Wall clock time and date at job start Tue Mar 31 2020 15:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47281 * 2 1 4 4 C 1.50708 * 109.46826 * 240.00444 * 2 1 3 5 5 N 1.30006 * 127.33696 * 60.02122 * 4 2 1 6 6 O 1.20656 * 112.30198 * 179.97438 * 5 4 2 7 7 C 1.33491 * 113.15674 * 0.02562 * 6 5 4 8 8 C 1.37360 * 106.34083 * 359.74087 * 7 6 5 9 9 C 1.47397 * 128.56569 * 180.25785 * 8 7 6 10 10 O 1.21607 * 120.00106 * 180.13735 * 9 8 7 11 11 N 1.34779 * 120.00122 * 0.13343 * 9 8 7 12 12 C 1.46495 * 120.00159 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47478 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.68024 * 300.47516 * 13 12 11 15 15 C 1.53297 * 109.68373 * 179.97438 * 13 12 11 16 16 O 1.42965 * 109.21978 * 187.97582 * 15 13 12 17 17 C 1.42958 * 114.16717 * 62.58128 * 16 15 13 18 18 C 1.53291 * 109.22773 * 297.41972 * 17 16 15 19 19 N 1.47158 * 109.67931 * 60.98586 * 13 12 11 20 20 C 1.36935 * 120.98465 * 350.23917 * 19 13 12 21 21 H 1.08007 * 119.99823 * 49.94123 * 20 19 13 22 22 C 1.38811 * 120.00273 * 229.95443 * 20 19 13 23 23 N 1.31616 * 120.00202 * 188.84380 * 22 20 19 24 24 Si 1.86799 * 119.99844 * 8.83360 * 22 20 19 25 25 H 1.48496 * 109.47168 * 84.29334 * 24 22 20 26 26 H 1.48498 * 109.47266 * 204.29592 * 24 22 20 27 27 H 1.48509 * 109.47176 * 324.29756 * 24 22 20 28 28 H 1.09000 * 109.47183 * 59.99708 * 1 2 3 29 29 H 1.08994 * 109.47088 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46585 * 299.99813 * 1 2 3 31 31 H 1.08993 * 109.47513 * 120.00219 * 2 1 3 32 32 H 1.09000 * 109.47013 * 60.00003 * 3 2 1 33 33 H 1.09000 * 109.47508 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47250 * 300.00251 * 3 2 1 35 35 H 1.08000 * 126.83302 * 180.02562 * 7 6 5 36 36 H 0.97003 * 120.00115 * 0.02562 * 11 9 8 37 37 H 1.09010 * 109.47275 * 300.00371 * 12 11 9 38 38 H 1.09005 * 109.47397 * 60.00138 * 12 11 9 39 39 H 1.08996 * 109.51401 * 307.90232 * 15 13 12 40 40 H 1.09001 * 109.50870 * 68.00355 * 15 13 12 41 41 H 1.09004 * 109.51298 * 57.34318 * 17 16 15 42 42 H 1.09002 * 109.51061 * 177.49199 * 17 16 15 43 43 H 1.08999 * 109.68385 * 172.02738 * 18 17 16 44 44 H 1.09008 * 109.67972 * 292.58053 * 18 17 16 45 45 H 0.97001 * 119.99892 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 7 1.8081 -0.3926 -2.4711 6 8 2.3444 -1.1503 -3.2420 7 6 3.0297 -2.1207 -2.6331 8 6 2.8853 -1.9077 -1.2838 9 6 3.4450 -2.6876 -0.1653 10 8 3.2134 -2.3576 0.9820 11 7 4.2135 -3.7665 -0.4141 12 6 4.7703 -4.5413 0.6975 13 6 5.5979 -5.7036 0.1452 14 1 4.9661 -6.3441 -0.4703 15 6 6.1835 -6.5174 1.3048 16 8 7.1010 -7.4832 0.7857 17 6 8.2309 -6.9170 0.1175 18 6 7.7502 -6.1235 -1.1028 19 7 6.7098 -5.1796 -0.6639 20 6 6.7751 -3.8531 -0.9974 21 1 6.6599 -3.0980 -0.2337 22 6 6.9892 -3.4788 -2.3168 23 7 7.2254 -2.2184 -2.6133 24 14 6.9422 -4.7640 -3.6716 25 1 5.5363 -4.9849 -4.0958 26 1 7.7405 -4.2908 -4.8308 27 1 7.5123 -6.0383 -3.1650 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.5904 -2.9127 -3.1070 36 1 4.3986 -4.0295 -1.3292 37 1 5.4074 -3.8986 1.3053 38 1 3.9582 -4.9322 1.3107 39 1 6.7060 -5.8504 1.9903 40 1 5.3787 -7.0268 1.8349 41 1 8.7609 -6.2514 0.7988 42 1 8.8993 -7.7145 -0.2070 43 1 8.5859 -5.5737 -1.5357 44 1 7.3357 -6.8063 -1.8446 45 1 7.3753 -1.9570 -3.5353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050957708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:11 Heat of formation + Delta-G solvation = -12.640738 kcal Electronic energy + Delta-G solvation = -28973.187525 eV Core-core repulsion = 24994.411788 eV Total energy + Delta-G solvation = -3978.775737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.93200 -40.82248 -39.89894 -37.37621 -36.86830 -35.25688 -34.00031 -33.43629 -32.72757 -32.21523 -29.21263 -28.12793 -27.46103 -25.27748 -25.06277 -24.62031 -23.56996 -21.78885 -21.43111 -20.87236 -19.37521 -18.70218 -18.49061 -17.63398 -17.46726 -17.25445 -16.72614 -16.52490 -15.95075 -15.82100 -15.69185 -15.55166 -15.50316 -15.03065 -14.63622 -14.49194 -14.27344 -14.18914 -13.79481 -13.46233 -13.15798 -13.08402 -12.82975 -12.72772 -12.42546 -12.33059 -12.31733 -12.24883 -12.05787 -11.88581 -11.36071 -11.32222 -11.09286 -10.98259 -10.78898 -10.74589 -10.39233 -9.88538 -8.48317 -8.08990 -5.73858 0.07692 0.73761 1.40617 1.53192 1.57788 1.87280 2.20263 2.39275 2.49154 2.93895 3.00066 3.13226 3.22589 3.24149 3.85076 3.95889 3.99633 4.10558 4.12294 4.16947 4.23605 4.28826 4.42212 4.46859 4.50517 4.60574 4.64805 4.70279 4.71189 4.77295 4.84848 4.85155 4.93066 4.99845 5.06846 5.07994 5.24346 5.27218 5.34793 5.54883 5.98764 6.26803 6.33031 6.59788 6.94781 7.13256 7.23127 7.56814 8.09163 9.05379 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.004512 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.974567 B = 6203.629183 C = 7338.129078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 C -0.137 4.137 4 C 0.071 3.929 5 N -0.369 5.369 6 O 0.090 5.910 7 C 0.020 3.980 8 C -0.269 4.269 9 C 0.591 3.409 10 O -0.577 6.577 11 N -0.679 5.679 12 C 0.144 3.856 13 C 0.124 3.876 14 H 0.060 0.940 15 C 0.058 3.942 16 O -0.391 6.391 17 C 0.048 3.952 18 C 0.097 3.903 19 N -0.617 5.617 20 C -0.242 4.242 21 H 0.032 0.968 22 C 0.004 3.996 23 N -0.943 5.943 24 Si 0.893 3.107 25 H -0.270 1.270 26 H -0.319 1.319 27 H -0.209 1.209 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.239 0.761 36 H 0.407 0.593 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.122 0.878 41 H 0.043 0.957 42 H 0.113 0.887 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -5.079 2.822 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 C -0.195 4.195 4 C -0.093 4.093 5 N -0.078 5.078 6 O 0.034 5.966 7 C -0.063 4.063 8 C -0.277 4.277 9 C 0.378 3.622 10 O -0.460 6.460 11 N -0.328 5.328 12 C 0.020 3.980 13 C 0.019 3.981 14 H 0.078 0.922 15 C -0.021 4.021 16 O -0.310 6.310 17 C -0.029 4.029 18 C -0.028 4.028 19 N -0.345 5.345 20 C -0.372 4.372 21 H 0.049 0.951 22 C -0.194 4.194 23 N -0.586 5.586 24 Si 0.720 3.280 25 H -0.196 1.196 26 H -0.248 1.248 27 H -0.132 1.132 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.255 0.745 36 H 0.244 0.756 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.140 0.860 41 H 0.061 0.939 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.211 -4.013 2.884 10.453 hybrid contribution 1.234 -0.260 -1.032 1.629 sum -7.977 -4.273 1.852 9.237 Atomic orbital electron populations 1.21754 0.91616 1.02224 1.03370 1.19877 0.97608 0.95877 0.91353 1.21782 1.00316 0.93927 1.03440 1.25135 0.96186 0.93574 0.94371 1.73521 1.18067 1.14302 1.01864 1.84520 1.48691 1.29602 1.33834 1.26681 0.94004 0.93683 0.91883 1.22392 1.08619 1.02084 0.94570 1.16918 0.78336 0.80128 0.86786 1.90664 1.62832 1.70020 1.22443 1.45665 1.48073 1.27700 1.11341 1.21151 0.96274 0.91992 0.88533 1.21714 0.89347 0.93543 0.93500 0.92239 1.22967 0.93299 0.91604 0.94192 1.87839 1.35270 1.33218 1.74652 1.23115 0.87916 0.98082 0.93823 1.22418 0.92089 0.92566 0.95680 1.44453 1.22424 1.04944 1.62649 1.18230 1.46429 0.81579 0.90949 0.95059 1.26242 0.97509 0.96378 0.99308 1.69947 1.51215 1.18156 1.19254 0.86906 0.79101 0.83286 0.78674 1.19553 1.24757 1.13244 0.92251 0.92957 0.89350 0.88630 0.89117 0.94344 0.92190 0.74470 0.75585 0.93775 0.89459 0.93636 0.86028 0.93884 0.86920 0.92205 0.93293 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.18 71.98 0.66 -2.42 16 2 C -0.03 -0.83 3.33 -11.54 -0.04 -0.86 16 3 C -0.14 -3.65 9.18 71.98 0.66 -2.99 16 4 C 0.07 2.44 6.09 45.16 0.28 2.71 16 5 N -0.37 -12.58 12.01 -44.79 -0.54 -13.12 16 6 O 0.09 2.96 11.06 77.01 0.85 3.81 16 7 C 0.02 0.64 11.85 67.61 0.80 1.44 16 8 C -0.27 -9.83 6.47 -18.75 -0.12 -9.95 16 9 C 0.59 23.28 7.81 86.65 0.68 23.96 16 10 O -0.58 -24.89 15.25 -4.05 -0.06 -24.95 16 11 N -0.68 -24.96 4.12 -466.39 -1.92 -26.88 16 12 C 0.14 4.89 4.51 86.38 0.39 5.28 16 13 C 0.12 4.01 3.20 44.97 0.14 4.16 16 14 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.06 1.61 6.29 72.08 0.45 2.07 16 16 O -0.39 -11.81 10.74 -148.98 -1.60 -13.41 16 17 C 0.05 1.44 6.99 72.08 0.50 1.94 16 18 C 0.10 3.42 4.27 86.35 0.37 3.79 16 19 N -0.62 -24.07 2.45 -673.65 -1.65 -25.72 16 20 C -0.24 -11.50 6.65 84.03 0.56 -10.94 16 21 H 0.03 1.80 7.11 -2.91 -0.02 1.78 16 22 C 0.00 0.20 5.35 84.86 0.45 0.65 16 23 N -0.94 -52.30 13.97 21.65 0.30 -52.00 16 24 Si 0.89 36.75 26.73 68.60 1.83 38.58 16 25 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 26 H -0.32 -14.33 7.11 99.48 0.71 -13.63 16 27 H -0.21 -7.65 3.88 99.48 0.39 -7.26 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 3.19 6.29 -2.39 -0.02 3.18 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.24 6.60 7.68 -2.91 -0.02 6.57 16 36 H 0.41 14.93 6.51 -92.71 -0.60 14.33 16 37 H 0.04 1.74 7.56 -2.38 -0.02 1.72 16 38 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.06 2.28 6.86 -2.39 -0.02 2.26 16 44 H 0.05 1.69 6.13 -2.38 -0.01 1.68 16 45 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -62.84 359.73 3.09 -59.75 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.09 Total: 35.11 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 5.79 Total: 18.82 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -3.80 Total: -117.71 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.81 Total: -34.55 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.83 Total: 38.58 kcal Total: -62.84 3.09 -59.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050957708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.106 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds