Wall clock time and date at job start Tue Mar 31 2020 16:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46984 * 2 1 4 4 C 1.53007 * 109.47020 * 240.00205 * 2 1 3 5 5 C 1.52996 * 109.46763 * 184.99841 * 4 2 1 6 6 H 1.09003 * 109.47686 * 304.99836 * 5 4 2 7 7 C 1.50702 * 109.46810 * 184.99972 * 5 4 2 8 8 O 1.21292 * 120.00361 * 325.60276 * 7 5 4 9 9 N 1.34778 * 119.99987 * 145.60352 * 7 5 4 10 10 C 1.37099 * 119.99878 * 185.25192 * 9 7 5 11 11 H 1.07999 * 120.00109 * 171.39975 * 10 9 7 12 12 C 1.38950 * 120.00351 * 351.39323 * 10 9 7 13 13 N 1.31420 * 119.99517 * 91.12921 * 12 10 9 14 14 Si 1.86803 * 120.00295 * 271.13522 * 12 10 9 15 15 H 1.48495 * 109.46964 * 95.04313 * 14 12 10 16 16 H 1.48496 * 109.46727 * 215.03980 * 14 12 10 17 17 H 1.48498 * 109.46883 * 335.04453 * 14 12 10 18 18 C 1.46500 * 120.00196 * 5.25815 * 9 7 5 19 19 C 1.52999 * 109.47307 * 89.99267 * 18 9 7 20 20 C 1.50698 * 109.47011 * 180.02562 * 19 18 9 21 21 O 1.20824 * 120.00246 * 0.02562 * 20 19 18 22 22 O 1.34230 * 120.00246 * 180.02562 * 20 19 18 23 23 N 1.46496 * 109.47632 * 65.00114 * 5 4 2 24 24 C 1.36878 * 126.39775 * 245.92938 * 23 5 4 25 25 C 1.34669 * 106.81791 * 179.83753 * 24 23 5 26 26 N 1.34127 * 108.01973 * 0.42299 * 25 24 23 27 27 C 1.30498 * 109.25824 * 359.72900 * 26 25 24 28 28 H 1.08995 * 109.47192 * 59.99933 * 1 2 3 29 29 H 1.09005 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47172 * 299.99456 * 1 2 3 31 31 H 1.09001 * 109.47604 * 120.00039 * 2 1 3 32 32 H 1.09000 * 109.47229 * 60.00120 * 3 2 1 33 33 H 1.09007 * 109.47288 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47586 * 299.99962 * 3 2 1 35 35 H 1.08999 * 109.46765 * 304.99601 * 4 2 1 36 36 H 1.08996 * 109.47198 * 64.99966 * 4 2 1 37 37 H 0.97002 * 119.99603 * 184.90224 * 13 12 10 38 38 H 1.09002 * 109.46969 * 209.99964 * 18 9 7 39 39 H 1.09001 * 109.46852 * 329.99480 * 18 9 7 40 40 H 1.08989 * 109.47534 * 300.00576 * 19 18 9 41 41 H 1.09000 * 109.46705 * 60.00760 * 19 18 9 42 42 H 0.96698 * 117.00376 * 180.02562 * 22 20 19 43 43 H 1.07995 * 126.59287 * 359.97438 * 24 23 5 44 44 H 1.08006 * 125.99219 * 180.11958 * 25 24 23 45 45 H 1.07999 * 125.64996 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8310 -1.1880 6 1 3.9954 0.1612 -1.0528 7 6 4.0773 -1.4301 -2.4723 8 8 3.4231 -2.2703 -3.0531 9 7 5.2626 -1.0325 -2.9756 10 6 5.6792 -1.4963 -4.1966 11 1 6.5574 -1.0751 -4.6634 12 6 4.9717 -2.5084 -4.8337 13 7 4.0031 -2.2074 -5.6692 14 14 5.3974 -4.2969 -4.5024 15 1 4.5067 -4.8290 -3.4400 16 1 5.2127 -5.0880 -5.7454 17 1 6.8110 -4.3951 -4.0583 18 6 6.1060 -0.1046 -2.2179 19 6 7.0476 -0.8974 -1.3091 20 6 7.9146 0.0571 -0.5293 21 8 7.7917 1.2491 -0.6840 22 8 8.8235 -0.4169 0.3374 23 7 3.9480 -1.6871 -0.0627 24 6 4.6277 -1.2974 1.0596 25 6 4.7651 -2.3922 1.8317 26 7 4.1932 -3.4242 1.1938 27 6 3.7016 -3.0094 0.0584 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6054 -1.7198 -1.2952 36 1 1.7516 -0.1583 -2.1370 37 1 3.4626 -2.9121 -6.0593 38 1 6.6923 0.5007 -2.9092 39 1 5.4762 0.5452 -1.6102 40 1 6.4613 -1.5027 -0.6179 41 1 7.6774 -1.5471 -1.9168 42 1 9.3561 0.2339 0.8148 43 1 4.9834 -0.3027 1.2840 44 1 5.2547 -2.4332 2.7936 45 1 3.1840 -3.6221 -0.6648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591118004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:32 Heat of formation + Delta-G solvation = -59.053434 kcal Electronic energy + Delta-G solvation = -29817.706376 eV Core-core repulsion = 25836.918033 eV Total energy + Delta-G solvation = -3980.788343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.15022 -41.30918 -40.39777 -37.86992 -37.19777 -36.36760 -35.06292 -34.18501 -32.03206 -30.72646 -29.83545 -28.05975 -27.52818 -26.02778 -24.79155 -22.66489 -22.21308 -22.05563 -21.21330 -20.64133 -19.26978 -19.03955 -17.99314 -17.83580 -17.26162 -16.81945 -16.74109 -16.67775 -15.89003 -15.53766 -15.43118 -15.05671 -14.89739 -14.80247 -14.49490 -14.43959 -14.17999 -14.11512 -13.94534 -13.47225 -13.31108 -13.18444 -13.03973 -12.99482 -12.71965 -12.57243 -12.51668 -12.24421 -12.01368 -11.80712 -11.69774 -11.63009 -11.58951 -11.03190 -10.86655 -10.57093 -10.28848 -9.57030 -9.35584 -8.98383 -5.48956 1.12864 1.17325 1.27935 1.40124 1.46803 1.60636 1.98814 2.22358 2.26956 2.40529 2.68798 2.99145 3.54712 3.70898 3.77675 3.82574 3.88156 3.90159 4.01752 4.06384 4.16389 4.35412 4.39304 4.53369 4.58172 4.67598 4.68886 4.73142 4.77836 4.82327 4.93688 4.97535 5.01057 5.03963 5.23177 5.27136 5.38346 5.43721 5.44512 5.59754 5.88083 5.93371 6.23089 6.68913 7.01667 7.13807 7.19456 7.48704 8.01805 8.22035 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008425 B = 0.007306 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.705115 B = 3831.540562 C = 5233.044864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.099 4.099 5 C 0.138 3.862 6 H 0.123 0.877 7 C 0.372 3.628 8 O -0.600 6.600 9 N -0.401 5.401 10 C -0.544 4.544 11 H 0.095 0.905 12 C 0.227 3.773 13 N -0.706 5.706 14 Si 0.831 3.169 15 H -0.291 1.291 16 H -0.283 1.283 17 H -0.268 1.268 18 C 0.122 3.878 19 C -0.129 4.129 20 C 0.504 3.496 21 O -0.538 6.538 22 O -0.509 6.509 23 N -0.430 5.430 24 C -0.052 4.052 25 C -0.042 4.042 26 N -0.524 5.524 27 C 0.179 3.821 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.284 0.716 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.430 0.570 43 H 0.197 0.803 44 H 0.192 0.808 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.054 8.181 13.136 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.137 4.137 5 C 0.032 3.968 6 H 0.140 0.860 7 C 0.165 3.835 8 O -0.488 6.488 9 N -0.117 5.117 10 C -0.657 4.657 11 H 0.113 0.887 12 C -0.008 4.008 13 N -0.325 5.325 14 Si 0.651 3.349 15 H -0.217 1.217 16 H -0.210 1.210 17 H -0.193 1.193 18 C -0.002 4.002 19 C -0.168 4.168 20 C 0.347 3.653 21 O -0.429 6.429 22 O -0.322 6.322 23 N -0.112 5.112 24 C -0.185 4.185 25 C -0.190 4.190 26 N -0.243 5.243 27 C -0.104 4.104 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.292 0.708 43 H 0.214 0.786 44 H 0.209 0.791 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.292 7.230 12.523 14.463 hybrid contribution 0.537 -0.222 -0.429 0.722 sum 0.829 7.008 12.094 14.002 Atomic orbital electron populations 1.21770 0.94012 1.01565 1.02510 1.21070 0.96773 0.96753 0.96204 1.21899 1.00881 0.94823 1.02790 1.21701 0.90951 1.01490 0.99604 1.21534 0.98057 0.94356 0.82816 0.85954 1.20055 0.83417 0.90545 0.89517 1.90468 1.58515 1.37087 1.62728 1.43611 1.14066 1.38218 1.15779 1.18132 1.18346 1.29467 0.99717 0.88704 1.25005 0.88432 1.00818 0.86540 1.70787 1.09280 1.38425 1.14046 0.87801 0.79674 0.88539 0.78858 1.21734 1.20961 1.19266 1.21324 0.93283 0.91139 0.94490 1.21747 0.98063 0.98390 0.98636 1.22935 0.78030 0.87636 0.76737 1.90707 1.68534 1.18484 1.65172 1.84529 1.48479 1.46268 1.52954 1.45630 1.41107 1.08845 1.15639 1.23098 1.04448 1.02391 0.88579 1.22697 1.05685 0.88403 1.02242 1.70300 1.15720 1.32223 1.06104 1.24637 1.04671 0.83591 0.97463 0.92392 0.93577 0.91031 0.91756 0.90853 0.92822 0.92344 0.92548 0.90876 0.90393 0.90114 0.89378 0.88107 0.87666 0.70834 0.78566 0.79136 0.80547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.09 -2.13 2.86 -10.79 -0.03 -2.16 16 3 C -0.15 -2.90 8.95 71.98 0.64 -2.25 16 4 C -0.10 -3.11 3.78 30.60 0.12 -2.99 16 5 C 0.14 4.61 2.10 44.25 0.09 4.71 16 6 H 0.12 3.54 3.91 -2.39 -0.01 3.53 16 7 C 0.37 16.59 6.43 87.66 0.56 17.15 16 8 O -0.60 -31.59 12.55 -3.07 -0.04 -31.62 16 9 N -0.40 -17.92 2.62 -635.53 -1.67 -19.59 16 10 C -0.54 -28.04 9.49 84.04 0.80 -27.24 16 11 H 0.10 4.94 8.04 -2.91 -0.02 4.91 16 12 C 0.23 12.04 2.98 84.93 0.25 12.30 16 13 N -0.71 -37.98 13.39 21.66 0.29 -37.69 16 14 Si 0.83 41.50 28.57 68.60 1.96 43.46 16 15 H -0.29 -15.78 7.11 99.48 0.71 -15.07 16 16 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 17 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 18 C 0.12 4.23 4.56 86.38 0.39 4.63 16 19 C -0.13 -3.96 6.14 29.85 0.18 -3.78 16 20 C 0.50 12.81 8.33 71.24 0.59 13.40 16 21 O -0.54 -15.61 16.74 21.97 0.37 -15.24 16 22 O -0.51 -9.77 13.42 -51.42 -0.69 -10.46 16 23 N -0.43 -13.70 1.64 -510.48 -0.84 -14.53 16 24 C -0.05 -1.36 9.77 83.09 0.81 -0.55 16 25 C -0.04 -1.20 11.87 83.52 0.99 -0.21 16 26 N -0.52 -18.93 11.25 -200.30 -2.25 -21.18 16 27 C 0.18 6.70 11.66 180.26 2.10 8.80 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.63 7.46 -2.39 -0.02 1.61 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.04 6.46 -2.38 -0.02 1.03 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 2.02 7.81 -2.39 -0.02 2.00 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.28 14.35 8.32 -92.71 -0.77 13.58 16 38 H 0.08 2.87 7.99 -2.39 -0.02 2.85 16 39 H 0.09 2.67 5.62 -2.39 -0.01 2.65 16 40 H 0.10 3.20 6.01 -2.39 -0.01 3.19 16 41 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.43 3.86 9.10 -74.06 -0.67 3.19 16 43 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 45 H 0.18 7.29 8.06 -2.91 -0.02 7.27 16 Total: -1.00 -68.22 371.51 5.64 -62.57 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.34 Total: 24.81 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 8.17 Total: 19.46 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -4.47 Total: -92.99 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -0.36 Total: -57.32 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.96 Total: 43.46 kcal Total: -68.22 5.64 -62.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591118004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.519 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds