Wall clock time and date at job start Tue Mar 31 2020 16:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00036 * 2 1 4 4 C 1.52997 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47220 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47426 * 59.99850 * 5 4 3 7 7 O 1.42900 * 109.46918 * 299.99654 * 5 4 3 8 8 C 1.52997 * 109.47220 * 180.02562 * 5 4 3 9 9 N 1.46500 * 109.47278 * 184.99905 * 8 5 4 10 10 C 1.34776 * 120.00105 * 179.97438 * 9 8 5 11 11 O 1.21585 * 120.00253 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99945 * 179.97438 * 10 9 8 13 13 C 1.39466 * 120.00128 * 174.97858 * 12 10 9 14 14 C 1.38640 * 119.65148 * 185.36219 * 13 12 10 15 15 C 1.40819 * 118.67524 * 180.02562 * 14 13 12 16 16 C 1.41547 * 120.99257 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99809 * 151.73200 * 16 15 14 18 18 C 1.40028 * 120.00256 * 331.72003 * 16 15 14 19 19 N 1.30743 * 120.00039 * 350.16178 * 18 16 15 20 20 Si 1.86802 * 119.99768 * 170.15649 * 18 16 15 21 21 H 1.48499 * 109.47209 * 90.00696 * 20 18 16 22 22 H 1.48506 * 109.46778 * 210.00040 * 20 18 16 23 23 H 1.48493 * 109.47244 * 330.00252 * 20 18 16 24 24 C 1.41160 * 118.00392 * 359.97438 * 15 14 13 25 25 C 1.36585 * 119.12964 * 0.02562 * 24 15 14 26 26 N 1.32068 * 121.25771 * 359.71754 * 25 24 15 27 27 H 1.09006 * 109.47183 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47320 * 299.99919 * 1 2 3 29 29 H 1.09000 * 109.47251 * 60.00317 * 1 2 3 30 30 H 1.09001 * 109.46983 * 299.99771 * 3 2 1 31 31 H 1.09004 * 109.47148 * 59.99497 * 3 2 1 32 32 H 1.09001 * 109.46980 * 299.99844 * 4 3 2 33 33 H 1.08999 * 109.47413 * 60.00188 * 4 3 2 34 34 H 1.09001 * 109.47138 * 60.00046 * 6 5 4 35 35 H 1.09000 * 109.47410 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46727 * 300.00460 * 6 5 4 37 37 H 0.96697 * 114.00224 * 300.00194 * 7 5 4 38 38 H 1.09002 * 109.47387 * 304.99689 * 8 5 4 39 39 H 1.08998 * 109.47711 * 64.99816 * 8 5 4 40 40 H 0.96996 * 119.99821 * 359.97438 * 9 8 5 41 41 H 0.97001 * 120.00315 * 354.98632 * 12 10 9 42 42 H 1.08001 * 120.66214 * 0.02562 * 14 13 12 43 43 H 0.97003 * 119.99734 * 179.97438 * 19 18 16 44 44 H 1.08000 * 120.43066 * 179.97438 * 24 15 14 45 45 H 1.07998 * 119.37216 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 6 3.7057 3.3414 1.2505 7 8 3.7366 3.2918 -1.1655 8 6 5.6829 2.4616 0.0013 9 7 6.2783 3.7947 0.1223 10 6 7.6186 3.9346 0.1444 11 8 8.3336 2.9545 0.0634 12 7 8.1664 5.1610 0.2551 13 6 9.5483 5.2986 0.3834 14 6 10.0948 6.5526 0.6087 15 6 11.4926 6.6679 0.7344 16 6 12.1026 7.9244 0.9644 17 1 13.0419 7.9797 1.4947 18 6 11.4883 9.0956 0.5043 19 7 10.4594 9.0220 -0.2990 20 14 12.1390 10.7632 1.0383 21 1 13.1721 11.2229 0.0758 22 1 11.0229 11.7424 1.0717 23 1 12.7389 10.6501 2.3920 24 6 12.2672 5.4930 0.6243 25 6 11.6388 4.3008 0.4016 26 7 10.3245 4.2286 0.2938 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8463 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 3.8566 0.6439 0.8909 33 1 3.8574 0.6436 -0.8891 34 1 4.0269 2.8003 2.1405 35 1 4.1487 4.3373 1.2507 36 1 2.6191 3.4274 1.2500 37 1 3.9895 2.8672 -1.9967 38 1 5.9986 1.8450 0.8429 39 1 6.0109 2.0004 -0.9302 40 1 5.7080 4.5766 0.1865 41 1 7.5995 5.9481 0.2457 42 1 9.4611 7.4237 0.6861 43 1 10.0337 9.8334 -0.6175 44 1 13.3426 5.5363 0.7140 45 1 12.2276 3.3994 0.3171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365071490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:30 Heat of formation + Delta-G solvation = -89.456706 kcal Electronic energy + Delta-G solvation = -26736.443863 eV Core-core repulsion = 22754.337135 eV Total energy + Delta-G solvation = -3982.106727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.05446 -39.15594 -38.06645 -37.56182 -34.45676 -33.98777 -33.68469 -32.84691 -30.49412 -29.58143 -28.54362 -27.04665 -26.44496 -25.94843 -23.42481 -21.94438 -21.51695 -20.63069 -20.02349 -18.24081 -17.64895 -17.09892 -16.74677 -16.49812 -15.79573 -15.61386 -15.27550 -15.15367 -14.76262 -14.56829 -14.32777 -14.17740 -13.91444 -13.67370 -13.32046 -12.82561 -12.80164 -12.68328 -12.56718 -12.36706 -12.16985 -11.95835 -11.69831 -11.58067 -11.42763 -11.17633 -10.93145 -10.89390 -10.32927 -10.27311 -10.12683 -9.99176 -9.73171 -9.56075 -9.36359 -8.79711 -7.92449 -7.70214 -7.00666 -6.73471 -4.60478 2.71643 2.82027 2.93282 3.02453 3.07086 3.25470 3.41160 3.85503 3.87988 3.94632 4.34384 4.47659 4.58039 4.67237 4.74317 4.80683 4.85236 4.98148 5.07290 5.13099 5.28368 5.40988 5.48963 5.54863 5.61407 5.66647 5.70863 5.73318 5.93992 5.98344 6.55766 6.62682 6.70108 6.78238 6.81748 6.97549 7.14000 7.29896 7.33691 7.44446 7.50874 7.88793 8.13336 8.41650 8.47995 8.74435 8.78255 9.19972 9.74261 10.12807 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.002174 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.475310 B =12874.987787 C =13724.751287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.064 3.936 4 C -0.142 4.142 5 C 0.125 3.875 6 C -0.144 4.144 7 O -0.556 6.556 8 C 0.120 3.880 9 N -0.748 5.748 10 C 0.691 3.309 11 O -0.535 6.535 12 N -0.667 5.667 13 C 0.354 3.646 14 C -0.240 4.240 15 C 0.145 3.855 16 C -0.457 4.457 17 H 0.081 0.919 18 C 0.076 3.924 19 N -0.797 5.797 20 Si 0.914 3.086 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.281 4.281 25 C 0.118 3.882 26 N -0.551 5.551 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.380 0.620 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.394 0.606 41 H 0.404 0.596 42 H 0.129 0.871 43 H 0.280 0.720 44 H 0.102 0.898 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.732 -8.172 0.487 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.315 6.315 3 C -0.012 4.012 4 C -0.180 4.180 5 C 0.084 3.916 6 C -0.201 4.201 7 O -0.362 6.362 8 C -0.005 4.005 9 N -0.408 5.408 10 C 0.390 3.610 11 O -0.406 6.406 12 N -0.315 5.315 13 C 0.128 3.872 14 C -0.266 4.266 15 C 0.136 3.864 16 C -0.488 4.488 17 H 0.099 0.901 18 C -0.142 4.142 19 N -0.423 5.423 20 Si 0.738 3.262 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.305 4.305 25 C -0.036 4.036 26 N -0.270 5.270 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.228 0.772 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.229 0.771 41 H 0.239 0.761 42 H 0.147 0.853 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.791 -9.582 0.593 21.101 hybrid contribution 0.101 2.268 -0.186 2.278 sum -18.689 -7.314 0.407 20.074 Atomic orbital electron populations 1.22727 0.80958 1.02713 1.00018 1.87855 1.19774 1.28346 1.95482 1.22504 0.93393 0.84363 1.00965 1.22100 0.94263 0.96961 1.04708 1.21384 0.91896 0.90951 0.87395 1.21834 1.02074 1.01087 0.95092 1.86541 1.81080 1.52865 1.15728 1.21696 0.91144 0.84777 1.02898 1.45088 1.05255 1.08979 1.81456 1.16091 0.81654 0.84357 0.78888 1.91013 1.59455 1.36801 1.53346 1.42546 1.06244 1.07128 1.75602 1.17974 0.81924 0.90678 0.96645 1.21551 0.96283 0.94529 1.14258 1.17576 0.90582 0.92464 0.85761 1.19552 1.06787 0.89973 1.32538 0.90083 1.25930 0.93977 1.01543 0.92767 1.69754 1.18141 1.30946 1.23436 0.86226 0.79239 0.80483 0.80261 1.19433 1.20116 1.18469 1.21704 0.99178 0.94503 1.15127 1.21489 0.89681 0.96119 0.96298 1.67215 1.05320 1.30283 1.24151 0.89655 0.94086 0.94058 0.92512 0.92927 0.89657 0.90303 0.90568 0.91419 0.91523 0.77189 0.90799 0.91423 0.77095 0.76137 0.85344 0.90868 0.88001 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.69 10.70 -35.23 -0.38 -4.06 16 3 C 0.06 0.51 5.44 37.16 0.20 0.71 16 4 C -0.14 -1.11 4.82 -26.73 -0.13 -1.24 16 5 C 0.12 1.05 0.75 -90.62 -0.07 0.99 16 6 C -0.14 -1.15 8.26 37.16 0.31 -0.85 16 7 O -0.56 -4.78 12.25 -35.23 -0.43 -5.21 16 8 C 0.12 1.38 4.82 -4.04 -0.02 1.36 16 9 N -0.75 -10.23 5.19 -65.23 -0.34 -10.57 16 10 C 0.69 13.42 8.52 -86.92 -0.74 12.68 16 11 O -0.53 -12.76 14.60 5.29 0.08 -12.68 16 12 N -0.67 -13.37 5.40 -15.86 -0.09 -13.46 16 13 C 0.35 8.73 7.42 -154.67 -1.15 7.58 16 14 C -0.24 -6.14 8.60 -38.46 -0.33 -6.47 16 15 C 0.14 3.83 5.58 -106.55 -0.59 3.24 16 16 C -0.46 -11.80 9.13 -37.65 -0.34 -12.15 16 17 H 0.08 2.00 7.87 -52.48 -0.41 1.59 16 18 C 0.08 1.84 5.30 -17.34 -0.09 1.74 16 19 N -0.80 -19.74 10.83 55.55 0.60 -19.14 16 20 Si 0.91 18.05 29.57 -169.99 -5.03 13.03 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.28 -6.97 9.85 -39.07 -0.38 -7.36 16 25 C 0.12 2.88 11.10 -18.05 -0.20 2.68 16 26 N -0.55 -14.35 7.86 -12.76 -0.10 -14.45 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 31 H 0.05 0.38 6.43 -51.93 -0.33 0.05 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.57 6.58 -51.93 -0.34 0.23 16 36 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 37 H 0.38 2.34 9.04 45.56 0.41 2.75 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.39 4.52 7.01 -40.82 -0.29 4.24 16 41 H 0.40 6.69 8.72 -40.82 -0.36 6.33 16 42 H 0.13 3.25 6.27 -52.49 -0.33 2.92 16 43 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 44 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -33.57 373.90 -8.22 -41.79 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -5.74 Total: 14.89 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.43 Total: 4.24 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.08 Total: -57.62 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.73 Total: -21.95 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.57 -8.22 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.669 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds