Wall clock time and date at job start Tue Mar 31 2020 17:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46895 * 2 1 4 4 C 1.35731 * 116.99610 * 180.02562 * 3 2 1 5 5 C 1.41850 * 126.78734 * 180.02562 * 4 3 2 6 6 C 1.36666 * 103.81536 * 180.02562 * 5 4 3 7 7 C 1.47538 * 126.88032 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00072 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00172 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00395 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.77944 * 323.20965 * 10 9 7 12 12 C 1.55155 * 110.72166 * 86.45075 * 10 9 7 13 13 C 1.54919 * 101.58150 * 153.86772 * 12 10 9 14 14 N 1.47426 * 104.83046 * 322.99093 * 13 12 10 15 15 C 1.36934 * 125.64350 * 204.09380 * 14 13 12 16 16 H 1.08009 * 119.99580 * 154.01885 * 15 14 13 17 17 C 1.38804 * 120.00285 * 334.01225 * 15 14 13 18 18 N 1.31621 * 120.00316 * 334.84121 * 17 15 14 19 19 Si 1.86803 * 119.99924 * 154.83885 * 17 15 14 20 20 H 1.48504 * 109.46817 * 90.00557 * 19 17 15 21 21 H 1.48499 * 109.47385 * 330.00167 * 19 17 15 22 22 H 1.48505 * 109.47293 * 210.00051 * 19 17 15 23 23 C 1.47019 * 108.70460 * 24.35286 * 14 13 12 24 24 H 1.08994 * 109.88863 * 239.29761 * 23 14 13 25 25 C 1.53006 * 109.88134 * 118.12921 * 23 14 13 26 26 C 1.53000 * 109.46643 * 65.71875 * 25 23 14 27 27 O 1.34660 * 106.23897 * 0.24058 * 6 5 4 28 28 N 1.20883 * 111.63035 * 359.56254 * 27 6 5 29 29 H 1.08998 * 109.47311 * 59.99400 * 1 2 3 30 30 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46685 * 299.99846 * 1 2 3 32 32 H 1.08999 * 109.46531 * 240.00429 * 2 1 3 33 33 H 1.08998 * 109.47311 * 120.00600 * 2 1 3 34 34 H 1.08003 * 128.09384 * 0.04557 * 5 4 3 35 35 H 0.97006 * 119.99758 * 359.97438 * 9 7 6 36 36 H 1.08999 * 111.00589 * 35.79000 * 12 10 9 37 37 H 1.09000 * 111.00554 * 271.93855 * 12 10 9 38 38 H 1.08997 * 110.36502 * 204.14890 * 13 12 10 39 39 H 1.09001 * 110.36410 * 81.82771 * 13 12 10 40 40 H 0.96996 * 119.99635 * 353.73227 * 18 17 15 41 41 H 1.09000 * 109.47212 * 185.72012 * 25 23 14 42 42 H 1.08996 * 109.46911 * 305.72084 * 25 23 14 43 43 H 1.09000 * 109.47383 * 291.79134 * 26 25 23 44 44 H 1.09006 * 109.47178 * 51.79643 * 26 25 23 45 45 H 1.09003 * 109.47043 * 171.79480 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0453 2.7626 -0.0001 6 6 5.3626 2.3987 -0.0016 7 6 6.5303 3.3004 -0.0024 8 8 6.3680 4.5053 -0.0022 9 7 7.7770 2.7885 -0.0033 10 6 8.9366 3.6838 -0.0047 11 1 8.7434 4.5659 -0.6152 12 6 9.3175 4.0910 1.4432 13 6 10.8281 4.3996 1.2923 14 7 11.3235 3.3985 0.3300 15 6 12.6181 2.9649 0.2250 16 1 12.8282 1.9841 -0.1755 17 6 13.6603 3.7859 0.6330 18 7 13.5021 5.0925 0.6471 19 14 15.2874 3.0364 1.1623 20 1 16.1802 2.9080 -0.0175 21 1 15.0464 1.6937 1.7492 22 1 15.9293 3.9116 2.1758 23 6 10.1985 2.9475 -0.5022 24 1 10.0647 1.8713 -0.3931 25 6 10.4634 3.2960 -1.9683 26 6 11.6628 2.4922 -2.4748 27 8 5.3812 1.0522 -0.0081 28 7 4.2638 0.5911 -0.0021 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.6294 3.7594 0.0013 35 1 7.9066 1.8271 -0.0030 36 1 9.1546 3.2660 2.1368 37 1 8.7671 4.9778 1.7573 38 1 11.3356 4.2883 2.2505 39 1 10.9723 5.4064 0.9004 40 1 12.6922 5.4868 0.2875 41 1 9.5843 3.0515 -2.5645 42 1 10.6769 4.3612 -2.0557 43 1 12.5690 2.8405 -1.9792 44 1 11.5112 1.4355 -2.2542 45 1 11.7625 2.6280 -3.5517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087660708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:58 Heat of formation + Delta-G solvation = 11.733180 kcal Electronic energy + Delta-G solvation = -27456.964798 eV Core-core repulsion = 23479.245993 eV Total energy + Delta-G solvation = -3977.718805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.24795 -39.95104 -39.35401 -37.99984 -34.53679 -33.77353 -32.67768 -32.44170 -31.78922 -31.44559 -28.70677 -27.08537 -25.12292 -24.28296 -23.67696 -23.17188 -21.81558 -21.07252 -20.40615 -19.96290 -18.84764 -18.24402 -17.39494 -17.23713 -16.38425 -16.33000 -16.16590 -15.04728 -14.90044 -14.65049 -14.36697 -13.98481 -13.79174 -13.60178 -13.51383 -13.19662 -13.12606 -12.94086 -12.44793 -12.35176 -12.21228 -11.70229 -11.64291 -11.58235 -11.13231 -10.99438 -10.79600 -10.59682 -10.42643 -10.19314 -10.16510 -10.12600 -10.05419 -9.87298 -9.64917 -9.45222 -8.96176 -8.41835 -6.93543 -6.07676 -3.24585 0.51835 1.80170 2.24026 2.36843 2.84900 3.20099 3.48089 3.52660 3.67267 3.77738 4.37273 4.44096 4.52688 4.54341 4.66872 4.76849 4.88107 5.04798 5.16005 5.24022 5.28422 5.30972 5.37268 5.39571 5.53732 5.62438 5.88096 5.93811 5.95047 6.11394 6.19805 6.28572 6.42460 6.54929 6.59585 6.61163 6.70923 6.91056 6.98715 7.06183 7.28626 7.32335 7.75146 7.84360 7.93638 8.47265 8.99025 9.76716 10.34403 11.20281 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.002393 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.745340 B =11696.435866 C =11864.537080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.157 4.157 6 C -0.051 4.051 7 C 0.603 3.397 8 O -0.509 6.509 9 N -0.695 5.695 10 C 0.133 3.867 11 H 0.098 0.902 12 C -0.145 4.145 13 C 0.143 3.857 14 N -0.589 5.589 15 C -0.325 4.325 16 H 0.064 0.936 17 C -0.024 4.024 18 N -0.913 5.913 19 Si 1.065 2.935 20 H -0.294 1.294 21 H -0.292 1.292 22 H -0.286 1.286 23 C 0.156 3.844 24 H 0.040 0.960 25 C -0.123 4.123 26 C -0.149 4.149 27 O 0.117 5.883 28 N -0.391 5.391 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.190 0.810 35 H 0.407 0.593 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.031 0.969 40 H 0.270 0.730 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.039 0.961 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.256 -8.552 -1.721 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.180 4.180 6 C -0.117 4.117 7 C 0.385 3.615 8 O -0.384 6.384 9 N -0.345 5.345 10 C 0.029 3.971 11 H 0.116 0.884 12 C -0.184 4.184 13 C 0.017 3.983 14 N -0.315 5.315 15 C -0.453 4.453 16 H 0.081 0.919 17 C -0.227 4.227 18 N -0.552 5.552 19 Si 0.895 3.105 20 H -0.222 1.222 21 H -0.219 1.219 22 H -0.212 1.212 23 C 0.049 3.951 24 H 0.057 0.943 25 C -0.163 4.163 26 C -0.206 4.206 27 O 0.051 5.949 28 N -0.115 5.115 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.207 0.793 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.039 -8.490 -1.090 21.791 hybrid contribution -1.760 -0.302 -0.759 1.940 sum -21.799 -8.792 -1.849 23.578 Atomic orbital electron populations 1.21801 0.92057 1.03286 1.03739 1.22857 0.95985 0.80448 1.02541 1.86222 1.12921 1.30369 1.89274 1.21835 0.85878 0.90470 1.00852 1.22177 0.90075 0.99292 1.06454 1.24190 0.96707 0.84252 1.06587 1.16459 0.81064 0.86080 0.77928 1.90891 1.84780 1.12751 1.50009 1.45988 1.04886 1.11252 1.72404 1.22269 0.83690 0.92960 0.98181 0.88376 1.23221 0.98694 1.01159 0.95362 1.21563 0.89330 0.93253 0.94118 1.44508 1.04194 1.48931 1.33898 1.19601 0.81049 0.99144 1.45534 0.91862 1.25837 1.01643 0.94866 1.00323 1.70739 1.29142 1.10051 1.45314 0.83535 0.75421 0.74762 0.76776 1.22168 1.21865 1.21227 1.21213 0.87000 0.96209 0.90704 0.94268 1.21896 0.97317 1.00534 0.96561 1.21891 1.01325 0.98919 0.98497 1.84963 1.22842 1.18638 1.68444 1.74006 0.90426 1.22121 1.24940 0.91296 0.89879 0.91286 0.91471 0.91464 0.79255 0.75763 0.91350 0.91280 0.92962 0.95104 0.91832 0.94203 0.92470 0.88935 0.94225 0.95180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.06 0.44 6.38 37.16 0.24 0.67 16 3 O -0.28 -2.94 10.21 -18.90 -0.19 -3.14 16 4 C 0.21 2.40 8.00 -16.72 -0.13 2.27 16 5 C -0.16 -1.78 10.97 -38.77 -0.43 -2.20 16 6 C -0.05 -0.62 7.29 -36.36 -0.26 -0.88 16 7 C 0.60 8.38 7.82 -12.47 -0.10 8.28 16 8 O -0.51 -8.52 16.64 5.30 0.09 -8.44 16 9 N -0.70 -9.46 5.20 -53.06 -0.28 -9.74 16 10 C 0.13 2.21 2.76 -66.09 -0.18 2.03 16 11 H 0.10 1.74 7.40 -51.93 -0.38 1.35 16 12 C -0.14 -2.55 6.77 -24.58 -0.17 -2.72 16 13 C 0.14 3.14 5.56 -2.52 -0.01 3.13 16 14 N -0.59 -13.61 2.92 -162.56 -0.47 -14.09 16 15 C -0.33 -8.38 7.22 -15.06 -0.11 -8.49 16 16 H 0.06 1.64 7.24 -52.48 -0.38 1.26 16 17 C -0.02 -0.64 5.17 -17.43 -0.09 -0.73 16 18 N -0.91 -26.38 13.05 55.49 0.72 -25.66 16 19 Si 1.07 24.44 29.99 -169.99 -5.10 19.34 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.16 2.95 3.00 -66.94 -0.20 2.75 16 24 H 0.04 0.73 7.69 -51.93 -0.40 0.33 16 25 C -0.12 -2.28 5.47 -26.73 -0.15 -2.43 16 26 C -0.15 -2.83 8.98 37.16 0.33 -2.50 16 27 O 0.12 1.39 11.03 15.50 0.17 1.56 16 28 N -0.39 -4.77 11.50 30.47 0.35 -4.42 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.19 1.83 8.06 -52.48 -0.42 1.40 16 35 H 0.41 4.73 8.14 -40.82 -0.33 4.40 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.03 0.73 6.73 -51.93 -0.35 0.38 16 40 H 0.27 7.85 6.20 -40.82 -0.25 7.59 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 2.08 5.52 -51.93 -0.29 1.79 16 44 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -30.03 372.19 -6.65 -36.68 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.68 Total: 3.49 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.88 Total: -1.22 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.32 Total: -53.90 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.10 Total: 19.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.03 -6.65 -36.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087660708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.415 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds