Wall clock time and date at job start Tue Mar 31 2020 15:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52988 * 109.47647 * 2 1 4 4 C 1.50701 * 109.47073 * 120.00217 * 2 1 3 5 5 C 1.41265 * 126.70335 * 274.71372 * 4 2 1 6 6 C 1.36831 * 103.84517 * 179.85485 * 5 4 2 7 7 C 1.47510 * 126.93874 * 180.12309 * 6 5 4 8 8 O 1.21583 * 120.00715 * 0.29941 * 7 6 5 9 9 N 1.34783 * 119.99689 * 180.29489 * 7 6 5 10 10 C 1.46494 * 119.99945 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47110 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.67687 * 300.06625 * 11 10 9 13 13 C 1.53289 * 109.68223 * 179.51106 * 11 10 9 14 14 O 1.42964 * 109.22278 * 187.97847 * 13 11 10 15 15 C 1.42963 * 114.16830 * 62.57687 * 14 13 11 16 16 C 1.53296 * 109.22255 * 297.41951 * 15 14 13 17 17 N 1.47151 * 109.67998 * 60.58305 * 11 10 9 18 18 C 1.36935 * 120.98169 * 350.23202 * 17 11 10 19 19 H 1.08003 * 120.00017 * 31.20711 * 18 17 11 20 20 C 1.38814 * 120.00068 * 211.19345 * 18 17 11 21 21 N 1.31611 * 120.00003 * 10.77652 * 20 18 17 22 22 Si 1.86803 * 119.99860 * 190.76858 * 20 18 17 23 23 H 1.48494 * 109.46912 * 60.00586 * 22 20 18 24 24 H 1.48498 * 109.46989 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47166 * 300.00482 * 22 20 18 26 26 O 1.34643 * 106.11317 * 0.39276 * 6 5 4 27 27 N 1.20887 * 111.46531 * 359.72847 * 26 6 5 28 28 H 1.09001 * 109.46914 * 59.99798 * 1 2 3 29 29 H 1.09004 * 109.46809 * 300.00276 * 1 2 3 30 30 H 1.08991 * 109.47676 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46953 * 239.99237 * 2 1 3 32 32 H 1.09001 * 109.47129 * 300.00071 * 3 2 1 33 33 H 1.09000 * 109.47567 * 59.99613 * 3 2 1 34 34 H 1.09000 * 109.47325 * 180.02562 * 3 2 1 35 35 H 1.07996 * 128.07650 * 359.96664 * 5 4 2 36 36 H 0.97004 * 119.99700 * 0.02562 * 9 7 6 37 37 H 1.08991 * 109.47941 * 300.00949 * 10 9 7 38 38 H 1.09001 * 109.46674 * 60.01020 * 10 9 7 39 39 H 1.08998 * 109.51533 * 307.89727 * 13 11 10 40 40 H 1.09000 * 109.51943 * 68.04890 * 13 11 10 41 41 H 1.09001 * 109.51144 * 177.49934 * 15 14 13 42 42 H 1.08999 * 109.55439 * 57.37255 * 15 14 13 43 43 H 1.09005 * 109.68417 * 292.58099 * 16 15 14 44 44 H 1.09000 * 109.70947 * 172.04314 * 16 15 14 45 45 H 0.96996 * 120.00167 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2260 -0.1465 2.5111 6 6 2.6843 -1.1932 3.2639 7 6 3.0480 -1.1648 4.6932 8 8 2.9467 -0.1316 5.3260 9 7 3.4925 -2.2844 5.2977 10 6 3.8543 -2.2562 6.7170 11 6 4.3245 -3.6459 7.1512 12 1 3.5243 -4.3695 6.9954 13 6 4.7160 -3.6189 8.6330 14 8 5.3262 -4.8640 8.9815 15 6 6.5404 -5.1377 8.2783 16 6 6.2424 -5.2426 6.7783 17 7 5.5061 -4.0370 6.3661 18 6 5.9082 -3.3011 5.2836 19 1 5.7394 -2.2346 5.2628 20 6 6.5330 -3.9259 4.2130 21 7 6.5509 -5.2397 4.1369 22 14 7.3481 -2.9019 2.8801 23 1 8.4182 -2.0669 3.4824 24 1 7.9385 -3.8013 1.8565 25 1 6.3352 -2.0236 2.2416 26 8 2.7419 -2.2526 2.4350 27 7 2.3775 -1.9620 1.3196 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4423 -0.0005 35 1 2.0512 0.8724 2.8235 36 1 3.5736 -3.1087 4.7928 37 1 4.6573 -1.5360 6.8732 38 1 2.9855 -1.9654 7.3076 39 1 5.4209 -2.8063 8.8087 40 1 3.8250 -3.4670 9.2423 41 1 6.9620 -6.0785 8.6323 42 1 7.2527 -4.3312 8.4525 43 1 5.6355 -6.1273 6.5855 44 1 7.1771 -5.3102 6.2216 45 1 6.9872 -5.6763 3.3887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051148691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:26 Heat of formation + Delta-G solvation = -15.264638 kcal Electronic energy + Delta-G solvation = -28523.361127 eV Core-core repulsion = 24544.471609 eV Total energy + Delta-G solvation = -3978.889518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.07599 -40.92898 -39.87919 -37.62570 -37.00773 -35.40391 -33.62434 -33.45072 -32.76762 -32.02426 -29.03517 -28.13548 -27.42675 -25.26635 -25.12043 -24.71648 -23.24821 -22.55870 -21.43592 -20.76791 -19.40120 -18.83069 -18.40616 -17.62594 -17.39689 -17.21775 -16.58444 -16.27113 -16.17335 -15.83952 -15.45924 -15.38018 -15.27337 -15.04266 -14.76482 -14.59679 -14.31690 -14.17135 -13.59988 -13.15058 -13.06570 -12.94264 -12.82732 -12.74045 -12.53796 -12.51895 -12.29422 -12.20746 -11.99970 -11.86696 -11.83492 -11.53007 -11.26221 -11.17156 -10.87508 -10.67626 -10.57204 -10.01889 -8.62868 -7.90064 -5.39859 -0.29284 0.98602 1.36436 1.40760 1.43377 1.57068 1.91753 2.22027 2.41700 2.93262 3.05599 3.26454 3.37446 3.46523 3.84929 3.91327 4.00182 4.07174 4.11404 4.23515 4.24346 4.34630 4.46071 4.49394 4.59791 4.64998 4.67971 4.76075 4.77091 4.83207 4.91353 4.92339 5.02623 5.10980 5.11786 5.28945 5.29852 5.32322 5.34742 5.64085 5.66654 6.30306 6.31934 6.40373 6.89362 7.02863 7.09222 7.75423 8.31053 9.14209 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.004035 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.233277 B = 6936.873003 C = 8028.331202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.019 4.019 3 C -0.143 4.143 4 C 0.023 3.977 5 C -0.147 4.147 6 C -0.089 4.089 7 C 0.598 3.402 8 O -0.551 6.551 9 N -0.679 5.679 10 C 0.138 3.862 11 C 0.123 3.877 12 H 0.038 0.962 13 C 0.058 3.942 14 O -0.397 6.397 15 C 0.047 3.953 16 C 0.149 3.851 17 N -0.606 5.606 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.027 4.027 21 N -0.922 5.922 22 Si 0.937 3.063 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.288 1.288 26 O 0.096 5.904 27 N -0.374 5.374 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.204 0.796 36 H 0.415 0.585 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.005 0.995 44 H 0.065 0.935 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 9.985 -1.708 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 C -0.201 4.201 4 C -0.135 4.135 5 C -0.169 4.169 6 C -0.154 4.154 7 C 0.382 3.618 8 O -0.431 6.431 9 N -0.328 5.328 10 C 0.014 3.986 11 C 0.017 3.983 12 H 0.056 0.944 13 C -0.020 4.020 14 O -0.316 6.316 15 C -0.030 4.030 16 C 0.023 3.977 17 N -0.332 5.332 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.224 4.224 21 N -0.568 5.568 22 Si 0.767 3.233 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.215 1.215 26 O 0.028 5.972 27 N -0.078 5.078 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.221 0.779 36 H 0.253 0.747 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.139 0.861 41 H 0.121 0.879 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.083 0.917 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.875 9.427 -2.067 13.808 hybrid contribution 1.019 0.307 -1.106 1.535 sum -8.856 9.734 -3.173 13.537 Atomic orbital electron populations 1.21814 0.91689 1.02137 1.03976 1.19780 0.97419 0.96172 0.90463 1.21870 1.00964 0.92982 1.04276 1.24271 1.00964 0.89760 0.98531 1.23082 1.01135 1.01585 0.91077 1.24409 1.07502 0.89032 0.94501 1.16587 0.78183 0.84300 0.82733 1.90786 1.56966 1.31575 1.63779 1.46058 1.61717 1.12334 1.12661 1.21355 1.00230 0.97025 0.79957 1.21609 0.89774 0.93970 0.92939 0.94394 1.22998 0.98676 0.85990 0.94365 1.87811 1.39790 1.39700 1.64287 1.23194 0.85882 1.00974 0.92997 1.21244 0.96747 0.87837 0.91848 1.44297 1.27872 1.29450 1.31608 1.19204 1.33856 0.90562 0.93629 0.91203 1.25533 1.02461 0.95835 0.98552 1.70058 1.47043 1.07970 1.31699 0.85815 0.78913 0.78332 0.80210 1.20624 1.22166 1.21484 1.85035 1.62925 1.35000 1.14247 1.73741 1.15490 1.18826 0.99729 0.88981 0.91602 0.93593 0.89429 0.89058 0.91039 0.93274 0.77871 0.74703 0.91818 0.88637 0.92889 0.86116 0.87899 0.93658 0.97651 0.91667 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 2 C -0.02 -0.37 3.38 -11.54 -0.04 -0.41 16 3 C -0.14 -2.13 8.80 71.98 0.63 -1.50 16 4 C 0.02 0.65 6.20 43.56 0.27 0.92 16 5 C -0.15 -4.17 10.12 22.68 0.23 -3.94 16 6 C -0.09 -3.08 7.29 24.39 0.18 -2.90 16 7 C 0.60 21.86 7.82 86.69 0.68 22.54 16 8 O -0.55 -21.22 16.91 -3.98 -0.07 -21.28 16 9 N -0.68 -25.04 3.77 -466.31 -1.76 -26.80 16 10 C 0.14 4.61 4.45 86.38 0.38 5.00 16 11 C 0.12 4.48 3.21 44.97 0.14 4.62 16 12 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 13 C 0.06 1.81 6.29 72.08 0.45 2.26 16 14 O -0.40 -14.07 10.74 -148.98 -1.60 -15.67 16 15 C 0.05 1.71 6.98 72.08 0.50 2.22 16 16 C 0.15 6.71 5.38 86.35 0.46 7.17 16 17 N -0.61 -27.30 3.03 -673.72 -2.04 -29.35 16 18 C -0.24 -11.92 7.05 84.03 0.59 -11.33 16 19 H 0.07 3.45 5.81 -2.91 -0.02 3.43 16 20 C -0.03 -1.39 5.06 84.86 0.43 -0.96 16 21 N -0.92 -51.25 11.13 21.65 0.24 -51.01 16 22 Si 0.94 44.48 29.57 68.60 2.03 46.51 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 O 0.10 3.65 11.04 65.82 0.73 4.37 16 27 N -0.37 -13.19 12.04 -48.84 -0.59 -13.78 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.95 7.48 -2.39 -0.02 0.93 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.20 4.58 7.65 -2.91 -0.02 4.56 16 36 H 0.42 16.87 7.14 -92.70 -0.66 16.20 16 37 H 0.06 2.28 7.57 -2.39 -0.02 2.27 16 38 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.06 3.29 6.33 -2.39 -0.02 3.28 16 45 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -63.28 366.91 2.87 -60.41 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.35 Total: 24.38 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 5.58 Total: 22.22 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -4.15 Total: -120.93 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.94 Total: -32.58 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.28 2.87 -60.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051148691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.143 kcal (2) G-P(sol) polarization free energy of solvation -63.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds