Wall clock time and date at job start Tue Mar 31 2020 17:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50697 * 119.99817 * 2 1 4 4 C 1.33110 * 119.99677 * 179.97438 * 2 1 3 5 5 F 1.35107 * 119.99893 * 178.84726 * 4 2 1 6 6 C 1.47298 * 120.00447 * 358.85094 * 4 2 1 7 7 O 1.21605 * 119.99535 * 353.79404 * 6 4 2 8 8 N 1.34774 * 120.00312 * 173.79484 * 6 4 2 9 9 C 1.47432 * 125.64782 * 359.97401 * 8 6 4 10 10 C 1.54908 * 104.83186 * 204.15354 * 9 8 6 11 11 H 1.09000 * 111.03954 * 81.07985 * 10 9 8 12 12 N 1.46499 * 110.99820 * 204.91918 * 10 9 8 13 13 C 1.36940 * 119.99831 * 267.18889 * 12 10 9 14 14 H 1.07999 * 120.00086 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00406 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99622 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00396 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47087 * 59.99880 * 17 15 13 19 19 H 1.48501 * 109.47138 * 299.99878 * 17 15 13 20 20 H 1.48499 * 109.47271 * 179.97438 * 17 15 13 21 21 C 1.55155 * 101.57971 * 322.98968 * 10 9 8 22 22 H 1.09000 * 110.72478 * 153.87014 * 21 10 9 23 23 N 1.46504 * 110.72107 * 276.96535 * 21 10 9 24 24 C 1.35311 * 125.87087 * 84.71578 * 23 21 10 25 25 C 1.35349 * 106.17489 * 179.90924 * 24 23 21 26 26 N 1.33773 * 106.49922 * 0.34784 * 25 24 23 27 27 N 1.28633 * 108.88315 * 359.77828 * 26 25 24 28 28 C 1.47015 * 125.64947 * 180.02562 * 8 6 4 29 29 H 1.08996 * 109.47261 * 241.25203 * 1 2 3 30 30 H 1.09005 * 109.46986 * 1.24620 * 1 2 3 31 31 H 1.08993 * 109.47136 * 121.24932 * 1 2 3 32 32 H 1.09005 * 109.47122 * 269.99754 * 3 2 1 33 33 H 1.08999 * 109.47191 * 30.00032 * 3 2 1 34 34 H 1.09000 * 109.47191 * 149.99869 * 3 2 1 35 35 H 1.09000 * 110.36413 * 85.30837 * 9 8 6 36 36 H 1.08999 * 110.36295 * 322.99004 * 9 8 6 37 37 H 0.97002 * 120.00099 * 87.20023 * 12 10 9 38 38 H 0.97002 * 119.99758 * 359.97438 * 16 15 13 39 39 H 1.08001 * 126.91014 * 0.02562 * 24 23 21 40 40 H 1.08005 * 126.74847 * 180.12548 * 25 24 23 41 41 H 1.08996 * 109.88300 * 59.50134 * 28 8 6 42 42 H 1.08994 * 109.88501 * 298.33322 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1528 0.0005 5 9 3.5234 -1.1530 -0.0230 6 6 1.4363 -2.4283 0.0267 7 8 0.2278 -2.4300 0.1616 8 7 2.1020 -3.5934 -0.0989 9 6 3.5596 -3.7363 -0.2685 10 6 3.7452 -5.1067 -0.9663 11 1 3.5753 -5.0253 -2.0399 12 7 5.0719 -5.6622 -0.6880 13 6 6.1092 -5.4219 -1.5491 14 1 5.9493 -4.8226 -2.4332 15 6 7.3662 -5.9486 -1.2857 16 7 7.5610 -6.6794 -0.2085 17 14 8.7813 -5.6202 -2.4600 18 1 9.0177 -4.1571 -2.5533 19 1 8.4433 -6.1537 -3.8040 20 1 10.0080 -6.2882 -1.9559 21 6 2.6347 -5.9535 -0.2902 22 1 2.3154 -6.7643 -0.9449 23 7 3.0957 -6.4800 0.9969 24 6 3.0576 -5.8258 2.1807 25 6 3.5763 -6.6753 3.0979 26 7 3.9092 -7.7902 2.4376 27 7 3.6117 -7.6426 1.1949 28 6 1.4950 -4.9324 -0.0905 29 1 -0.3633 -0.4942 0.9010 30 1 -0.3633 1.0275 -0.0224 31 1 -0.3633 -0.5331 -0.8785 32 1 2.4422 1.6198 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1748 0.5138 35 1 4.0563 -3.7341 0.7018 36 1 3.9487 -2.9349 -0.8966 37 1 5.2156 -6.2003 0.1062 38 1 6.8262 -6.8496 0.4015 39 1 2.6862 -4.8273 2.3583 40 1 3.7007 -6.4884 4.1543 41 1 0.7740 -5.0176 -0.9035 42 1 1.0018 -5.1098 0.8652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070175433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:53 Heat of formation + Delta-G solvation = 71.970554 kcal Electronic energy + Delta-G solvation = -28493.858766 eV Core-core repulsion = 24427.584496 eV Total energy + Delta-G solvation = -4066.274270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.99196 -43.02812 -40.20041 -38.28954 -35.45344 -34.55909 -33.73012 -31.33843 -30.75474 -29.87545 -28.23422 -27.74292 -27.42188 -24.44622 -23.62777 -22.37959 -22.04109 -21.00726 -20.20105 -18.94039 -17.94461 -17.81222 -17.23832 -16.35078 -16.31907 -15.94839 -15.53548 -15.04736 -14.78053 -14.49305 -14.31019 -14.00615 -13.80374 -13.70266 -13.51845 -13.31546 -13.19782 -13.04200 -12.68683 -12.49238 -12.46442 -12.28684 -11.89954 -11.59068 -11.38697 -11.28280 -10.82207 -10.80375 -10.58174 -10.08340 -9.97099 -9.81070 -9.34911 -9.25274 -9.11878 -9.05580 -8.68130 -7.32589 -6.24805 -3.31620 0.91930 1.90239 2.46537 2.68329 2.84036 2.93428 3.44711 3.47791 3.66099 3.86717 4.11173 4.37855 4.48436 4.56056 4.60189 4.73981 4.82038 4.97693 5.07953 5.19301 5.21160 5.28285 5.38112 5.41077 5.48420 5.50265 5.51941 5.57325 5.58353 5.72485 5.74103 5.86640 5.97196 6.04376 6.09710 6.26054 6.30020 6.42983 6.86662 7.23640 7.60414 7.80225 8.58745 8.86409 8.96812 9.84957 9.93413 11.21220 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.004856 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.876027 B = 5765.135337 C = 7567.565329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.076 4.076 3 C -0.125 4.125 4 C -0.018 4.018 5 F -0.130 7.130 6 C 0.563 3.437 7 O -0.527 6.527 8 N -0.608 5.608 9 C 0.061 3.939 10 C 0.173 3.827 11 H 0.095 0.905 12 N -0.714 5.714 13 C -0.356 4.356 14 H 0.070 0.930 15 C -0.031 4.031 16 N -0.926 5.926 17 Si 1.082 2.918 18 H -0.293 1.293 19 H -0.293 1.293 20 H -0.283 1.283 21 C 0.110 3.890 22 H 0.134 0.866 23 N -0.271 5.271 24 C -0.051 4.051 25 C -0.054 4.054 26 N -0.271 5.271 27 N -0.068 5.068 28 C 0.108 3.892 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.376 0.624 38 H 0.259 0.741 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.098 0.902 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.990 12.976 1.250 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.080 4.080 3 C -0.181 4.181 4 C -0.040 4.040 5 F -0.108 7.108 6 C 0.352 3.648 7 O -0.407 6.407 8 N -0.342 5.342 9 C -0.065 4.065 10 C 0.057 3.943 11 H 0.112 0.888 12 N -0.355 5.355 13 C -0.486 4.486 14 H 0.088 0.912 15 C -0.231 4.231 16 N -0.568 5.568 17 Si 0.912 3.088 18 H -0.220 1.220 19 H -0.220 1.220 20 H -0.208 1.208 21 C 0.005 3.995 22 H 0.151 0.849 23 N -0.064 5.064 24 C -0.202 4.202 25 C -0.211 4.211 26 N -0.137 5.137 27 N -0.048 5.048 28 C -0.016 4.016 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.212 0.788 38 H 0.071 0.929 39 H 0.195 0.805 40 H 0.202 0.798 41 H 0.116 0.884 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.514 11.460 0.196 17.720 hybrid contribution -1.530 1.372 1.000 2.286 sum -15.044 12.832 1.196 19.809 Atomic orbital electron populations 1.20907 0.88877 1.01802 1.04527 1.22710 0.97971 0.93627 0.93643 1.20931 1.00369 0.93478 1.03356 1.19261 0.77508 0.93916 1.13315 1.91504 1.28234 1.96864 1.94223 1.17903 0.86684 0.82509 0.77703 1.90815 1.12725 1.86372 1.50745 1.48424 1.09849 1.04796 1.71133 1.23941 0.77528 1.02618 1.02403 1.21633 0.85760 0.88990 0.97884 0.88766 1.42336 1.04150 1.60388 1.28619 1.19982 0.90628 1.32934 1.05075 0.91208 1.25901 0.98830 0.97345 1.01053 1.70862 1.34487 1.38846 1.12622 0.83237 0.75810 0.75588 0.74210 1.22041 1.21964 1.20833 1.23249 0.96750 0.97920 0.81549 0.84860 1.47280 1.39628 1.11200 1.08342 1.23439 1.09325 1.01764 0.85658 1.23509 1.04600 0.91631 1.01405 1.75135 1.17891 1.22896 0.97775 1.78420 1.12820 1.01005 1.12518 1.22172 0.94456 0.80950 1.04011 0.89367 0.92117 0.90022 0.89932 0.90448 0.90674 0.90918 0.88790 0.78827 0.92949 0.80453 0.79769 0.88428 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 8.33 36.01 0.30 -0.67 16 2 C -0.08 -0.79 6.12 -101.13 -0.62 -1.40 16 3 C -0.12 -0.99 9.76 36.00 0.35 -0.64 16 4 C -0.02 -0.23 7.22 -37.68 -0.27 -0.50 16 5 F -0.13 -1.83 13.23 2.25 0.03 -1.80 16 6 C 0.56 7.70 7.75 -12.58 -0.10 7.61 16 7 O -0.53 -7.66 13.47 5.27 0.07 -7.59 16 8 N -0.61 -8.24 3.33 -171.84 -0.57 -8.81 16 9 C 0.06 0.97 5.25 -2.53 -0.01 0.96 16 10 C 0.17 3.05 3.58 -65.78 -0.24 2.82 16 11 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16 12 N -0.71 -16.91 5.20 -51.35 -0.27 -17.18 16 13 C -0.36 -9.52 9.96 -15.06 -0.15 -9.67 16 14 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 15 C -0.03 -0.89 5.50 -17.43 -0.10 -0.99 16 16 N -0.93 -28.72 13.70 55.49 0.76 -27.96 16 17 Si 1.08 25.26 29.92 -169.99 -5.09 20.18 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 C 0.11 1.61 3.96 -66.09 -0.26 1.35 16 22 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 23 N -0.27 -4.58 2.38 -52.98 -0.13 -4.71 16 24 C -0.05 -0.78 9.36 -17.05 -0.16 -0.94 16 25 C -0.05 -0.87 12.05 -17.74 -0.21 -1.09 16 26 N -0.27 -5.41 12.41 30.24 0.38 -5.04 16 27 N -0.07 -1.38 12.28 60.35 0.74 -0.64 16 28 C 0.11 1.31 5.92 -3.07 -0.02 1.29 16 29 H 0.09 0.91 7.07 -51.93 -0.37 0.54 16 30 H 0.06 0.41 7.95 -51.93 -0.41 0.00 16 31 H 0.08 0.83 7.40 -51.93 -0.38 0.44 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.46 8.06 -51.93 -0.42 0.05 16 34 H 0.07 0.65 7.56 -51.93 -0.39 0.25 16 35 H 0.07 1.29 7.58 -51.93 -0.39 0.89 16 36 H 0.09 1.56 6.30 -51.93 -0.33 1.24 16 37 H 0.38 9.60 4.83 -40.82 -0.20 9.41 16 38 H 0.26 8.18 6.77 -40.82 -0.28 7.90 16 39 H 0.18 2.29 7.72 -52.49 -0.41 1.88 16 40 H 0.19 2.27 8.06 -52.48 -0.42 1.84 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 0.97 7.19 -51.93 -0.37 0.59 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -33.45 348.85 -5.57 -39.01 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.27 Total: 11.15 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.48 Total: -1.87 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: 0.91 Total: -64.33 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.07 Total: -7.59 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.03 Total: -1.80 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.09 Total: 20.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.45 -5.57 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070175433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.985 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds