Wall clock time and date at job start Tue Mar 31 2020 16:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46912 * 2 1 4 4 C 1.53000 * 109.46912 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47045 * 179.97438 * 4 3 2 6 6 C 1.32776 * 120.00211 * 89.99905 * 5 4 3 7 7 H 1.08005 * 119.99829 * 314.81616 * 6 5 4 8 8 C 1.46801 * 120.00280 * 134.53506 * 6 5 4 9 9 N 1.29324 * 119.99929 * 165.66639 * 8 6 5 10 10 Si 1.86802 * 119.99959 * 345.66959 * 8 6 5 11 11 H 1.48495 * 109.47335 * 95.52537 * 10 8 6 12 12 H 1.48496 * 109.47052 * 215.52587 * 10 8 6 13 13 H 1.48506 * 109.46900 * 335.52392 * 10 8 6 14 14 C 1.38994 * 120.00322 * 269.99985 * 5 4 3 15 15 C 1.39041 * 119.67118 * 167.17035 * 14 5 4 16 16 C 1.38554 * 119.21276 * 179.73062 * 15 14 5 17 17 C 1.38554 * 118.56045 * 0.53171 * 16 15 14 18 18 N 1.48016 * 120.36527 * 179.70801 * 17 16 15 19 19 O 1.31694 * 120.00277 * 0.02562 * 18 17 16 20 20 O 1.31703 * 119.99472 * 180.02562 * 18 17 16 21 21 C 1.38945 * 119.26535 * 359.73160 * 17 16 15 22 22 O 1.35667 * 119.63338 * 179.97438 * 21 17 16 23 23 C 1.42894 * 117.00122 * 180.02562 * 22 21 17 24 24 C 1.53004 * 109.47143 * 89.99969 * 23 22 21 25 25 C 1.53000 * 109.47371 * 209.99714 * 23 22 21 26 26 N 1.32207 * 120.73310 * 359.97438 * 21 17 16 27 27 H 1.08996 * 109.46717 * 59.99997 * 1 2 3 28 28 H 1.08996 * 109.46950 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46941 * 300.00086 * 1 2 3 30 30 H 1.08996 * 109.47434 * 239.99784 * 2 1 3 31 31 H 1.09001 * 109.47223 * 119.99485 * 2 1 3 32 32 H 1.08994 * 109.47388 * 60.00187 * 3 2 1 33 33 H 1.08996 * 109.47432 * 299.99565 * 3 2 1 34 34 H 1.08996 * 109.47434 * 59.99784 * 4 3 2 35 35 H 1.09001 * 109.47223 * 299.99485 * 4 3 2 36 36 H 0.96994 * 120.00143 * 0.02562 * 9 8 6 37 37 H 1.07996 * 120.38951 * 359.97438 * 15 14 5 38 38 H 1.08004 * 120.72056 * 180.25931 * 16 15 14 39 39 H 1.09003 * 109.47588 * 330.00223 * 23 22 21 40 40 H 1.08996 * 109.47095 * 60.00192 * 24 23 22 41 41 H 1.08997 * 109.47108 * 179.97438 * 24 23 22 42 42 H 1.09006 * 109.47009 * 300.00175 * 24 23 22 43 43 H 1.09004 * 109.46828 * 60.00746 * 25 23 22 44 44 H 1.09002 * 109.47055 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.47376 * 300.00119 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2800 3.4501 1.1483 7 1 3.5545 3.3878 1.9459 8 6 5.5142 4.2221 1.3374 9 7 5.6140 5.0499 2.3260 10 14 6.9405 4.0090 0.1501 11 1 6.8757 5.0614 -0.8956 12 1 8.2225 4.1251 0.8904 13 1 6.8571 2.6708 -0.4885 14 6 4.2894 3.4787 -1.2052 15 6 4.4913 4.8544 -1.2128 16 6 4.7265 5.4967 -2.4176 17 6 4.7410 4.7415 -3.5792 18 7 4.9820 5.3877 -4.8888 19 8 5.1847 6.6873 -4.9546 20 8 4.9937 4.6629 -5.9884 21 6 4.5263 3.3710 -3.5010 22 8 4.5384 2.6244 -4.6337 23 6 4.3108 1.2212 -4.4883 24 6 2.8116 0.9342 -4.5924 25 6 5.0524 0.4670 -5.5938 26 7 4.3104 2.7864 -2.3350 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9337 0.9287 0.8892 36 1 4.8736 5.1603 2.9428 37 1 4.4689 5.4149 -0.2899 38 1 4.8905 6.5637 -2.4512 39 1 4.6769 0.8925 -3.5156 40 1 2.4455 1.2627 -5.5651 41 1 2.6380 -0.1362 -4.4820 42 1 2.2832 1.4715 -3.8048 43 1 6.1205 0.6714 -5.5195 44 1 4.8791 -0.6034 -5.4825 45 1 4.6863 0.7955 -6.5664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:02 Heat of formation + Delta-G solvation = 1.001142 kcal Electronic energy + Delta-G solvation = -29085.751222 eV Core-core repulsion = 25107.567041 eV Total energy + Delta-G solvation = -3978.184181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.09194 -40.21800 -39.30718 -38.03843 -36.07819 -34.92764 -34.87704 -34.04938 -33.32653 -31.41617 -29.90617 -28.14695 -27.51978 -26.10863 -25.03925 -23.86935 -22.72622 -22.10913 -21.95467 -21.13871 -19.49979 -18.93104 -18.79510 -17.90533 -17.32867 -17.00214 -16.63347 -16.21934 -16.08641 -15.98315 -15.57014 -15.23096 -14.98694 -14.65463 -14.49683 -14.42282 -14.01972 -13.81728 -13.48807 -13.31412 -13.15890 -13.00707 -12.93567 -12.52631 -12.37297 -12.21606 -12.13787 -11.96905 -11.93538 -11.86051 -11.75715 -11.68932 -11.48599 -11.47270 -11.35298 -11.25891 -10.76634 -10.37474 -9.66616 -9.02927 -6.33109 -1.37581 0.31787 0.39596 0.73472 1.24504 1.31943 1.44897 1.79493 1.93571 2.12121 2.30852 2.70534 3.38224 3.70538 3.88216 3.96265 3.99395 4.02900 4.06799 4.11565 4.21399 4.31920 4.38647 4.62274 4.67858 4.73012 4.73786 4.75820 4.84995 4.87548 4.88241 4.92091 4.94852 5.07109 5.09457 5.18187 5.22904 5.25040 5.30234 5.31624 5.37955 5.45503 5.46484 5.84704 6.09753 6.26173 6.44596 6.55694 7.16919 7.77891 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.006895 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.621140 B = 4059.686061 C = 6220.307343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.117 4.117 4 C 0.086 3.914 5 N -0.326 5.326 6 C -0.384 4.384 7 H 0.115 0.885 8 C 0.037 3.963 9 N -0.786 5.786 10 Si 1.042 2.958 11 H -0.258 1.258 12 H -0.267 1.267 13 H -0.269 1.269 14 C 0.319 3.681 15 C -0.223 4.223 16 C -0.004 4.004 17 C -0.185 4.185 18 N 0.048 4.952 19 O -0.339 6.339 20 O -0.285 6.285 21 C 0.444 3.556 22 O -0.287 6.287 23 C 0.063 3.937 24 C -0.157 4.157 25 C -0.143 4.143 26 N -0.581 5.581 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.302 0.698 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.108 0.892 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.772 -13.586 1.570 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.155 4.155 4 C -0.035 4.035 5 N -0.004 5.004 6 C -0.519 4.519 7 H 0.132 0.868 8 C -0.188 4.188 9 N -0.408 5.408 10 Si 0.864 3.136 11 H -0.183 1.183 12 H -0.192 1.192 13 H -0.194 1.194 14 C 0.079 3.921 15 C -0.249 4.249 16 C -0.028 4.028 17 C -0.293 4.293 18 N 0.471 4.529 19 O -0.488 6.488 20 O -0.447 6.447 21 C 0.246 3.754 22 O -0.190 6.190 23 C 0.008 3.992 24 C -0.215 4.215 25 C -0.200 4.200 26 N -0.323 5.323 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.126 0.874 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.481 -14.042 1.636 14.830 hybrid contribution -1.220 1.176 0.272 1.716 sum -5.700 -12.866 1.908 14.201 Atomic orbital electron populations 1.21738 0.95211 1.02249 1.01482 1.21413 0.96345 0.94468 1.02954 1.21788 0.93547 0.98764 1.01432 1.22360 0.95641 0.81261 1.04263 1.42178 1.45917 1.10752 1.01525 1.22091 1.04897 1.32832 0.92129 0.86793 1.28975 0.99902 0.91046 0.98855 1.69946 1.36587 1.23276 1.11020 0.83960 0.75049 0.79358 0.75265 1.18258 1.19228 1.19404 1.18345 1.00817 0.87892 0.85051 1.21220 1.11573 0.93823 0.98244 1.20680 0.92887 1.00666 0.88594 1.19950 1.35874 0.91311 0.82189 1.49844 0.97403 1.01780 1.03863 1.96107 1.64371 0.92418 1.95880 1.96139 1.63570 1.62098 1.22858 1.18867 0.84623 0.85724 0.86143 1.86647 1.83060 1.23058 1.26222 1.22812 0.97863 0.76621 1.01917 1.22139 0.93700 1.03669 1.01948 1.21903 0.99868 1.00692 0.97508 1.66794 1.32255 1.37204 0.96097 0.93381 0.91289 0.93042 0.91068 0.90855 0.92490 0.93338 0.88967 0.88656 0.88403 0.83300 0.82906 0.89464 0.92354 0.88081 0.93569 0.92753 0.87359 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.11 -2.06 5.93 30.60 0.18 -1.88 16 3 C -0.12 -2.88 5.54 30.60 0.17 -2.71 16 4 C 0.09 2.42 5.47 86.38 0.47 2.90 16 5 N -0.33 -11.67 2.19 -513.14 -1.13 -12.80 16 6 C -0.38 -14.61 9.21 86.79 0.80 -13.81 16 7 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 8 C 0.04 1.51 4.13 87.30 0.36 1.87 16 9 N -0.79 -32.82 13.57 23.26 0.32 -32.50 16 10 Si 1.04 41.29 24.97 68.60 1.71 43.00 16 11 H -0.26 -10.69 5.95 99.48 0.59 -10.10 16 12 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 13 H -0.27 -10.72 7.10 99.48 0.71 -10.01 16 14 C 0.32 12.52 5.26 133.01 0.70 13.22 16 15 C -0.22 -9.12 5.89 22.54 0.13 -8.99 16 16 C 0.00 -0.15 9.22 22.42 0.21 0.05 16 17 C -0.19 -8.53 6.93 36.62 0.25 -8.28 16 18 N 0.05 2.46 4.98 -45.88 -0.23 2.23 16 19 O -0.34 -17.86 19.22 3.52 0.07 -17.80 16 20 O -0.28 -14.80 17.91 10.81 0.19 -14.61 16 21 C 0.44 18.70 7.45 84.81 0.63 19.33 16 22 O -0.29 -11.31 7.69 -68.72 -0.53 -11.84 16 23 C 0.06 1.82 3.11 30.60 0.10 1.91 16 24 C -0.16 -3.79 9.53 71.98 0.69 -3.11 16 25 C -0.14 -3.24 9.56 71.98 0.69 -2.55 16 26 N -0.58 -22.39 7.35 -306.28 -2.25 -24.65 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 2.56 7.23 -2.39 -0.02 2.55 16 35 H 0.10 2.43 8.03 -2.39 -0.02 2.41 16 36 H 0.30 11.93 8.73 -92.71 -0.81 11.12 16 37 H 0.15 6.08 5.80 -2.91 -0.02 6.06 16 38 H 0.15 6.19 7.66 -2.91 -0.02 6.17 16 39 H 0.09 2.52 6.98 -2.39 -0.02 2.50 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -55.95 373.54 5.07 -50.88 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.83 Total: 21.89 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 6.09 Total: -3.80 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -3.29 Total: -67.72 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.27 Total: -44.25 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.71 Total: 43.00 kcal Total: -55.95 5.07 -50.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.877 kcal (2) G-P(sol) polarization free energy of solvation -55.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds