Wall clock time and date at job start Tue Mar 31 2020 14:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46834 * 2 1 4 4 O 1.34252 * 126.52468 * 269.97318 * 3 2 1 5 5 C 1.34056 * 108.22217 * 180.02562 * 4 3 2 6 6 N 1.29933 * 109.24602 * 0.02562 * 5 4 3 7 7 C 1.36067 * 108.47529 * 359.97438 * 6 5 4 8 8 C 1.47416 * 126.44736 * 180.02562 * 7 6 5 9 9 O 1.21610 * 120.00326 * 173.90932 * 8 7 6 10 10 N 1.34775 * 120.00045 * 353.90757 * 8 7 6 11 11 C 1.47516 * 118.76046 * 183.15870 * 10 8 7 12 12 C 1.53567 * 111.03014 * 221.60849 * 11 10 8 13 13 C 1.51542 * 109.58515 * 39.97371 * 12 11 10 14 14 O 1.42151 * 108.75370 * 268.60315 * 13 12 11 15 15 C 1.38018 * 119.43875 * 87.23166 * 14 13 12 16 16 H 1.08997 * 109.46873 * 56.56675 * 15 14 13 17 17 C 1.53001 * 109.46828 * 176.56509 * 15 14 13 18 18 N 1.46501 * 109.46958 * 299.99416 * 17 15 14 19 19 C 1.36938 * 119.99904 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00402 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99816 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00393 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99838 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47228 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47199 * 120.00153 * 23 21 19 26 26 H 1.48503 * 109.47132 * 239.99909 * 23 21 19 27 27 C 1.45123 * 118.75945 * 2.89220 * 10 8 7 28 28 H 1.09002 * 109.46726 * 60.00010 * 1 2 3 29 29 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47284 * 299.99693 * 1 2 3 31 31 H 1.09005 * 109.47013 * 240.00292 * 2 1 3 32 32 H 1.08990 * 109.47020 * 120.00251 * 2 1 3 33 33 H 1.08004 * 125.37443 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.16653 * 342.00261 * 11 10 8 35 35 H 1.08997 * 109.16619 * 101.25694 * 11 10 8 36 36 H 1.09001 * 109.45360 * 160.01030 * 12 11 10 37 37 H 1.08998 * 109.45337 * 279.94311 * 12 11 10 38 38 H 1.08997 * 109.58334 * 28.38381 * 13 12 11 39 39 H 1.08997 * 109.58869 * 148.67229 * 13 12 11 40 40 H 1.08999 * 109.47341 * 59.99629 * 17 15 14 41 41 H 1.09003 * 109.47174 * 180.02562 * 17 15 14 42 42 H 0.97001 * 120.00332 * 0.02562 * 18 17 15 43 43 H 0.97002 * 120.00329 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.46267 * 210.75785 * 27 10 8 45 45 H 1.09003 * 109.45675 * 330.71025 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7237 3.3739 -0.6579 6 7 2.7311 3.3940 0.6413 7 6 2.3027 2.1843 1.0937 8 6 2.1583 1.7775 2.5032 9 8 1.6593 0.7030 2.7780 10 7 2.5794 2.5962 3.4874 11 6 2.4866 2.1326 4.8848 12 6 1.9969 3.2582 5.8075 13 6 0.9066 4.0476 5.1114 14 8 1.5031 5.1318 4.4118 15 6 1.9594 4.9390 3.1236 16 1 1.1435 4.5732 2.5002 17 6 2.4756 6.2651 2.5616 18 7 1.3891 7.2477 2.5528 19 6 1.6166 8.5158 2.0887 20 1 2.5968 8.7915 1.7288 21 6 0.5872 9.4471 2.0809 22 7 -0.6073 9.1114 2.5201 23 14 0.8973 11.1767 1.4472 24 1 2.3126 11.2991 1.0147 25 1 0.0015 11.4496 0.2945 26 1 0.6243 12.1567 2.5290 27 6 3.1125 3.8984 3.1322 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.0145 4.1940 -1.2976 34 1 1.7891 1.2966 4.9389 35 1 3.4699 1.8002 5.2176 36 1 1.6020 2.8274 6.7276 37 1 2.8292 3.9206 6.0453 38 1 0.3817 3.4026 4.4068 39 1 0.2032 4.4298 5.8510 40 1 3.2914 6.6309 3.1850 41 1 2.8355 6.1129 1.5440 42 1 0.5086 7.0002 2.8758 43 1 -1.3267 9.7621 2.5143 44 1 3.8646 4.1947 3.8634 45 1 3.5682 3.8468 2.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200164708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:16 Heat of formation + Delta-G solvation = -49.478071 kcal Electronic energy + Delta-G solvation = -28985.347276 eV Core-core repulsion = 25004.974153 eV Total energy + Delta-G solvation = -3980.373124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.50289 -41.51819 -39.71797 -36.75295 -36.52035 -35.82228 -35.06527 -34.31538 -32.75036 -30.51910 -29.96367 -27.93834 -26.90548 -25.49493 -24.69559 -24.21418 -22.98833 -22.44817 -21.90133 -20.55285 -19.20316 -18.73333 -18.06905 -17.89700 -17.56753 -17.23553 -16.84560 -16.54937 -16.06881 -15.90803 -15.77732 -15.30197 -15.11139 -14.85842 -14.72731 -14.58030 -14.34574 -13.86813 -13.65999 -13.54091 -13.40907 -13.23861 -12.82358 -12.73898 -12.63793 -12.46098 -12.34602 -12.12732 -12.05304 -11.90325 -11.77667 -11.52512 -11.43828 -10.96761 -10.90804 -10.55889 -10.05417 -9.57306 -8.94649 -7.89455 -5.18347 0.01799 1.01355 1.49239 1.51183 1.54887 1.61255 1.87152 2.12634 2.59720 2.76279 3.01351 3.44646 3.50784 3.57760 3.73324 3.83722 4.04545 4.07272 4.09612 4.14225 4.22428 4.28254 4.33147 4.43176 4.45836 4.54417 4.57437 4.69462 4.75642 4.77063 4.83617 4.90967 4.96318 5.06933 5.10786 5.12628 5.23326 5.24002 5.37556 5.51742 5.52972 6.11183 6.30987 6.48012 6.77005 6.94373 7.37245 8.13442 8.38025 9.35019 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.004120 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.888406 B = 6794.903572 C = 8199.021547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C 0.047 3.953 4 O -0.195 6.195 5 C 0.193 3.807 6 N -0.484 5.484 7 C -0.104 4.104 8 C 0.591 3.409 9 O -0.555 6.555 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.152 4.152 13 C 0.070 3.930 14 O -0.401 6.401 15 C 0.115 3.885 16 H 0.017 0.983 17 C 0.171 3.829 18 N -0.741 5.741 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.080 4.080 22 N -0.974 5.974 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.294 1.294 26 H -0.296 1.296 27 C 0.070 3.930 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.294 0.706 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.094 0.906 40 H 0.022 0.978 41 H 0.053 0.947 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.086 0.914 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.798 -20.945 -3.169 22.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.011 4.011 4 O -0.081 6.081 5 C -0.035 4.035 6 N -0.212 5.212 7 C -0.222 4.222 8 C 0.380 3.620 9 O -0.435 6.435 10 N -0.324 5.324 11 C -0.013 4.013 12 C -0.190 4.190 13 C -0.006 4.006 14 O -0.320 6.320 15 C 0.055 3.945 16 H 0.035 0.965 17 C 0.044 3.956 18 N -0.383 5.383 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.271 4.271 22 N -0.625 5.625 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.221 1.221 26 H -0.224 1.224 27 C -0.054 4.054 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.056 0.944 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.309 0.691 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.112 0.888 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.895 -20.704 -2.606 22.684 hybrid contribution -0.794 0.610 -0.532 1.134 sum 8.101 -20.094 -3.138 21.892 Atomic orbital electron populations 1.21678 0.92882 1.03802 1.01435 1.20421 0.97115 0.84282 1.05987 1.24134 0.97460 0.96333 0.83145 1.84411 1.63563 1.24393 1.35764 1.29168 0.95982 0.87002 0.91344 1.70794 1.19058 1.20362 1.11001 1.21434 1.12864 0.92567 0.95377 1.17149 0.77568 0.83709 0.83597 1.90720 1.46024 1.23240 1.83557 1.47798 1.61277 1.16459 1.06840 1.22039 1.03139 0.97543 0.78600 1.22401 0.99724 0.97408 0.99464 1.22278 0.95239 0.88261 0.94870 1.86343 1.78239 1.39168 1.28257 1.21935 0.94541 0.95388 0.82652 0.96502 1.20708 0.90665 0.86536 0.97657 1.42469 1.09884 1.09459 1.76461 1.19733 0.96107 0.88796 1.32362 0.90108 1.25601 0.95631 1.02472 1.03418 1.69870 1.02289 1.35410 1.54961 0.85033 0.77860 0.79687 0.76945 1.18535 1.22078 1.22376 1.23146 0.96070 0.80531 1.05695 0.92214 0.88994 0.94425 0.87002 0.87697 0.69088 0.89305 0.89438 0.86669 0.90185 0.95019 0.88766 0.95957 0.92974 0.79823 0.94235 0.89590 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.90 71.98 0.71 -1.82 16 2 C -0.04 -0.74 5.87 29.85 0.18 -0.56 16 3 C 0.05 1.09 6.69 25.19 0.17 1.26 16 4 O -0.20 -4.04 10.73 0.37 0.00 -4.03 16 5 C 0.19 3.82 13.19 130.52 1.72 5.54 16 6 N -0.48 -12.91 7.26 -305.15 -2.22 -15.12 16 7 C -0.10 -2.91 6.64 40.41 0.27 -2.64 16 8 C 0.59 17.70 7.63 86.66 0.66 18.36 16 9 O -0.56 -17.48 14.18 -4.06 -0.06 -17.53 16 10 N -0.59 -16.54 2.18 -820.77 -1.79 -18.33 16 11 C 0.11 2.43 6.17 86.38 0.53 2.97 16 12 C -0.15 -3.36 5.79 30.31 0.18 -3.18 16 13 C 0.07 2.11 6.38 71.50 0.46 2.57 16 14 O -0.40 -15.59 9.18 -117.90 -1.08 -16.67 16 15 C 0.11 4.28 2.33 31.39 0.07 4.35 16 16 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 17 C 0.17 7.27 5.95 86.38 0.51 7.79 16 18 N -0.74 -40.13 5.49 -343.45 -1.89 -42.01 16 19 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 22 N -0.97 -62.06 13.06 21.65 0.28 -61.77 16 23 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 27 C 0.07 2.04 4.49 87.43 0.39 2.44 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.10 2.09 6.62 -2.39 -0.02 2.07 16 33 H 0.29 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.09 2.08 6.96 -2.38 -0.02 2.06 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.83 8.01 -2.39 -0.02 1.81 16 38 H 0.03 1.03 7.40 -2.39 -0.02 1.01 16 39 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.37 22.08 7.53 -92.71 -0.70 21.38 16 43 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.09 2.34 8.11 -2.39 -0.02 2.32 16 45 H 0.14 3.99 4.62 -6.52 -0.03 3.96 16 Total: -1.00 -76.50 364.26 2.73 -73.76 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.29 Total: 32.80 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 7.16 Total: 19.98 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -5.61 Total: -137.24 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.14 Total: -38.24 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -76.50 2.73 -73.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200164708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.284 kcal (2) G-P(sol) polarization free energy of solvation -76.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds