Wall clock time and date at job start Tue Mar 31 2020 16:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46984 * 2 1 4 4 C 1.53007 * 109.47020 * 240.00205 * 2 1 3 5 5 C 1.52996 * 109.46763 * 184.99841 * 4 2 1 6 6 H 1.09003 * 109.47686 * 304.99836 * 5 4 2 7 7 C 1.50702 * 109.46810 * 184.99972 * 5 4 2 8 8 O 1.21292 * 120.00361 * 325.60276 * 7 5 4 9 9 N 1.34778 * 119.99987 * 145.60352 * 7 5 4 10 10 C 1.37099 * 119.99878 * 185.25192 * 9 7 5 11 11 H 1.07999 * 120.00109 * 171.39975 * 10 9 7 12 12 C 1.38950 * 120.00351 * 351.39323 * 10 9 7 13 13 N 1.31420 * 119.99517 * 91.12921 * 12 10 9 14 14 Si 1.86803 * 120.00295 * 271.13522 * 12 10 9 15 15 H 1.48495 * 109.46964 * 95.04313 * 14 12 10 16 16 H 1.48496 * 109.46727 * 215.03980 * 14 12 10 17 17 H 1.48498 * 109.46883 * 335.04453 * 14 12 10 18 18 C 1.46500 * 120.00196 * 5.25815 * 9 7 5 19 19 C 1.52999 * 109.47307 * 89.99267 * 18 9 7 20 20 C 1.50698 * 109.47011 * 180.02562 * 19 18 9 21 21 O 1.20824 * 120.00246 * 0.02562 * 20 19 18 22 22 O 1.34230 * 120.00246 * 180.02562 * 20 19 18 23 23 N 1.46496 * 109.47632 * 65.00114 * 5 4 2 24 24 C 1.36878 * 126.39775 * 245.92938 * 23 5 4 25 25 C 1.34669 * 106.81791 * 179.83753 * 24 23 5 26 26 N 1.34127 * 108.01973 * 0.42299 * 25 24 23 27 27 C 1.30498 * 109.25824 * 359.72900 * 26 25 24 28 28 H 1.08995 * 109.47192 * 59.99933 * 1 2 3 29 29 H 1.09005 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47172 * 299.99456 * 1 2 3 31 31 H 1.09001 * 109.47604 * 120.00039 * 2 1 3 32 32 H 1.09000 * 109.47229 * 60.00120 * 3 2 1 33 33 H 1.09007 * 109.47288 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47586 * 299.99962 * 3 2 1 35 35 H 1.08999 * 109.46765 * 304.99601 * 4 2 1 36 36 H 1.08996 * 109.47198 * 64.99966 * 4 2 1 37 37 H 0.97002 * 119.99603 * 184.90224 * 13 12 10 38 38 H 1.09002 * 109.46969 * 209.99964 * 18 9 7 39 39 H 1.09001 * 109.46852 * 329.99480 * 18 9 7 40 40 H 1.08989 * 109.47534 * 300.00576 * 19 18 9 41 41 H 1.09000 * 109.46705 * 60.00760 * 19 18 9 42 42 H 0.96698 * 117.00376 * 180.02562 * 22 20 19 43 43 H 1.07995 * 126.59287 * 359.97438 * 24 23 5 44 44 H 1.08006 * 125.99219 * 180.11958 * 25 24 23 45 45 H 1.07999 * 125.64996 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8310 -1.1880 6 1 3.9954 0.1612 -1.0528 7 6 4.0773 -1.4301 -2.4723 8 8 3.4231 -2.2703 -3.0531 9 7 5.2626 -1.0325 -2.9756 10 6 5.6792 -1.4963 -4.1966 11 1 6.5574 -1.0751 -4.6634 12 6 4.9717 -2.5084 -4.8337 13 7 4.0031 -2.2074 -5.6692 14 14 5.3974 -4.2969 -4.5024 15 1 4.5067 -4.8290 -3.4400 16 1 5.2127 -5.0880 -5.7454 17 1 6.8110 -4.3951 -4.0583 18 6 6.1060 -0.1046 -2.2179 19 6 7.0476 -0.8974 -1.3091 20 6 7.9146 0.0571 -0.5293 21 8 7.7917 1.2491 -0.6840 22 8 8.8235 -0.4169 0.3374 23 7 3.9480 -1.6871 -0.0627 24 6 4.6277 -1.2974 1.0596 25 6 4.7651 -2.3922 1.8317 26 7 4.1932 -3.4242 1.1938 27 6 3.7016 -3.0094 0.0584 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6054 -1.7198 -1.2952 36 1 1.7516 -0.1583 -2.1370 37 1 3.4626 -2.9121 -6.0593 38 1 6.6923 0.5007 -2.9092 39 1 5.4762 0.5452 -1.6102 40 1 6.4613 -1.5027 -0.6179 41 1 7.6774 -1.5471 -1.9168 42 1 9.3561 0.2339 0.8148 43 1 4.9834 -0.3027 1.2840 44 1 5.2547 -2.4332 2.7936 45 1 3.1840 -3.6221 -0.6648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591118004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:34 Heat of formation + Delta-G solvation = -41.525063 kcal Electronic energy + Delta-G solvation = -29816.946288 eV Core-core repulsion = 25836.918033 eV Total energy + Delta-G solvation = -3980.028255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.80272 -40.15919 -38.78348 -36.63265 -36.10980 -34.71556 -33.43480 -32.58394 -30.52543 -29.39332 -28.53869 -27.14281 -25.86484 -24.63087 -23.28993 -21.26315 -20.93737 -20.82206 -19.86029 -19.24095 -18.06893 -17.46666 -16.67510 -16.40052 -16.01072 -15.47904 -15.40404 -14.74505 -14.47117 -14.08045 -14.00016 -13.83042 -13.67753 -13.53140 -13.11440 -13.05556 -12.87812 -12.64710 -12.28604 -12.19143 -12.04637 -11.93920 -11.71524 -11.53565 -11.46901 -11.14615 -10.86730 -10.69315 -10.59222 -10.53210 -10.52017 -10.43598 -10.09000 -9.58256 -9.37078 -8.82026 -8.51176 -8.11603 -7.64206 -6.98914 -3.54732 2.29876 2.47054 2.89038 3.14339 3.29360 3.47321 3.54601 3.58744 4.03021 4.15156 4.55365 4.59919 4.90751 4.97015 4.97463 5.09117 5.13828 5.17838 5.26851 5.34593 5.45324 5.51435 5.65156 5.65598 5.75017 5.76257 5.80159 5.86027 5.92565 6.01300 6.04357 6.07398 6.12099 6.24830 6.30989 6.42024 6.49857 6.55754 6.74397 7.11217 7.22310 7.61898 7.76748 7.96557 8.50268 8.58076 8.99726 9.33247 9.98759 10.01550 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008425 B = 0.007306 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.705115 B = 3831.540562 C = 5233.044864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.103 4.103 5 C 0.123 3.877 6 H 0.100 0.900 7 C 0.372 3.628 8 O -0.562 6.562 9 N -0.388 5.388 10 C -0.515 4.515 11 H 0.103 0.897 12 C 0.236 3.764 13 N -0.685 5.685 14 Si 0.804 3.196 15 H -0.263 1.263 16 H -0.292 1.292 17 H -0.269 1.269 18 C 0.122 3.878 19 C -0.136 4.136 20 C 0.487 3.513 21 O -0.522 6.522 22 O -0.516 6.516 23 N -0.433 5.433 24 C -0.070 4.070 25 C -0.034 4.034 26 N -0.506 5.506 27 C 0.205 3.795 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.280 0.720 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.404 0.596 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 6.230 10.552 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.206 4.206 4 C -0.142 4.142 5 C 0.017 3.983 6 H 0.118 0.882 7 C 0.165 3.835 8 O -0.448 6.448 9 N -0.104 5.104 10 C -0.628 4.628 11 H 0.121 0.879 12 C 0.000 4.000 13 N -0.304 5.304 14 Si 0.624 3.376 15 H -0.188 1.188 16 H -0.219 1.219 17 H -0.194 1.194 18 C -0.004 4.004 19 C -0.175 4.175 20 C 0.330 3.670 21 O -0.411 6.411 22 O -0.327 6.327 23 N -0.116 5.116 24 C -0.204 4.204 25 C -0.183 4.183 26 N -0.224 5.224 27 C -0.078 4.078 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.263 0.737 43 H 0.180 0.820 44 H 0.179 0.821 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.523 5.270 9.926 11.251 hybrid contribution 0.761 0.386 0.268 0.894 sum 0.238 5.655 10.194 11.660 Atomic orbital electron populations 1.21779 0.95050 1.01732 1.01437 1.21154 0.95923 0.96167 0.98559 1.21900 1.00848 0.96096 1.01711 1.21733 0.91905 1.02374 0.98155 1.21746 0.97359 0.94196 0.84958 0.88194 1.19188 0.84042 0.91794 0.88471 1.90492 1.57498 1.35657 1.61197 1.43505 1.13241 1.37534 1.16129 1.18150 1.18135 1.28496 0.98065 0.87926 1.24708 0.88664 0.99658 0.86979 1.70760 1.08528 1.37829 1.13252 0.88222 0.80588 0.89263 0.79562 1.18783 1.21929 1.19398 1.21217 0.93163 0.91590 0.94429 1.22011 0.98124 0.98452 0.98892 1.23629 0.77966 0.88729 0.76726 1.90697 1.67829 1.18046 1.64481 1.84606 1.49027 1.45481 1.53626 1.45802 1.40871 1.09575 1.15309 1.22576 1.06485 1.01129 0.90197 1.22155 1.05911 0.89072 1.01148 1.70324 1.15352 1.30766 1.06003 1.24970 1.02990 0.82739 0.97096 0.92606 0.92707 0.92989 0.91203 0.92848 0.92930 0.92418 0.90276 0.89846 0.90836 0.89731 0.91323 0.87581 0.86608 0.73748 0.82031 0.82110 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 2 C -0.10 -1.28 2.86 -90.62 -0.26 -1.54 16 3 C -0.15 -1.72 8.95 37.16 0.33 -1.38 16 4 C -0.10 -1.64 3.78 -26.73 -0.10 -1.74 16 5 C 0.12 2.12 2.10 -69.09 -0.15 1.97 16 6 H 0.10 1.58 3.91 -51.93 -0.20 1.38 16 7 C 0.37 8.23 6.43 -10.98 -0.07 8.16 16 8 O -0.56 -14.33 12.55 5.55 0.07 -14.26 16 9 N -0.39 -8.66 2.62 -114.81 -0.30 -8.96 16 10 C -0.52 -13.05 9.49 -14.93 -0.14 -13.19 16 11 H 0.10 2.61 8.04 -52.49 -0.42 2.18 16 12 C 0.24 6.12 2.98 -17.46 -0.05 6.07 16 13 N -0.68 -18.00 13.39 55.50 0.74 -17.26 16 14 Si 0.80 19.75 28.57 -169.99 -4.86 14.89 16 15 H -0.26 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.12 2.19 4.56 -4.04 -0.02 2.17 16 19 C -0.14 -2.20 6.14 -27.88 -0.17 -2.37 16 20 C 0.49 6.95 8.33 36.00 0.30 7.25 16 21 O -0.52 -8.40 16.74 -18.75 -0.31 -8.72 16 22 O -0.52 -5.95 13.42 -39.26 -0.53 -6.48 16 23 N -0.43 -7.19 1.64 -112.70 -0.18 -7.38 16 24 C -0.07 -1.03 9.77 -16.56 -0.16 -1.19 16 25 C -0.03 -0.53 11.87 -17.81 -0.21 -0.74 16 26 N -0.51 -9.35 11.25 -14.66 -0.16 -9.51 16 27 C 0.21 3.81 11.66 -90.37 -1.05 2.75 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.97 7.46 -51.93 -0.39 0.59 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.62 6.46 -51.92 -0.34 0.28 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.37 7.81 -51.93 -0.41 0.97 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.28 6.88 8.32 -40.82 -0.34 6.54 16 38 H 0.08 1.54 7.99 -51.93 -0.41 1.12 16 39 H 0.07 1.13 5.62 -51.93 -0.29 0.84 16 40 H 0.11 1.80 6.01 -51.93 -0.31 1.48 16 41 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 42 H 0.40 2.70 9.10 45.56 0.41 3.12 16 43 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 44 H 0.16 2.06 8.06 -52.48 -0.42 1.64 16 45 H 0.20 3.83 8.06 -52.49 -0.42 3.41 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -30.89 371.51 -7.07 -37.96 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.72 Total: 9.21 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.41 Total: 4.91 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.09 Total: -43.11 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.77 Total: -29.45 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.86 Total: 14.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.89 -7.07 -37.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591118004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.566 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds