Wall clock time and date at job start Tue Mar 31 2020 13:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40358 * 126.64545 * 2 1 4 4 C 1.35132 * 107.11378 * 179.84068 * 3 2 1 5 5 O 1.33926 * 108.76759 * 0.42529 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72933 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47059 * 324.99968 * 10 9 7 12 12 C 1.53000 * 109.46968 * 85.00308 * 10 9 7 13 13 C 1.52996 * 109.46889 * 205.00016 * 10 9 7 14 14 N 1.46896 * 109.47306 * 55.00322 * 13 10 9 15 15 C 1.46894 * 111.00292 * 66.04313 * 14 13 10 16 16 C 1.46902 * 111.00239 * 189.99963 * 14 13 10 17 17 C 1.50703 * 109.47361 * 170.00009 * 16 14 13 18 18 O 1.21294 * 119.99857 * 359.97438 * 17 16 14 19 19 N 1.34776 * 119.99818 * 179.97438 * 17 16 14 20 20 C 1.37098 * 119.99606 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00190 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00039 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99891 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00168 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47128 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47258 * 120.00183 * 24 22 20 27 27 H 1.48500 * 109.47323 * 240.00066 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68806 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68907 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68887 * 1 2 3 31 31 H 1.07998 * 126.44501 * 359.97238 * 3 2 1 32 32 H 1.08006 * 125.61408 * 180.12228 * 4 3 2 33 33 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.46806 * 299.99798 * 12 10 9 35 35 H 1.09000 * 109.47168 * 59.99568 * 12 10 9 36 36 H 1.08998 * 109.47248 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.46914 * 174.99924 * 13 10 9 38 38 H 1.08998 * 109.47713 * 295.00194 * 13 10 9 39 39 H 1.09000 * 109.47621 * 60.00050 * 15 14 13 40 40 H 1.08998 * 109.47538 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47265 * 300.00329 * 15 14 13 42 42 H 1.09004 * 109.46995 * 289.99621 * 16 14 13 43 43 H 1.09002 * 109.47275 * 49.99790 * 16 14 13 44 44 H 0.96991 * 120.00143 * 359.97438 * 19 17 16 45 45 H 0.96998 * 120.00122 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0036 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0140 8 8 0.6968 -2.7614 -0.0159 9 7 2.7971 -3.4868 -0.0194 10 6 2.3598 -4.8850 -0.0269 11 1 1.4480 -4.9836 0.5620 12 6 2.0876 -5.3265 -1.4663 13 6 3.4553 -5.7652 0.5780 14 7 3.8009 -5.2668 1.9159 15 6 2.6734 -5.4249 2.8441 16 6 5.0044 -5.9331 2.4312 17 6 5.4692 -5.2335 3.6825 18 8 4.8583 -4.2738 4.1032 19 7 6.5637 -5.6741 4.3339 20 6 6.9868 -5.0372 5.4719 21 1 6.4433 -4.1823 5.8461 22 6 8.1149 -5.4917 6.1439 23 7 8.7760 -6.5323 5.6888 24 14 8.6910 -4.6245 7.6948 25 1 7.7808 -3.4902 7.9947 26 1 8.6807 -5.5816 8.8300 27 1 10.0699 -4.1118 7.4921 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 2.0306 2.1594 -0.0004 32 1 4.5046 1.2916 0.0064 33 1 3.7436 -3.2746 -0.0183 34 1 1.3071 -4.6993 -1.8972 35 1 2.9995 -5.2277 -2.0552 36 1 1.7627 -6.3669 -1.4720 37 1 3.0960 -6.7915 0.6542 38 1 4.3386 -5.7359 -0.0600 39 1 2.4114 -6.4801 2.9212 40 1 2.9562 -5.0476 3.8268 41 1 1.8158 -4.8638 2.4729 42 1 4.7736 -6.9733 2.6611 43 1 5.7921 -5.8934 1.6788 44 1 7.0520 -6.4417 3.9976 45 1 9.5637 -6.8494 6.1577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699439619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:28 Heat of formation + Delta-G solvation = -52.126576 kcal Electronic energy + Delta-G solvation = -27539.441095 eV Core-core repulsion = 23558.953123 eV Total energy + Delta-G solvation = -3980.487972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.74171 -39.70554 -38.56824 -36.99962 -34.89610 -34.05998 -33.73502 -31.54130 -31.23174 -30.12564 -28.00069 -27.57257 -26.91491 -24.83721 -23.55861 -22.42997 -21.49217 -20.36362 -19.98628 -19.14724 -18.19780 -17.83443 -16.46040 -16.31088 -16.27806 -15.87685 -15.28805 -14.86139 -14.69744 -14.41475 -14.23944 -14.00726 -13.68548 -13.53373 -13.38901 -13.17365 -13.07689 -12.86378 -12.62739 -12.48660 -12.12217 -12.02521 -11.88941 -11.82013 -11.51374 -11.36173 -11.24973 -10.93850 -10.73670 -10.34578 -10.22659 -10.08717 -9.78548 -9.48698 -9.13879 -8.60562 -8.45538 -7.98150 -7.86902 -6.42116 -3.82679 1.04093 2.26162 2.67821 3.15804 3.18673 3.26418 3.27365 3.33722 3.90258 3.94872 4.23702 4.60897 4.68634 4.72925 4.85584 5.04579 5.11361 5.19354 5.25773 5.36138 5.42114 5.44252 5.51211 5.56572 5.64153 5.66975 5.70936 5.73512 5.88948 5.94781 5.95897 5.98823 6.04131 6.07972 6.27926 6.30525 6.47970 6.58826 6.80215 7.23933 7.35013 7.55271 7.56106 8.06677 8.15371 8.61969 9.18430 9.54644 10.06722 10.75790 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003048 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.375576 B = 9185.180394 C =10626.632955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.093 4.093 3 C -0.229 4.229 4 C -0.002 4.002 5 O -0.158 6.158 6 C -0.079 4.079 7 C 0.606 3.394 8 O -0.530 6.530 9 N -0.693 5.693 10 C 0.147 3.853 11 H 0.090 0.910 12 C -0.162 4.162 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.021 3.979 16 C 0.045 3.955 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.154 0.846 32 H 0.209 0.791 33 H 0.410 0.590 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.015 0.985 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.391 0.609 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 6.397 -15.752 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.248 4.248 4 C -0.072 4.072 5 O -0.053 6.053 6 C -0.131 4.131 7 C 0.393 3.607 8 O -0.409 6.409 9 N -0.343 5.343 10 C 0.042 3.958 11 H 0.108 0.892 12 C -0.221 4.221 13 C -0.087 4.087 14 N -0.239 5.239 15 C -0.127 4.127 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.226 0.774 33 H 0.245 0.755 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.409 7.011 -15.416 20.420 hybrid contribution 1.128 -0.627 0.726 1.480 sum -10.281 6.384 -14.691 19.033 Atomic orbital electron populations 1.20399 0.88368 1.03260 1.02886 1.20611 0.97581 0.91058 1.00371 1.21712 0.92492 1.00053 1.10547 1.24360 0.99932 0.80728 1.02225 1.84098 1.28297 1.22607 1.70314 1.21890 0.81515 0.94900 1.14832 1.16468 0.85705 0.81880 0.76641 1.90809 1.15802 1.82444 1.51888 1.45707 1.10190 1.05375 1.73028 1.21012 0.98309 0.80070 0.96401 0.89153 1.22161 1.02252 1.01714 0.95953 1.22503 0.98362 0.96261 0.91566 1.61559 1.04300 1.56744 1.01325 1.22561 0.92744 0.98144 0.99214 1.21880 0.93225 0.95873 0.97630 1.19733 0.83679 0.87253 0.86385 1.90500 1.57156 1.29370 1.68893 1.41870 1.24435 1.29656 1.24259 1.19741 1.09317 1.12562 1.01048 0.87901 1.25250 0.96444 0.96584 0.99693 1.69618 1.19440 1.24555 1.40801 0.85815 0.78536 0.79210 0.80883 1.19229 1.20788 1.20760 0.90867 0.89581 0.91747 0.82846 0.77442 0.75453 0.91799 0.92241 0.91467 0.93336 0.90183 0.96682 0.88602 0.92127 0.93437 0.89435 0.77544 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.82 36.01 0.35 -0.68 16 2 C -0.09 -1.19 6.20 -104.43 -0.65 -1.83 16 3 C -0.23 -2.38 10.83 -39.89 -0.43 -2.81 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.33 16 5 O -0.16 -2.08 10.40 5.02 0.05 -2.03 16 6 C -0.08 -1.12 7.13 -36.80 -0.26 -1.38 16 7 C 0.61 8.95 7.75 -12.86 -0.10 8.85 16 8 O -0.53 -8.67 14.40 5.20 0.07 -8.59 16 9 N -0.69 -9.11 4.80 -55.12 -0.26 -9.37 16 10 C 0.15 1.73 2.35 -67.93 -0.16 1.57 16 11 H 0.09 1.21 6.23 -51.93 -0.32 0.89 16 12 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 13 C 0.04 0.49 4.52 -3.83 -0.02 0.48 16 14 N -0.52 -8.23 4.22 -244.37 -1.03 -9.26 16 15 C 0.02 0.35 8.96 60.06 0.54 0.89 16 16 C 0.05 0.78 5.45 -4.97 -0.03 0.75 16 17 C 0.44 10.31 7.47 -10.98 -0.08 10.23 16 18 O -0.58 -15.36 13.91 5.54 0.08 -15.28 16 19 N -0.57 -14.16 5.29 -10.96 -0.06 -14.22 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.06 6.44 -51.93 -0.33 0.73 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.21 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.41 5.29 8.36 -40.82 -0.34 4.95 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 39 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.96 5.83 -51.93 -0.30 1.65 16 41 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 42 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 43 H 0.09 1.34 7.93 -51.93 -0.41 0.92 16 44 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -33.03 378.03 -6.64 -39.68 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.53 Total: 13.79 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -0.37 Total: 7.32 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.63 Total: -56.57 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: 0.20 Total: -25.91 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.03 -6.64 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699439619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.451 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds