -12.99 10.13 -148.98 -1.51 -14.50 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 2.28 5.89 -2.39 -0.01 2.27 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.23 2.57 7.88 -2.91 -0.02 2.54 16 36 H 0.41 7.87 7.71 -92.71 -0.71 7.15 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 41 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 42 H 0.07 3.48 6.14 -2.39 -0.01 3.47 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -67.72 371.46 2.85 -64.87 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.29 Total: 16.29 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.32 Total: 15.77 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.07 Total: -113.37 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.72 Total: -29.14 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.72 2.85 -64.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035568361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.125 kcal (2) G-P(sol) polarization free energy of solvation -67.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.15 seconds