Wall clock time and date at job start Tue Mar 31 2020 15:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52988 * 109.47647 * 2 1 4 4 C 1.50701 * 109.47073 * 120.00217 * 2 1 3 5 5 C 1.41265 * 126.70335 * 274.71372 * 4 2 1 6 6 C 1.36831 * 103.84517 * 179.85485 * 5 4 2 7 7 C 1.47510 * 126.93874 * 180.12309 * 6 5 4 8 8 O 1.21583 * 120.00715 * 0.29941 * 7 6 5 9 9 N 1.34783 * 119.99689 * 180.29489 * 7 6 5 10 10 C 1.46494 * 119.99945 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47110 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.67687 * 300.06625 * 11 10 9 13 13 C 1.53289 * 109.68223 * 179.51106 * 11 10 9 14 14 O 1.42964 * 109.22278 * 187.97847 * 13 11 10 15 15 C 1.42963 * 114.16830 * 62.57687 * 14 13 11 16 16 C 1.53296 * 109.22255 * 297.41951 * 15 14 13 17 17 N 1.47151 * 109.67998 * 60.58305 * 11 10 9 18 18 C 1.36935 * 120.98169 * 350.23202 * 17 11 10 19 19 H 1.08003 * 120.00017 * 31.20711 * 18 17 11 20 20 C 1.38814 * 120.00068 * 211.19345 * 18 17 11 21 21 N 1.31611 * 120.00003 * 10.77652 * 20 18 17 22 22 Si 1.86803 * 119.99860 * 190.76858 * 20 18 17 23 23 H 1.48494 * 109.46912 * 60.00586 * 22 20 18 24 24 H 1.48498 * 109.46989 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47166 * 300.00482 * 22 20 18 26 26 O 1.34643 * 106.11317 * 0.39276 * 6 5 4 27 27 N 1.20887 * 111.46531 * 359.72847 * 26 6 5 28 28 H 1.09001 * 109.46914 * 59.99798 * 1 2 3 29 29 H 1.09004 * 109.46809 * 300.00276 * 1 2 3 30 30 H 1.08991 * 109.47676 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46953 * 239.99237 * 2 1 3 32 32 H 1.09001 * 109.47129 * 300.00071 * 3 2 1 33 33 H 1.09000 * 109.47567 * 59.99613 * 3 2 1 34 34 H 1.09000 * 109.47325 * 180.02562 * 3 2 1 35 35 H 1.07996 * 128.07650 * 359.96664 * 5 4 2 36 36 H 0.97004 * 119.99700 * 0.02562 * 9 7 6 37 37 H 1.08991 * 109.47941 * 300.00949 * 10 9 7 38 38 H 1.09001 * 109.46674 * 60.01020 * 10 9 7 39 39 H 1.08998 * 109.51533 * 307.89727 * 13 11 10 40 40 H 1.09000 * 109.51943 * 68.04890 * 13 11 10 41 41 H 1.09001 * 109.51144 * 177.49934 * 15 14 13 42 42 H 1.08999 * 109.55439 * 57.37255 * 15 14 13 43 43 H 1.09005 * 109.68417 * 292.58099 * 16 15 14 44 44 H 1.09000 * 109.70947 * 172.04314 * 16 15 14 45 45 H 0.96996 * 120.00167 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2260 -0.1465 2.5111 6 6 2.6843 -1.1932 3.2639 7 6 3.0480 -1.1648 4.6932 8 8 2.9467 -0.1316 5.3260 9 7 3.4925 -2.2844 5.2977 10 6 3.8543 -2.2562 6.7170 11 6 4.3245 -3.6459 7.1512 12 1 3.5243 -4.3695 6.9954 13 6 4.7160 -3.6189 8.6330 14 8 5.3262 -4.8640 8.9815 15 6 6.5404 -5.1377 8.2783 16 6 6.2424 -5.2426 6.7783 17 7 5.5061 -4.0370 6.3661 18 6 5.9082 -3.3011 5.2836 19 1 5.7394 -2.2346 5.2628 20 6 6.5330 -3.9259 4.2130 21 7 6.5509 -5.2397 4.1369 22 14 7.3481 -2.9019 2.8801 23 1 8.4182 -2.0669 3.4824 24 1 7.9385 -3.8013 1.8565 25 1 6.3352 -2.0236 2.2416 26 8 2.7419 -2.2526 2.4350 27 7 2.3775 -1.9620 1.3196 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4423 -0.0005 35 1 2.0512 0.8724 2.8235 36 1 3.5736 -3.1087 4.7928 37 1 4.6573 -1.5360 6.8732 38 1 2.9855 -1.9654 7.3076 39 1 5.4209 -2.8063 8.8087 40 1 3.8250 -3.4670 9.2423 41 1 6.9620 -6.0785 8.6323 42 1 7.2527 -4.3312 8.4525 43 1 5.6355 -6.1273 6.5855 44 1 7.1771 -5.3102 6.2216 45 1 6.9872 -5.6763 3.3887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051148691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:27 Heat of formation + Delta-G solvation = 3.138353 kcal Electronic energy + Delta-G solvation = -28522.563113 eV Core-core repulsion = 24544.471609 eV Total energy + Delta-G solvation = -3978.091504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -44.81091 -39.42512 -38.34341 -36.65653 -35.45514 -33.71018 -32.38311 -32.06167 -31.24572 -30.41824 -27.44500 -27.27838 -25.97065 -24.03576 -23.50843 -23.31780 -21.78463 -21.34153 -19.82802 -19.43906 -18.07001 -17.52105 -16.71635 -16.03320 -15.95506 -15.84208 -15.12391 -14.71452 -14.67979 -14.47488 -14.39906 -13.93325 -13.82110 -13.62019 -13.47383 -13.31762 -12.97622 -12.68425 -12.41189 -11.99640 -11.79044 -11.67245 -11.58323 -11.51412 -11.07704 -10.97879 -10.89214 -10.80957 -10.45984 -10.29498 -10.09640 -10.02930 -10.02656 -9.68289 -9.54257 -9.04559 -8.74746 -8.44456 -6.76476 -5.93884 -3.44018 1.05057 2.16513 2.90573 3.28642 3.34365 3.35338 3.37316 3.60137 3.98447 4.31972 4.48346 4.52512 4.84676 4.95659 4.98609 5.08769 5.19041 5.24952 5.30462 5.38136 5.48045 5.50508 5.58084 5.65285 5.68267 5.76339 5.80372 5.95647 5.97931 5.99642 6.02841 6.03464 6.10685 6.16146 6.30377 6.48285 6.66530 6.82153 7.04257 7.47125 7.65384 7.81412 7.86401 8.25567 8.28220 8.44868 9.02139 9.62653 10.21547 11.12564 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.004035 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.233277 B = 6936.873003 C = 8028.331202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.016 4.016 3 C -0.146 4.146 4 C 0.011 3.989 5 C -0.162 4.162 6 C -0.065 4.065 7 C 0.594 3.406 8 O -0.536 6.536 9 N -0.673 5.673 10 C 0.134 3.866 11 C 0.124 3.876 12 H 0.044 0.956 13 C 0.057 3.943 14 O -0.392 6.392 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.592 5.592 18 C -0.263 4.263 19 H 0.071 0.929 20 C 0.017 3.983 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.281 1.281 26 O 0.127 5.873 27 N -0.347 5.347 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.179 0.821 36 H 0.423 0.577 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.092 0.908 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.642 7.885 -2.220 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.185 4.185 6 C -0.131 4.131 7 C 0.377 3.623 8 O -0.415 6.415 9 N -0.324 5.324 10 C 0.010 3.990 11 C 0.017 3.983 12 H 0.061 0.939 13 C -0.023 4.023 14 O -0.310 6.310 15 C -0.043 4.043 16 C 0.019 3.981 17 N -0.317 5.317 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.184 4.184 21 N -0.538 5.538 22 Si 0.724 3.276 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.208 1.208 26 O 0.054 5.946 27 N -0.046 5.046 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.196 0.804 36 H 0.263 0.737 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.111 0.889 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.658 7.319 -2.639 11.640 hybrid contribution 0.734 0.895 -0.929 1.484 sum -7.924 8.213 -3.568 11.958 Atomic orbital electron populations 1.21823 0.93385 1.02446 1.02407 1.19507 0.96109 0.95420 0.92458 1.21853 1.01684 0.94278 1.02544 1.23555 1.03153 0.90670 0.97317 1.22683 1.03151 1.01149 0.91515 1.24393 1.05865 0.88199 0.94666 1.16532 0.78704 0.84719 0.82348 1.90807 1.56171 1.31337 1.63218 1.46012 1.61588 1.12598 1.12199 1.21312 0.99380 0.98227 0.80097 1.21445 0.91375 0.93522 0.91984 0.93870 1.22852 0.97171 0.86585 0.95651 1.87807 1.39899 1.38696 1.64630 1.23357 0.85608 0.99517 0.95843 1.21419 0.98516 0.88686 0.89496 1.44072 1.26312 1.29733 1.31620 1.19123 1.35856 0.90562 0.93695 0.91096 1.25108 1.00946 0.95363 0.96980 1.69945 1.45373 1.07071 1.31379 0.86490 0.79801 0.79580 0.81727 1.20877 1.21370 1.20756 1.85063 1.61596 1.34230 1.13730 1.73738 1.13955 1.17088 0.99868 0.91612 0.92086 0.92326 0.89355 0.91587 0.91884 0.92125 0.80396 0.73748 0.90843 0.91588 0.93429 0.89832 0.90222 0.94086 0.95190 0.88943 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 2 C -0.02 -0.17 3.38 -91.78 -0.31 -0.48 16 3 C -0.15 -1.30 8.80 37.15 0.33 -0.97 16 4 C 0.01 0.16 6.20 -82.16 -0.51 -0.35 16 5 C -0.16 -2.42 10.12 -38.94 -0.39 -2.81 16 6 C -0.06 -1.13 7.29 -36.31 -0.26 -1.39 16 7 C 0.59 10.98 7.82 -12.48 -0.10 10.88 16 8 O -0.54 -10.65 16.91 5.29 0.09 -10.56 16 9 N -0.67 -12.48 3.77 -61.36 -0.23 -12.71 16 10 C 0.13 2.33 4.45 -4.04 -0.02 2.31 16 11 C 0.12 2.32 3.21 -67.42 -0.22 2.11 16 12 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 13 C 0.06 0.95 6.29 37.31 0.23 1.19 16 14 O -0.39 -7.40 10.74 -35.23 -0.38 -7.78 16 15 C 0.03 0.65 6.98 37.31 0.26 0.91 16 16 C 0.14 3.21 5.38 -3.53 -0.02 3.19 16 17 N -0.59 -13.31 3.03 -164.30 -0.50 -13.81 16 18 C -0.26 -6.41 7.05 -15.06 -0.11 -6.52 16 19 H 0.07 1.75 5.81 -52.48 -0.30 1.44 16 20 C 0.02 0.43 5.06 -17.43 -0.09 0.34 16 21 N -0.89 -24.05 11.13 55.49 0.62 -23.43 16 22 Si 0.89 21.18 29.57 -169.99 -5.03 16.15 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 O 0.13 2.35 11.04 15.55 0.17 2.52 16 27 N -0.35 -6.07 12.04 33.52 0.40 -5.67 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.52 7.48 -51.93 -0.39 0.14 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.18 2.24 7.65 -52.49 -0.40 1.83 16 36 H 0.42 8.41 7.14 -40.82 -0.29 8.12 16 37 H 0.07 1.37 7.57 -51.93 -0.39 0.98 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.27 6.33 -51.93 -0.33 1.95 16 45 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -28.90 366.91 -6.92 -35.82 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.74 Total: 6.47 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.86 Total: 7.47 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.29 Total: -55.62 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.12 Total: -15.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.90 -6.92 -35.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051148691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.956 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds