Wall clock time and date at job start Tue Mar 31 2020 13:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38313 * 120.84025 * 2 1 4 4 Cl 1.73599 * 120.41705 * 0.25527 * 3 2 1 5 5 N 1.32664 * 119.16594 * 180.25026 * 3 2 1 6 6 C 1.31784 * 120.98573 * 0.04874 * 5 3 2 7 7 C 1.50699 * 119.07824 * 179.97438 * 6 5 3 8 8 C 1.53007 * 109.47061 * 299.97964 * 7 6 5 9 9 C 1.52997 * 109.47088 * 59.97548 * 7 6 5 10 10 N 1.31747 * 121.84725 * 359.95588 * 6 5 3 11 11 C 1.33030 * 120.72222 * 0.02562 * 10 6 5 12 12 N 1.38558 * 120.52161 * 180.02562 * 11 10 6 13 13 C 1.46855 * 110.99863 * 59.22605 * 12 11 10 14 14 C 1.53040 * 109.52219 * 174.15815 * 13 12 11 15 15 C 1.53118 * 109.27709 * 59.18095 * 14 13 12 16 16 C 1.53122 * 109.15918 * 302.34054 * 15 14 13 17 17 H 1.08994 * 109.50540 * 297.71732 * 16 15 14 18 18 C 1.50697 * 109.53432 * 177.61660 * 16 15 14 19 19 H 1.07997 * 120.00078 * 245.53189 * 18 16 15 20 20 C 1.37880 * 119.99955 * 65.53113 * 18 16 15 21 21 N 1.31513 * 120.00078 * 5.14824 * 20 18 16 22 22 Si 1.86799 * 119.99787 * 185.14513 * 20 18 16 23 23 H 1.48500 * 109.47245 * 85.00222 * 22 20 18 24 24 H 1.48502 * 109.46831 * 205.00172 * 22 20 18 25 25 H 1.48495 * 109.47398 * 324.99775 * 22 20 18 26 26 C 1.46843 * 111.00346 * 295.01376 * 12 11 10 27 27 H 1.08994 * 109.47233 * 269.71925 * 1 2 3 28 28 H 1.09009 * 109.46716 * 29.71797 * 1 2 3 29 29 H 1.08997 * 109.47415 * 149.71456 * 1 2 3 30 30 H 1.09004 * 109.47474 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.46930 * 60.00086 * 8 7 6 32 32 H 1.09001 * 109.46892 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.46926 * 299.99805 * 8 7 6 34 34 H 1.09005 * 109.47094 * 60.00072 * 9 7 6 35 35 H 1.09001 * 109.47350 * 179.97438 * 9 7 6 36 36 H 1.08997 * 109.47645 * 300.00369 * 9 7 6 37 37 H 1.08998 * 109.45953 * 294.17620 * 13 12 11 38 38 H 1.09003 * 109.46079 * 54.14351 * 13 12 11 39 39 H 1.08998 * 109.50244 * 299.23315 * 14 13 12 40 40 H 1.09006 * 109.49980 * 179.11603 * 14 13 12 41 41 H 1.09002 * 109.51973 * 182.44296 * 15 14 13 42 42 H 1.08995 * 109.57584 * 62.27671 * 15 14 13 43 43 H 0.96991 * 120.00176 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.46193 * 305.85446 * 26 12 11 45 45 H 1.08994 * 109.45891 * 65.83485 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1876 0.0000 4 17 1.3813 2.7096 0.0067 5 7 3.5421 1.1488 -0.0051 6 6 4.1873 -0.0003 -0.0110 7 6 5.6943 0.0058 -0.0172 8 6 6.1962 0.7323 -1.2668 9 6 6.2064 0.7261 1.2317 10 7 3.5518 -1.1544 -0.0113 11 6 2.2222 -1.1980 -0.0061 12 7 1.5581 -2.4141 -0.0060 13 6 1.9262 -3.2146 1.1689 14 6 1.0692 -4.4818 1.2133 15 6 1.2937 -5.2890 -0.0683 16 6 0.9491 -4.4166 -1.2786 17 1 -0.1047 -4.1409 -1.2403 18 6 1.2229 -5.1833 -2.5467 19 1 1.9998 -4.8532 -3.2203 20 6 0.4814 -6.3063 -2.8470 21 7 -0.5301 -6.6508 -2.0804 22 14 0.9136 -7.3384 -4.3428 23 1 1.9767 -8.3107 -3.9829 24 1 -0.2927 -8.0718 -4.8034 25 1 1.4002 -6.4532 -5.4312 26 6 1.8095 -3.1513 -1.2508 27 1 -0.3633 -0.0050 1.0276 28 1 -0.3633 0.8926 -0.5095 29 1 -0.3634 -0.8874 -0.5182 30 1 6.0618 -1.0204 -0.0212 31 1 5.8287 1.7585 -1.2626 32 1 7.2862 0.7371 -1.2710 33 1 5.8313 0.2192 -2.1565 34 1 5.8488 0.2086 2.1219 35 1 7.2964 0.7301 1.2275 36 1 5.8389 1.7522 1.2358 37 1 2.9789 -3.4900 1.1053 38 1 1.7578 -2.6304 2.0736 39 1 0.0172 -4.2071 1.2909 40 1 1.3535 -5.0833 2.0767 41 1 0.6527 -6.1706 -0.0605 42 1 2.3374 -5.5978 -0.1273 43 1 -1.0515 -7.4410 -2.2914 44 1 1.5565 -2.5212 -2.1035 45 1 2.8627 -3.4272 -1.3029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:17 Heat of formation + Delta-G solvation = 13.452113 kcal Electronic energy + Delta-G solvation = -25852.452404 eV Core-core repulsion = 22315.517303 eV Total energy + Delta-G solvation = -3536.935102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.60565 -39.97948 -38.13575 -36.94354 -35.71078 -34.40757 -33.99151 -32.42055 -31.80557 -28.25498 -28.08256 -26.98117 -26.25190 -24.41408 -23.88738 -23.25180 -21.45568 -20.59253 -19.30206 -18.80262 -17.90461 -16.88492 -16.63137 -16.27098 -15.65987 -15.64234 -15.59891 -15.32394 -15.06617 -14.46972 -14.43157 -14.41220 -14.26280 -13.65906 -13.52382 -13.38091 -13.20339 -12.97938 -12.87948 -12.84237 -12.74434 -12.62274 -12.48134 -12.14298 -11.98037 -11.91234 -11.82748 -11.81624 -11.50190 -11.32418 -11.10130 -10.77153 -10.53556 -10.42397 -10.13499 -9.73910 -8.12243 -6.22499 -0.36548 -0.35941 0.41583 1.41391 1.42577 1.51319 2.32653 2.38511 2.48770 2.75904 3.17523 3.18422 3.53139 3.76438 3.97198 4.01610 4.09643 4.14040 4.16958 4.29561 4.38047 4.51380 4.55999 4.73446 4.75325 4.79329 4.81588 4.83830 4.85623 4.91490 4.94149 4.98995 5.05911 5.09819 5.28763 5.29298 5.31131 5.36881 5.43143 5.62199 5.64479 5.72176 5.99315 6.03554 6.13599 6.36776 6.82696 6.87687 7.44593 8.95539 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003654 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.997954 B = 7661.558329 C = 8269.699625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.154 4.154 3 C 0.213 3.787 4 Cl 0.009 6.991 5 N -0.515 5.515 6 C 0.336 3.664 7 C -0.027 4.027 8 C -0.134 4.134 9 C -0.131 4.131 10 N -0.555 5.555 11 C 0.349 3.651 12 N -0.485 5.485 13 C 0.076 3.924 14 C -0.106 4.106 15 C -0.100 4.100 16 C 0.058 3.942 17 H 0.012 0.988 18 C -0.538 4.538 19 H 0.046 0.954 20 C 0.023 3.977 21 N -0.911 5.911 22 Si 0.948 3.052 23 H -0.275 1.275 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.095 3.905 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.262 0.738 44 H 0.049 0.951 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.099 16.467 7.822 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.161 4.161 3 C 0.040 3.960 4 Cl 0.037 6.963 5 N -0.231 5.231 6 C 0.067 3.933 7 C -0.048 4.048 8 C -0.192 4.192 9 C -0.189 4.189 10 N -0.272 5.272 11 C 0.112 3.888 12 N -0.208 5.208 13 C -0.051 4.051 14 C -0.143 4.143 15 C -0.138 4.138 16 C 0.039 3.961 17 H 0.031 0.969 18 C -0.576 4.576 19 H 0.065 0.935 20 C -0.177 4.177 21 N -0.550 5.550 22 Si 0.774 3.226 23 H -0.201 1.201 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.031 4.031 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.345 16.547 7.864 20.132 hybrid contribution -0.270 -0.945 -1.046 1.435 sum 8.075 15.603 6.818 18.845 Atomic orbital electron populations 1.20652 0.86492 1.04058 1.04149 1.21324 1.00924 0.90510 1.03379 1.21981 0.89721 0.88476 0.95781 1.98408 1.74523 1.27453 1.95885 1.67601 1.07935 1.31376 1.16227 1.23488 0.98556 0.81447 0.89803 1.20164 0.83179 1.02534 0.98902 1.21762 1.02599 1.00260 0.94589 1.21742 1.02478 1.00260 0.94442 1.68523 1.11029 1.31774 1.15911 1.20327 0.86417 0.92471 0.89544 1.60110 1.53378 1.02142 1.05175 1.22035 0.97950 0.94270 0.90803 1.21576 0.99809 0.94767 0.98191 1.21435 0.98601 0.99306 0.94461 1.18565 0.94170 0.89755 0.93562 0.96941 1.21375 1.18363 1.11298 1.06602 0.93536 1.25599 0.94450 0.98520 0.99136 1.70041 1.18856 1.26162 1.39955 0.85721 0.77746 0.79018 0.80084 1.20054 1.20766 1.19668 1.22000 0.98060 0.95152 0.87873 0.88932 0.89662 0.90653 0.88653 0.91794 0.88990 0.94123 0.93500 0.89098 0.91849 0.94352 0.89997 0.91913 0.90190 0.93068 0.95316 0.92896 0.93282 0.95634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 9.46 71.24 0.67 -1.71 16 2 C -0.15 -4.53 5.94 -19.53 -0.12 -4.64 16 3 C 0.21 5.84 7.32 84.59 0.62 6.46 16 4 Cl 0.01 0.19 27.63 -2.72 -0.08 0.11 16 5 N -0.52 -14.51 9.80 -179.02 -1.75 -16.27 16 6 C 0.34 9.70 6.34 138.77 0.88 10.58 16 7 C -0.03 -0.60 3.25 -11.54 -0.04 -0.64 16 8 C -0.13 -2.55 9.09 71.98 0.65 -1.90 16 9 C -0.13 -2.29 9.09 71.98 0.65 -1.64 16 10 N -0.55 -18.57 9.78 -185.49 -1.81 -20.39 16 11 C 0.35 11.80 5.29 133.12 0.70 12.51 16 12 N -0.48 -17.67 3.72 -701.47 -2.61 -20.28 16 13 C 0.08 2.55 5.24 86.33 0.45 3.00 16 14 C -0.11 -3.79 6.09 30.65 0.19 -3.61 16 15 C -0.10 -4.56 5.09 30.67 0.16 -4.40 16 16 C 0.06 2.90 2.13 -11.49 -0.02 2.87 16 17 H 0.01 0.69 8.12 -2.39 -0.02 0.67 16 18 C -0.54 -29.51 8.49 25.60 0.22 -29.29 16 19 H 0.05 2.55 7.75 -2.91 -0.02 2.53 16 20 C 0.02 1.24 5.28 84.66 0.45 1.69 16 21 N -0.91 -51.82 11.98 21.45 0.26 -51.56 16 22 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 C 0.10 4.11 4.53 86.33 0.39 4.50 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.08 1.80 7.02 -2.38 -0.02 1.78 16 29 H 0.07 2.19 7.57 -2.39 -0.02 2.17 16 30 H 0.10 2.14 8.10 -2.39 -0.02 2.12 16 31 H 0.06 1.25 8.01 -2.39 -0.02 1.23 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.16 8.01 -2.39 -0.02 1.14 16 37 H 0.04 1.35 8.01 -2.39 -0.02 1.33 16 38 H 0.08 2.40 8.10 -2.39 -0.02 2.38 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.05 2.62 6.80 -2.39 -0.02 2.61 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.05 2.18 8.10 -2.39 -0.02 2.16 16 45 H 0.03 1.15 8.09 -2.39 -0.02 1.13 16 Total: -1.00 -60.33 373.53 2.86 -57.47 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.97 Total: 11.80 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 5.86 Total: -6.22 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -5.92 Total: -108.50 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.08 Total: 0.11 kcal Total: -60.33 2.86 -57.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.921 kcal (2) G-P(sol) polarization free energy of solvation -60.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds