Wall clock time and date at job start Tue Mar 31 2020 14:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.46928 * 2 1 4 4 C 1.40368 * 126.64218 * 265.29707 * 3 2 1 5 5 C 1.35130 * 107.11095 * 180.16020 * 4 3 2 6 6 O 1.33936 * 108.76939 * 359.58167 * 5 4 3 7 7 C 1.34917 * 109.38077 * 0.26810 * 6 5 4 8 8 C 1.46659 * 125.98260 * 179.97438 * 7 6 5 9 9 O 1.21695 * 119.99796 * 180.02562 * 8 7 6 10 10 N 1.34772 * 120.00059 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99761 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47182 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47150 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.46842 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99758 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46950 * 179.97438 * 15 14 13 17 17 O 1.21298 * 120.00297 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99847 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99723 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00655 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99803 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00183 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00175 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47390 * 59.99788 * 23 21 19 25 25 H 1.48497 * 109.47578 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46994 * 300.00376 * 23 21 19 27 27 H 1.09004 * 109.46828 * 60.00345 * 1 2 3 28 28 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 300.00410 * 1 2 3 30 30 H 1.09000 * 109.47161 * 239.99590 * 2 1 3 31 31 H 1.09004 * 109.46828 * 119.99655 * 2 1 3 32 32 H 1.07993 * 126.44574 * 0.02562 * 4 3 2 33 33 H 1.08002 * 125.61768 * 179.85474 * 5 4 3 34 34 H 0.96995 * 120.00718 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47482 * 300.00102 * 11 10 8 36 36 H 1.08998 * 109.47361 * 60.00385 * 11 10 8 37 37 H 1.08996 * 109.47165 * 300.00505 * 12 11 10 38 38 H 1.09000 * 109.46988 * 60.00202 * 12 11 10 39 39 H 1.08991 * 109.47279 * 300.00087 * 13 12 11 40 40 H 1.09000 * 109.46887 * 60.00291 * 13 12 11 41 41 H 1.00897 * 110.99923 * 56.05021 * 14 13 12 42 42 H 1.08998 * 109.46694 * 299.99756 * 15 14 13 43 43 H 1.09001 * 109.47216 * 60.00163 * 15 14 13 44 44 H 0.96996 * 119.99731 * 0.02562 * 18 16 15 45 45 H 0.96997 * 120.00195 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3986 2.1799 -1.1225 5 6 2.7916 3.3918 -0.6720 6 8 2.6755 3.4139 0.6622 7 6 2.2139 2.2210 1.0913 8 6 1.9534 1.8489 2.4858 9 8 1.5361 0.7370 2.7510 10 7 2.1761 2.7384 3.4735 11 6 1.9153 2.3668 4.8664 12 6 2.2487 3.5478 5.7803 13 6 1.9757 3.1600 7.2349 14 7 2.2952 4.2941 8.1122 15 6 2.0453 3.9572 9.5201 16 6 2.3842 5.1418 10.3878 17 8 2.7932 6.1662 9.8831 18 7 2.2319 5.0635 11.7247 19 6 2.5407 6.1410 12.5141 20 1 2.9056 7.0527 12.0648 21 6 2.3841 6.0600 13.8924 22 7 1.9405 4.9505 14.4392 23 14 2.8042 7.5283 14.9680 24 1 1.9589 8.6854 14.5783 25 1 2.5522 7.1877 16.3912 26 1 4.2361 7.8791 14.7895 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.3734 1.8556 -2.1523 33 1 3.1377 4.2095 -1.2868 34 1 2.5091 3.6246 3.2622 35 1 0.8640 2.1034 4.9815 36 1 2.5357 1.5124 5.1368 37 1 3.3001 3.8109 5.6651 38 1 1.6286 4.4026 5.5101 39 1 0.9242 2.8973 7.3497 40 1 2.5955 2.3051 7.5054 41 1 1.7800 5.1179 7.8403 42 1 0.9944 3.6994 9.6509 43 1 2.6661 3.1083 9.8063 44 1 1.9044 4.2445 12.1283 45 1 1.8316 4.8938 15.4014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165967096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:39 Heat of formation + Delta-G solvation = -71.688598 kcal Electronic energy + Delta-G solvation = -25459.769778 eV Core-core repulsion = 21478.433534 eV Total energy + Delta-G solvation = -3981.336244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -43.12486 -39.76665 -38.31776 -36.67484 -35.52470 -34.72497 -33.84250 -31.93388 -31.53020 -31.15416 -29.74589 -27.18052 -25.20840 -24.27941 -23.41783 -22.69276 -21.76339 -21.38940 -20.09123 -19.22559 -18.43652 -17.86892 -16.83276 -16.52883 -16.43563 -16.12966 -15.81894 -15.26676 -14.92931 -14.58860 -14.50803 -14.28281 -14.15000 -14.00827 -13.54906 -13.48364 -13.36190 -13.02282 -12.90497 -12.72129 -12.08758 -11.87645 -11.82388 -11.67481 -11.48103 -11.44208 -11.29808 -11.07382 -10.94487 -10.44419 -10.43410 -10.21125 -10.15209 -9.51135 -9.49940 -8.97524 -8.47407 -8.07761 -7.95916 -6.41384 -3.82383 0.66805 1.92601 2.29438 2.82805 2.86871 3.20418 3.26137 3.30539 3.90924 4.07922 4.24362 4.29499 4.31084 4.45605 4.79278 4.91035 4.93364 5.01294 5.02917 5.10833 5.16735 5.22132 5.25954 5.32954 5.40195 5.46185 5.53427 5.60766 5.66512 5.78485 5.84567 5.90395 5.94218 5.97744 5.99000 6.02596 6.11192 6.26890 6.43327 7.11794 7.18681 7.55201 7.63833 7.74787 8.06244 8.61481 9.17884 9.54421 10.05904 10.76237 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037224 B = 0.001500 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.019044 B =18658.788115 C =19287.685701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.082 4.082 4 C -0.224 4.224 5 C -0.003 4.003 6 O -0.164 6.164 7 C -0.085 4.085 8 C 0.602 3.398 9 O -0.516 6.516 10 N -0.719 5.719 11 C 0.121 3.879 12 C -0.130 4.130 13 C 0.063 3.937 14 N -0.670 5.670 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.932 3.068 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.211 0.789 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -8.955 -30.052 31.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.085 4.085 4 C -0.243 4.243 5 C -0.073 4.073 6 O -0.059 6.059 7 C -0.137 4.137 8 C 0.388 3.612 9 O -0.394 6.394 10 N -0.370 5.370 11 C -0.003 4.003 12 C -0.168 4.168 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.200 5.200 19 C -0.431 4.431 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.759 3.241 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.173 0.827 33 H 0.227 0.773 34 H 0.241 0.759 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.061 -9.019 -29.689 31.047 hybrid contribution -0.759 0.653 0.526 1.131 sum -1.820 -8.366 -29.163 30.394 Atomic orbital electron populations 1.21638 0.94276 1.01930 1.01865 1.20154 0.96416 0.90080 1.03473 1.20660 0.99122 0.97685 0.91038 1.21759 1.07752 0.94555 1.00253 1.24384 1.02119 1.00086 0.80706 1.84068 1.65097 1.33581 1.23161 1.21876 1.11390 0.85474 0.94973 1.16511 0.78173 0.84728 0.81788 1.90870 1.45997 1.20383 1.82139 1.45918 1.67062 1.17045 1.06939 1.21409 1.01829 0.98193 0.78867 1.21752 1.03582 0.97312 0.94185 1.21820 0.98792 0.94780 0.91338 1.60041 1.63190 1.05776 1.01225 1.21671 0.99452 0.98387 0.88687 1.19813 0.85089 0.89400 0.83146 1.90519 1.50835 1.32009 1.73492 1.41856 1.57829 1.15668 1.04619 1.19662 1.41091 0.94298 0.88010 0.87964 1.25264 0.97202 0.98184 0.97255 1.69603 1.46016 1.26247 1.12424 0.85907 0.79164 0.80806 0.78268 1.19929 1.20975 1.19885 0.93089 0.92160 0.92271 0.91050 0.89188 0.82666 0.77282 0.75869 0.91022 0.90788 0.89998 0.91153 0.95184 0.90705 0.83168 0.93796 0.89526 0.77432 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.06 -0.53 5.72 -27.88 -0.16 -0.69 16 3 C -0.08 -0.74 5.45 -104.43 -0.57 -1.31 16 4 C -0.22 -1.49 10.83 -39.89 -0.43 -1.92 16 5 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 6 O -0.16 -1.37 10.40 4.97 0.05 -1.32 16 7 C -0.09 -0.84 7.13 -36.80 -0.26 -1.11 16 8 C 0.60 6.61 7.79 -12.86 -0.10 6.51 16 9 O -0.52 -6.86 14.64 5.19 0.08 -6.79 16 10 N -0.72 -6.55 5.55 -61.62 -0.34 -6.89 16 11 C 0.12 1.10 5.67 -4.04 -0.02 1.08 16 12 C -0.13 -1.22 5.59 -26.73 -0.15 -1.37 16 13 C 0.06 0.73 5.69 -3.82 -0.02 0.70 16 14 N -0.67 -10.59 6.13 -115.06 -0.70 -11.29 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.44 7.82 -10.98 -0.09 10.35 16 17 O -0.58 -15.93 15.78 5.54 0.09 -15.84 16 18 N -0.56 -14.35 5.29 -10.96 -0.06 -14.40 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 23 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.89 6.72 -51.93 -0.35 0.55 16 32 H 0.16 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.21 0.34 8.06 -52.49 -0.42 -0.08 16 34 H 0.41 3.04 8.23 -40.82 -0.34 2.70 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 387.06 15.07 5.83 5.83 Total: -1.00 -33.68 387.06 -7.46 -41.14 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.76 Total: 12.71 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.35 Total: 4.63 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.38 Total: -56.43 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.22 Total: -23.95 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.68 -7.46 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165967096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.546 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds