Wall clock time and date at job start Tue Mar 31 2020 14:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.46928 * 2 1 4 4 C 1.40368 * 126.64218 * 265.29707 * 3 2 1 5 5 C 1.35130 * 107.11095 * 180.16020 * 4 3 2 6 6 O 1.33936 * 108.76939 * 359.58167 * 5 4 3 7 7 C 1.34917 * 109.38077 * 0.26810 * 6 5 4 8 8 C 1.46659 * 125.98260 * 179.97438 * 7 6 5 9 9 O 1.21695 * 119.99796 * 180.02562 * 8 7 6 10 10 N 1.34772 * 120.00059 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99761 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47182 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47150 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.46842 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99758 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46950 * 179.97438 * 15 14 13 17 17 O 1.21298 * 120.00297 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99847 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99723 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00655 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99803 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00183 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00175 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47390 * 59.99788 * 23 21 19 25 25 H 1.48497 * 109.47578 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46994 * 300.00376 * 23 21 19 27 27 H 1.09004 * 109.46828 * 60.00345 * 1 2 3 28 28 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 300.00410 * 1 2 3 30 30 H 1.09000 * 109.47161 * 239.99590 * 2 1 3 31 31 H 1.09004 * 109.46828 * 119.99655 * 2 1 3 32 32 H 1.07993 * 126.44574 * 0.02562 * 4 3 2 33 33 H 1.08002 * 125.61768 * 179.85474 * 5 4 3 34 34 H 0.96995 * 120.00718 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47482 * 300.00102 * 11 10 8 36 36 H 1.08998 * 109.47361 * 60.00385 * 11 10 8 37 37 H 1.08996 * 109.47165 * 300.00505 * 12 11 10 38 38 H 1.09000 * 109.46988 * 60.00202 * 12 11 10 39 39 H 1.08991 * 109.47279 * 300.00087 * 13 12 11 40 40 H 1.09000 * 109.46887 * 60.00291 * 13 12 11 41 41 H 1.00897 * 110.99923 * 56.05021 * 14 13 12 42 42 H 1.08998 * 109.46694 * 299.99756 * 15 14 13 43 43 H 1.09001 * 109.47216 * 60.00163 * 15 14 13 44 44 H 0.96996 * 119.99731 * 0.02562 * 18 16 15 45 45 H 0.96997 * 120.00195 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3986 2.1799 -1.1225 5 6 2.7916 3.3918 -0.6720 6 8 2.6755 3.4139 0.6622 7 6 2.2139 2.2210 1.0913 8 6 1.9534 1.8489 2.4858 9 8 1.5361 0.7370 2.7510 10 7 2.1761 2.7384 3.4735 11 6 1.9153 2.3668 4.8664 12 6 2.2487 3.5478 5.7803 13 6 1.9757 3.1600 7.2349 14 7 2.2952 4.2941 8.1122 15 6 2.0453 3.9572 9.5201 16 6 2.3842 5.1418 10.3878 17 8 2.7932 6.1662 9.8831 18 7 2.2319 5.0635 11.7247 19 6 2.5407 6.1410 12.5141 20 1 2.9056 7.0527 12.0648 21 6 2.3841 6.0600 13.8924 22 7 1.9405 4.9505 14.4392 23 14 2.8042 7.5283 14.9680 24 1 1.9589 8.6854 14.5783 25 1 2.5522 7.1877 16.3912 26 1 4.2361 7.8791 14.7895 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.3734 1.8556 -2.1523 33 1 3.1377 4.2095 -1.2868 34 1 2.5091 3.6246 3.2622 35 1 0.8640 2.1034 4.9815 36 1 2.5357 1.5124 5.1368 37 1 3.3001 3.8109 5.6651 38 1 1.6286 4.4026 5.5101 39 1 0.9242 2.8973 7.3497 40 1 2.5955 2.3051 7.5054 41 1 1.7800 5.1179 7.8403 42 1 0.9944 3.6994 9.6509 43 1 2.6661 3.1083 9.8063 44 1 1.9044 4.2445 12.1283 45 1 1.8316 4.8938 15.4014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165967096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:38 Heat of formation + Delta-G solvation = -97.398447 kcal Electronic energy + Delta-G solvation = -25460.884641 eV Core-core repulsion = 21478.433534 eV Total energy + Delta-G solvation = -3982.451107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -43.69448 -40.57604 -40.14900 -37.71331 -36.38857 -35.91468 -35.48143 -33.30269 -32.68873 -32.20585 -30.45931 -28.54256 -26.62460 -25.32670 -24.42605 -23.41050 -22.63130 -22.02910 -21.11470 -20.72182 -19.90473 -19.10198 -17.87599 -17.48992 -17.19689 -17.07504 -16.93863 -16.57001 -16.26038 -15.97469 -15.56155 -15.39836 -15.23068 -15.03612 -14.71892 -14.59294 -14.28086 -13.98539 -13.60982 -13.55518 -13.39589 -13.30284 -13.19199 -12.85914 -12.72544 -12.45530 -12.42897 -12.29260 -12.11915 -11.99901 -11.86126 -11.50114 -11.24029 -10.70979 -10.35798 -10.29395 -10.02003 -9.57280 -9.33709 -8.46520 -5.95669 0.02090 1.40306 1.41107 1.42257 1.53312 1.68156 2.04953 2.06783 2.18723 2.30248 2.94268 3.20664 3.51723 3.70535 3.76138 3.86619 3.98546 4.11886 4.16598 4.33428 4.39227 4.43853 4.48260 4.50375 4.55594 4.58069 4.60534 4.67732 4.76267 4.82485 5.00633 5.05116 5.10706 5.16552 5.26688 5.31070 5.32243 5.40647 5.45094 5.85891 5.88168 6.09505 6.38991 6.42366 6.59879 6.98699 7.12163 7.55872 8.11028 8.70546 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.037224 B = 0.001500 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.019044 B =18658.788115 C =19287.685701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C -0.090 4.090 4 C -0.235 4.235 5 C 0.013 3.987 6 O -0.172 6.172 7 C -0.118 4.118 8 C 0.597 3.403 9 O -0.549 6.549 10 N -0.712 5.712 11 C 0.127 3.873 12 C -0.117 4.117 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.064 3.936 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.272 1.272 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.180 0.820 33 H 0.253 0.747 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.345 0.655 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -8.800 -31.514 32.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 C -0.093 4.093 4 C -0.253 4.253 5 C -0.057 4.057 6 O -0.068 6.068 7 C -0.169 4.169 8 C 0.385 3.615 9 O -0.430 6.430 10 N -0.363 5.363 11 C 0.004 3.996 12 C -0.155 4.155 13 C -0.066 4.066 14 N -0.317 5.317 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.467 4.467 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.197 1.197 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.198 0.802 33 H 0.269 0.731 34 H 0.251 0.749 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.008 -8.878 -31.154 32.410 hybrid contribution -0.759 0.605 0.853 1.293 sum -1.767 -8.273 -30.301 31.460 Atomic orbital electron populations 1.21592 0.94080 1.02339 1.01216 1.20159 0.96581 0.90106 1.03343 1.20974 0.98516 0.97902 0.91863 1.22087 1.07917 0.94570 1.00771 1.25311 0.99632 1.00917 0.79806 1.84060 1.65204 1.32933 1.24588 1.21700 1.13950 0.86615 0.94659 1.16734 0.77726 0.84460 0.82616 1.90840 1.47673 1.21642 1.82832 1.45856 1.66537 1.17202 1.06667 1.21298 1.01616 0.97855 0.78863 1.21594 1.03447 0.97482 0.92948 1.21895 0.99741 0.93432 0.91486 1.60041 1.63792 1.07116 1.00763 1.21537 1.01066 0.95587 0.88613 1.20902 0.83157 0.90566 0.82992 1.90486 1.52208 1.34208 1.74151 1.41932 1.58401 1.15310 1.05345 1.19655 1.43165 0.94690 0.89169 0.90259 1.26052 0.96450 1.00892 0.97834 1.69665 1.45867 1.27513 1.13012 0.84972 0.78785 0.77537 0.76933 1.19644 1.19478 1.19750 0.91895 0.91264 0.94603 0.89011 0.91388 0.80219 0.73077 0.74923 0.91196 0.91192 0.90367 0.90526 0.93835 0.90102 0.83618 0.91452 0.87782 0.76947 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.06 -1.07 5.72 29.85 0.17 -0.90 16 3 C -0.09 -1.55 5.45 -19.74 -0.11 -1.66 16 4 C -0.23 -2.58 10.83 22.07 0.24 -2.34 16 5 C 0.01 0.11 12.08 67.10 0.81 0.92 16 6 O -0.17 -2.67 10.40 -5.12 -0.05 -2.72 16 7 C -0.12 -2.32 7.13 24.07 0.17 -2.15 16 8 C 0.60 13.48 7.79 86.44 0.67 14.15 16 9 O -0.55 -15.30 14.64 -4.33 -0.06 -15.36 16 10 N -0.71 -12.91 5.55 -467.10 -2.59 -15.50 16 11 C 0.13 2.26 5.67 86.38 0.49 2.75 16 12 C -0.12 -2.06 5.59 30.60 0.17 -1.89 16 13 C 0.06 1.37 5.69 86.30 0.49 1.86 16 14 N -0.68 -20.88 6.13 -517.93 -3.17 -24.06 16 15 C 0.06 2.18 6.17 85.56 0.53 2.71 16 16 C 0.44 20.83 7.82 87.66 0.69 21.51 16 17 O -0.62 -34.67 15.78 -3.08 -0.05 -34.72 16 18 N -0.57 -29.55 5.29 -306.98 -1.62 -31.17 16 19 C -0.34 -19.27 9.68 84.04 0.81 -18.45 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 23 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.03 0.72 7.92 -2.39 -0.02 0.70 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.43 6.72 -2.39 -0.02 1.41 16 32 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 33 H 0.25 -0.25 8.06 -2.91 -0.02 -0.27 16 34 H 0.41 6.03 8.23 -92.71 -0.76 5.26 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.35 10.94 8.43 -89.70 -0.76 10.18 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 45 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -74.35 387.06 -0.15 -74.50 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -1.22 Total: 38.60 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.31 Total: 14.91 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -7.11 Total: -120.19 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.17 Total: -52.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.35 -0.15 -74.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165967096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.901 kcal (2) G-P(sol) polarization free energy of solvation -74.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds