Wall clock time and date at job start Tue Mar 31 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46834 * 2 1 4 4 O 1.34252 * 126.52468 * 269.97318 * 3 2 1 5 5 C 1.34056 * 108.22217 * 180.02562 * 4 3 2 6 6 N 1.29933 * 109.24602 * 0.02562 * 5 4 3 7 7 C 1.36067 * 108.47529 * 359.97438 * 6 5 4 8 8 C 1.47416 * 126.44736 * 180.02562 * 7 6 5 9 9 O 1.21610 * 120.00326 * 173.90932 * 8 7 6 10 10 N 1.34775 * 120.00045 * 353.90757 * 8 7 6 11 11 C 1.47516 * 118.76046 * 183.15870 * 10 8 7 12 12 C 1.53567 * 111.03014 * 221.60849 * 11 10 8 13 13 C 1.51542 * 109.58515 * 39.97371 * 12 11 10 14 14 O 1.42151 * 108.75370 * 268.60315 * 13 12 11 15 15 C 1.38018 * 119.43875 * 87.23166 * 14 13 12 16 16 H 1.08997 * 109.46873 * 56.56675 * 15 14 13 17 17 C 1.53001 * 109.46828 * 176.56509 * 15 14 13 18 18 N 1.46501 * 109.46958 * 299.99416 * 17 15 14 19 19 C 1.36938 * 119.99904 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00402 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99816 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00393 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99838 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47228 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47199 * 120.00153 * 23 21 19 26 26 H 1.48503 * 109.47132 * 239.99909 * 23 21 19 27 27 C 1.45123 * 118.75945 * 2.89220 * 10 8 7 28 28 H 1.09002 * 109.46726 * 60.00010 * 1 2 3 29 29 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47284 * 299.99693 * 1 2 3 31 31 H 1.09005 * 109.47013 * 240.00292 * 2 1 3 32 32 H 1.08990 * 109.47020 * 120.00251 * 2 1 3 33 33 H 1.08004 * 125.37443 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.16653 * 342.00261 * 11 10 8 35 35 H 1.08997 * 109.16619 * 101.25694 * 11 10 8 36 36 H 1.09001 * 109.45360 * 160.01030 * 12 11 10 37 37 H 1.08998 * 109.45337 * 279.94311 * 12 11 10 38 38 H 1.08997 * 109.58334 * 28.38381 * 13 12 11 39 39 H 1.08997 * 109.58869 * 148.67229 * 13 12 11 40 40 H 1.08999 * 109.47341 * 59.99629 * 17 15 14 41 41 H 1.09003 * 109.47174 * 180.02562 * 17 15 14 42 42 H 0.97001 * 120.00332 * 0.02562 * 18 17 15 43 43 H 0.97002 * 120.00329 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.46267 * 210.75785 * 27 10 8 45 45 H 1.09003 * 109.45675 * 330.71025 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7237 3.3739 -0.6579 6 7 2.7311 3.3940 0.6413 7 6 2.3027 2.1843 1.0937 8 6 2.1583 1.7775 2.5032 9 8 1.6593 0.7030 2.7780 10 7 2.5794 2.5962 3.4874 11 6 2.4866 2.1326 4.8848 12 6 1.9969 3.2582 5.8075 13 6 0.9066 4.0476 5.1114 14 8 1.5031 5.1318 4.4118 15 6 1.9594 4.9390 3.1236 16 1 1.1435 4.5732 2.5002 17 6 2.4756 6.2651 2.5616 18 7 1.3891 7.2477 2.5528 19 6 1.6166 8.5158 2.0887 20 1 2.5968 8.7915 1.7288 21 6 0.5872 9.4471 2.0809 22 7 -0.6073 9.1114 2.5201 23 14 0.8973 11.1767 1.4472 24 1 2.3126 11.2991 1.0147 25 1 0.0015 11.4496 0.2945 26 1 0.6243 12.1567 2.5290 27 6 3.1125 3.8984 3.1322 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.0145 4.1940 -1.2976 34 1 1.7891 1.2966 4.9389 35 1 3.4699 1.8002 5.2176 36 1 1.6020 2.8274 6.7276 37 1 2.8292 3.9206 6.0453 38 1 0.3817 3.4026 4.4068 39 1 0.2032 4.4298 5.8510 40 1 3.2914 6.6309 3.1850 41 1 2.8355 6.1129 1.5440 42 1 0.5086 7.0002 2.8758 43 1 -1.3267 9.7621 2.5143 44 1 3.8646 4.1947 3.8634 45 1 3.5682 3.8468 2.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200164708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:17 Heat of formation + Delta-G solvation = -24.770765 kcal Electronic energy + Delta-G solvation = -28984.275887 eV Core-core repulsion = 25004.974153 eV Total energy + Delta-G solvation = -3979.301735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.59434 -40.34145 -38.42987 -35.50053 -35.17648 -34.43623 -34.21067 -32.84912 -30.92406 -29.45714 -28.55058 -26.75769 -25.36908 -24.35031 -23.66042 -22.58220 -21.97623 -21.04326 -20.76850 -19.51939 -17.66501 -17.15572 -16.95344 -16.82703 -16.32456 -16.14316 -15.58733 -15.20764 -14.91041 -14.62964 -14.47075 -14.16718 -13.74454 -13.71496 -13.33075 -13.03515 -12.95987 -12.82412 -12.54156 -12.22811 -12.15184 -11.85884 -11.76271 -11.47720 -11.31546 -11.20442 -10.87310 -10.77622 -10.69092 -10.35878 -10.27028 -9.96209 -9.78737 -9.63757 -9.29065 -9.07615 -8.78817 -8.39522 -6.78642 -5.65724 -2.93146 0.97203 1.95146 2.42401 2.89315 3.19145 3.48487 3.53565 3.56241 3.92389 4.11081 4.37359 4.51074 4.67340 4.81031 4.87316 4.94373 4.98739 5.08618 5.19778 5.32429 5.39149 5.40464 5.51242 5.58610 5.61099 5.63317 5.66922 5.71209 5.76677 5.85972 5.89200 5.99513 6.01530 6.13820 6.23195 6.37994 6.45109 6.57676 6.80860 6.89956 7.20581 7.43852 7.77934 8.03070 8.15693 8.52850 9.64139 10.24929 10.60562 11.57405 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.004120 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.888406 B = 6794.903572 C = 8199.021547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.042 3.958 4 O -0.198 6.198 5 C 0.181 3.819 6 N -0.451 5.451 7 C -0.074 4.074 8 C 0.597 3.403 9 O -0.542 6.542 10 N -0.591 5.591 11 C 0.110 3.890 12 C -0.165 4.165 13 C 0.074 3.926 14 O -0.371 6.371 15 C 0.100 3.900 16 H 0.045 0.955 17 C 0.171 3.829 18 N -0.727 5.727 19 C -0.233 4.233 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.054 3.946 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.257 0.743 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.022 0.978 41 H 0.039 0.961 42 H 0.386 0.614 43 H 0.253 0.747 44 H 0.075 0.925 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.218 -20.357 -2.445 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.015 4.015 4 O -0.085 6.085 5 C -0.047 4.047 6 N -0.180 5.180 7 C -0.193 4.193 8 C 0.385 3.615 9 O -0.420 6.420 10 N -0.321 5.321 11 C -0.011 4.011 12 C -0.203 4.203 13 C -0.002 4.002 14 O -0.289 6.289 15 C 0.039 3.961 16 H 0.063 0.937 17 C 0.043 3.957 18 N -0.371 5.371 19 C -0.365 4.365 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.070 4.070 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.272 0.728 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.057 0.943 42 H 0.220 0.780 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.265 -20.086 -1.892 21.443 hybrid contribution -0.287 0.484 -0.744 0.933 sum 6.978 -19.602 -2.636 20.973 Atomic orbital electron populations 1.21706 0.92990 1.02758 1.02749 1.20319 0.97199 0.85472 1.04979 1.23723 0.98678 0.95617 0.83451 1.84381 1.63633 1.24255 1.36202 1.28312 0.98031 0.86673 0.91667 1.70906 1.17479 1.20095 1.09470 1.21395 1.10917 0.91685 0.95302 1.16915 0.77857 0.83752 0.82936 1.90743 1.45419 1.22696 1.83161 1.47734 1.61442 1.16987 1.05983 1.21871 1.01923 0.97690 0.79645 1.22490 1.01042 0.97977 0.98773 1.22083 0.94004 0.88938 0.95222 1.86420 1.77637 1.36802 1.28058 1.22236 0.94285 0.96185 0.83345 0.93734 1.20568 0.92113 0.86247 0.96778 1.42250 1.09305 1.08872 1.76636 1.19276 0.95782 0.87940 1.33456 0.91202 1.24718 0.95812 0.98210 1.02413 1.69690 1.01305 1.34163 1.53008 0.86147 0.77141 0.85091 0.78010 1.20599 1.22045 1.21983 1.23392 0.97633 0.81100 1.04879 0.92515 0.91178 0.91612 0.89881 0.86932 0.72770 0.89068 0.91660 0.89769 0.90099 0.93664 0.89392 0.96051 0.94327 0.78004 0.93739 0.90649 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.90 37.16 0.37 -0.99 16 2 C -0.04 -0.41 5.87 -27.88 -0.16 -0.57 16 3 C 0.04 0.51 6.69 -35.08 -0.23 0.27 16 4 O -0.20 -2.21 10.73 6.51 0.07 -2.14 16 5 C 0.18 1.93 13.19 51.96 0.69 2.62 16 6 N -0.45 -6.15 7.26 -11.48 -0.08 -6.23 16 7 C -0.07 -1.03 6.64 -83.02 -0.55 -1.59 16 8 C 0.60 8.92 7.63 -12.52 -0.10 8.83 16 9 O -0.54 -8.47 14.18 5.27 0.07 -8.40 16 10 N -0.59 -8.36 2.18 -173.40 -0.38 -8.74 16 11 C 0.11 1.32 6.17 -3.19 -0.02 1.30 16 12 C -0.16 -1.94 5.79 -27.17 -0.16 -2.10 16 13 C 0.07 1.13 6.38 36.42 0.23 1.36 16 14 O -0.37 -7.10 9.18 -26.54 -0.24 -7.34 16 15 C 0.10 1.83 2.33 -25.50 -0.06 1.77 16 16 H 0.04 0.91 8.06 -51.93 -0.42 0.49 16 17 C 0.17 3.63 5.95 -4.04 -0.02 3.60 16 18 N -0.73 -19.38 5.49 -59.91 -0.33 -19.71 16 19 C -0.23 -6.70 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 23 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 C 0.05 0.80 4.49 -3.55 -0.02 0.78 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.11 1.16 6.62 -51.93 -0.34 0.82 16 33 H 0.26 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.09 1.11 6.96 -51.93 -0.36 0.75 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 38 H 0.04 0.72 7.40 -51.93 -0.38 0.33 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.39 11.13 7.53 -40.82 -0.31 10.82 16 43 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 45 H 0.13 1.96 4.62 -54.02 -0.25 1.71 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -34.89 364.26 -6.66 -41.55 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.68 Total: 8.30 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.28 Total: 7.88 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.07 Total: -63.09 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.10 Total: -17.87 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.89 -6.66 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200164708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.780 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds