Wall clock time and date at job start Tue Mar 31 2020 15:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47281 * 2 1 4 4 C 1.50708 * 109.46826 * 240.00444 * 2 1 3 5 5 N 1.30006 * 127.33696 * 60.02122 * 4 2 1 6 6 O 1.20656 * 112.30198 * 179.97438 * 5 4 2 7 7 C 1.33491 * 113.15674 * 0.02562 * 6 5 4 8 8 C 1.37360 * 106.34083 * 359.74087 * 7 6 5 9 9 C 1.47397 * 128.56569 * 180.25785 * 8 7 6 10 10 O 1.21607 * 120.00106 * 180.13735 * 9 8 7 11 11 N 1.34779 * 120.00122 * 0.13343 * 9 8 7 12 12 C 1.46495 * 120.00159 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47478 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.68024 * 300.47516 * 13 12 11 15 15 C 1.53297 * 109.68373 * 179.97438 * 13 12 11 16 16 O 1.42965 * 109.21978 * 187.97582 * 15 13 12 17 17 C 1.42958 * 114.16717 * 62.58128 * 16 15 13 18 18 C 1.53291 * 109.22773 * 297.41972 * 17 16 15 19 19 N 1.47158 * 109.67931 * 60.98586 * 13 12 11 20 20 C 1.36935 * 120.98465 * 350.23917 * 19 13 12 21 21 H 1.08007 * 119.99823 * 49.94123 * 20 19 13 22 22 C 1.38811 * 120.00273 * 229.95443 * 20 19 13 23 23 N 1.31616 * 120.00202 * 188.84380 * 22 20 19 24 24 Si 1.86799 * 119.99844 * 8.83360 * 22 20 19 25 25 H 1.48496 * 109.47168 * 84.29334 * 24 22 20 26 26 H 1.48498 * 109.47266 * 204.29592 * 24 22 20 27 27 H 1.48509 * 109.47176 * 324.29756 * 24 22 20 28 28 H 1.09000 * 109.47183 * 59.99708 * 1 2 3 29 29 H 1.08994 * 109.47088 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46585 * 299.99813 * 1 2 3 31 31 H 1.08993 * 109.47513 * 120.00219 * 2 1 3 32 32 H 1.09000 * 109.47013 * 60.00003 * 3 2 1 33 33 H 1.09000 * 109.47508 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47250 * 300.00251 * 3 2 1 35 35 H 1.08000 * 126.83302 * 180.02562 * 7 6 5 36 36 H 0.97003 * 120.00115 * 0.02562 * 11 9 8 37 37 H 1.09010 * 109.47275 * 300.00371 * 12 11 9 38 38 H 1.09005 * 109.47397 * 60.00138 * 12 11 9 39 39 H 1.08996 * 109.51401 * 307.90232 * 15 13 12 40 40 H 1.09001 * 109.50870 * 68.00355 * 15 13 12 41 41 H 1.09004 * 109.51298 * 57.34318 * 17 16 15 42 42 H 1.09002 * 109.51061 * 177.49199 * 17 16 15 43 43 H 1.08999 * 109.68385 * 172.02738 * 18 17 16 44 44 H 1.09008 * 109.67972 * 292.58053 * 18 17 16 45 45 H 0.97001 * 119.99892 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 7 1.8081 -0.3926 -2.4711 6 8 2.3444 -1.1503 -3.2420 7 6 3.0297 -2.1207 -2.6331 8 6 2.8853 -1.9077 -1.2838 9 6 3.4450 -2.6876 -0.1653 10 8 3.2134 -2.3576 0.9820 11 7 4.2135 -3.7665 -0.4141 12 6 4.7703 -4.5413 0.6975 13 6 5.5979 -5.7036 0.1452 14 1 4.9661 -6.3441 -0.4703 15 6 6.1835 -6.5174 1.3048 16 8 7.1010 -7.4832 0.7857 17 6 8.2309 -6.9170 0.1175 18 6 7.7502 -6.1235 -1.1028 19 7 6.7098 -5.1796 -0.6639 20 6 6.7751 -3.8531 -0.9974 21 1 6.6599 -3.0980 -0.2337 22 6 6.9892 -3.4788 -2.3168 23 7 7.2254 -2.2184 -2.6133 24 14 6.9422 -4.7640 -3.6716 25 1 5.5363 -4.9849 -4.0958 26 1 7.7405 -4.2908 -4.8308 27 1 7.5123 -6.0383 -3.1650 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.5904 -2.9127 -3.1070 36 1 4.3986 -4.0295 -1.3292 37 1 5.4074 -3.8986 1.3053 38 1 3.9582 -4.9322 1.3107 39 1 6.7060 -5.8504 1.9903 40 1 5.3787 -7.0268 1.8349 41 1 8.7609 -6.2514 0.7988 42 1 8.8993 -7.7145 -0.2070 43 1 8.5859 -5.5737 -1.5357 44 1 7.3357 -6.8063 -1.8446 45 1 7.3753 -1.9570 -3.5353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050957708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:12 Heat of formation + Delta-G solvation = 6.173609 kcal Electronic energy + Delta-G solvation = -28972.371674 eV Core-core repulsion = 24994.411788 eV Total energy + Delta-G solvation = -3977.959886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -44.58284 -39.33885 -38.45833 -36.14660 -35.39959 -33.66010 -32.54186 -31.77330 -31.38234 -30.81851 -27.62659 -27.08915 -26.03600 -23.89650 -23.41153 -23.37163 -22.15305 -20.31661 -19.94103 -19.57260 -17.90780 -17.34734 -16.86463 -16.13550 -16.03626 -15.84216 -15.23653 -15.04774 -14.63931 -14.48229 -14.34146 -14.10118 -13.99076 -13.65378 -13.23630 -13.18205 -12.82606 -12.69745 -12.20725 -12.16424 -11.97430 -11.65018 -11.55362 -11.22522 -11.20369 -11.02788 -10.89238 -10.85755 -10.64900 -10.33425 -9.96251 -9.68263 -9.67040 -9.56327 -9.38545 -9.21111 -8.69456 -8.34284 -6.80645 -6.18192 -3.83731 1.45728 2.09114 3.11086 3.23639 3.28377 3.31017 3.65496 3.83132 4.24323 4.29548 4.29944 4.52357 4.64929 5.05791 5.11695 5.22382 5.28598 5.31849 5.39094 5.42959 5.53868 5.64789 5.67622 5.72737 5.78447 5.86323 5.87399 5.88989 5.92676 5.99036 6.03614 6.09441 6.17247 6.22258 6.30899 6.36846 6.50833 6.56010 6.70065 7.02126 7.56772 7.85864 8.11440 8.23413 8.48026 8.69193 8.74633 9.42009 9.90296 10.93362 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.004512 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.974567 B = 6203.629183 C = 7338.129078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.024 4.024 3 C -0.142 4.142 4 C 0.075 3.925 5 N -0.362 5.362 6 O 0.090 5.910 7 C 0.004 3.996 8 C -0.240 4.240 9 C 0.594 3.406 10 O -0.554 6.554 11 N -0.681 5.681 12 C 0.142 3.858 13 C 0.123 3.877 14 H 0.045 0.955 15 C 0.055 3.945 16 O -0.389 6.389 17 C 0.042 3.958 18 C 0.102 3.898 19 N -0.606 5.606 20 C -0.270 4.270 21 H 0.079 0.921 22 C 0.045 3.955 23 N -0.894 5.894 24 Si 0.843 3.157 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.235 1.235 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.221 0.779 36 H 0.408 0.592 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 -2.939 2.712 8.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.200 4.200 4 C -0.088 4.088 5 N -0.070 5.070 6 O 0.031 5.969 7 C -0.079 4.079 8 C -0.247 4.247 9 C 0.380 3.620 10 O -0.434 6.434 11 N -0.331 5.331 12 C 0.018 3.982 13 C 0.017 3.983 14 H 0.063 0.937 15 C -0.024 4.024 16 O -0.307 6.307 17 C -0.036 4.036 18 C -0.023 4.023 19 N -0.333 5.333 20 C -0.399 4.399 21 H 0.096 0.904 22 C -0.158 4.158 23 N -0.533 5.533 24 Si 0.672 3.328 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.160 1.160 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.245 0.755 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.280 -1.818 2.755 8.914 hybrid contribution 0.906 -0.939 -1.091 1.701 sum -7.374 -2.757 1.664 8.047 Atomic orbital electron populations 1.21798 0.93871 1.02025 1.02077 1.19764 0.95754 0.95676 0.93088 1.21805 1.01725 0.94462 1.01971 1.24717 0.96671 0.93808 0.93636 1.73538 1.17540 1.13996 1.01902 1.84530 1.48771 1.29658 1.33927 1.26389 0.95121 0.93953 0.92400 1.22333 1.07159 1.01058 0.94155 1.16725 0.78451 0.80071 0.86722 1.90689 1.61808 1.69422 1.21504 1.45663 1.48469 1.27796 1.11139 1.21110 0.95839 0.92453 0.88833 1.21576 0.90150 0.93555 0.93065 0.93701 1.22883 0.92658 0.91674 0.95143 1.87827 1.35156 1.32962 1.74784 1.23149 0.87704 0.97478 0.95256 1.22379 0.92878 0.92810 0.94234 1.44369 1.20781 1.05927 1.62265 1.18680 1.48216 0.80738 0.92241 0.90388 1.25786 0.97394 0.95168 0.97422 1.69792 1.48434 1.15800 1.19282 0.87707 0.78583 0.84426 0.82130 1.21100 1.22409 1.15999 0.92439 0.92602 0.91801 0.86899 0.91819 0.92211 0.92451 0.76267 0.75487 0.91035 0.91996 0.93024 0.89456 0.93334 0.89942 0.90806 0.93997 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.18 37.16 0.34 -1.38 16 2 C -0.02 -0.35 3.33 -91.77 -0.31 -0.66 16 3 C -0.14 -1.92 9.18 37.16 0.34 -1.58 16 4 C 0.07 1.28 6.09 -79.77 -0.49 0.80 16 5 N -0.36 -6.21 12.01 34.78 0.42 -5.79 16 6 O 0.09 1.48 11.06 18.66 0.21 1.68 16 7 C 0.00 0.06 11.85 30.41 0.36 0.42 16 8 C -0.24 -4.32 6.47 -102.89 -0.67 -4.99 16 9 C 0.59 11.49 7.81 -12.53 -0.10 11.40 16 10 O -0.55 -11.66 15.25 5.27 0.08 -11.58 16 11 N -0.68 -12.52 4.12 -61.39 -0.25 -12.77 16 12 C 0.14 2.45 4.51 -4.04 -0.02 2.43 16 13 C 0.12 2.11 3.20 -67.42 -0.22 1.89 16 14 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 15 C 0.06 0.85 6.29 37.31 0.23 1.09 16 16 O -0.39 -6.56 10.74 -35.23 -0.38 -6.94 16 17 C 0.04 0.69 6.99 37.31 0.26 0.95 16 18 C 0.10 1.92 4.27 -3.52 -0.02 1.90 16 19 N -0.61 -12.20 2.45 -164.28 -0.40 -12.60 16 20 C -0.27 -6.33 6.65 -15.06 -0.10 -6.44 16 21 H 0.08 2.12 7.11 -52.48 -0.37 1.75 16 22 C 0.05 1.10 5.35 -17.43 -0.09 1.01 16 23 N -0.89 -24.04 13.97 55.49 0.78 -23.27 16 24 Si 0.84 18.14 26.73 -169.99 -4.54 13.60 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.24 -4.72 3.88 56.52 0.22 -4.50 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.11 1.85 6.29 -51.93 -0.33 1.52 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.22 3.13 7.68 -52.49 -0.40 2.73 16 36 H 0.41 7.57 6.51 -40.82 -0.27 7.31 16 37 H 0.07 1.38 7.56 -51.92 -0.39 0.99 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.47 6.86 -51.93 -0.36 1.11 16 44 H 0.04 0.81 6.13 -51.92 -0.32 0.49 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -28.51 359.73 -5.96 -34.48 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.83 Total: 10.93 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.46 Total: 6.84 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.54 Total: -54.43 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.09 Total: -16.84 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -4.54 Total: 13.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.51 -5.96 -34.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050957708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.649 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds