Wall clock time and date at job start Tue Mar 31 2020 13:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47186 * 2 1 4 4 N 1.46498 * 109.46987 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99943 * 179.97438 * 4 3 2 6 6 O 1.21536 * 119.99762 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00189 * 179.97438 * 5 4 3 8 8 C 1.34778 * 120.00189 * 179.97438 * 7 5 4 9 9 O 1.21237 * 119.99762 * 0.02562 * 8 7 5 10 10 C 1.50696 * 119.99957 * 179.97438 * 8 7 5 11 11 N 1.46896 * 109.47145 * 177.35633 * 10 8 7 12 12 C 1.46897 * 111.00122 * 72.54839 * 11 10 8 13 13 C 1.50702 * 109.47336 * 189.99877 * 12 11 10 14 14 H 1.08006 * 119.99919 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99989 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00117 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99828 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47376 * 60.00356 * 17 15 13 19 19 H 1.48506 * 109.47279 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47356 * 299.99830 * 17 15 13 21 21 C 1.46899 * 111.00139 * 196.50657 * 11 10 8 22 22 C 1.50699 * 109.47398 * 76.30773 * 21 11 10 23 23 C 1.34516 * 125.79164 * 84.66453 * 22 21 11 24 24 C 1.41382 * 106.84084 * 179.97438 * 23 22 21 25 25 C 1.34515 * 106.84068 * 0.02562 * 24 23 22 26 26 O 1.34298 * 108.41888 * 359.72959 * 25 24 23 27 27 H 1.08997 * 109.46946 * 59.99943 * 1 2 3 28 28 H 1.09002 * 109.47354 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46972 * 299.99859 * 1 2 3 30 30 H 1.08998 * 109.47060 * 239.99521 * 2 1 3 31 31 H 1.08997 * 109.46946 * 120.00056 * 2 1 3 32 32 H 1.08998 * 109.47512 * 59.99798 * 3 2 1 33 33 H 1.08998 * 109.46706 * 299.99938 * 3 2 1 34 34 H 0.97000 * 120.00307 * 359.97438 * 4 3 2 35 35 H 0.97003 * 119.99546 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.47189 * 57.35749 * 10 8 7 37 37 H 1.08994 * 109.47466 * 297.35790 * 10 8 7 38 38 H 1.09001 * 109.47041 * 310.00091 * 12 11 10 39 39 H 1.09001 * 109.46858 * 70.00154 * 12 11 10 40 40 H 0.96998 * 120.00353 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.46876 * 316.30510 * 21 11 10 42 42 H 1.09006 * 109.47057 * 196.30721 * 21 11 10 43 43 H 1.07997 * 126.57779 * 0.04672 * 23 22 21 44 44 H 1.08002 * 126.57362 * 179.97438 * 24 23 22 45 45 H 1.07997 * 125.78833 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0012 6 8 3.5713 3.6622 -0.0008 7 7 5.5267 2.6096 -0.0013 8 6 6.2006 3.7768 -0.0025 9 8 5.5944 4.8268 -0.0030 10 6 7.7076 3.7768 -0.0019 11 7 8.1973 5.1602 -0.0673 12 6 7.9846 5.8548 1.2095 13 6 8.2675 7.3247 1.0349 14 1 8.5742 7.7050 0.0716 15 6 8.1347 8.1841 2.1048 16 7 7.7608 7.7212 3.2776 17 14 8.4847 10.0062 1.8882 18 1 7.5699 10.5674 0.8618 19 1 8.2698 10.7085 3.1790 20 1 9.8918 10.1916 1.4517 21 6 9.6126 5.1997 -0.4587 22 6 9.7317 4.9454 -1.9393 23 6 9.6107 5.8702 -2.9086 24 6 9.7939 5.1997 -4.1397 25 6 10.0154 3.9051 -3.8492 26 8 9.9821 3.7580 -2.5147 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9900 0.6024 -0.0006 35 1 6.0117 1.7695 -0.0013 36 1 8.0712 3.2214 -0.8665 37 1 8.0706 3.3057 0.9114 38 1 6.9514 5.7191 1.5292 39 1 8.6554 5.4428 1.9634 40 1 7.6678 8.3258 4.0305 41 1 10.1621 4.4326 0.0870 42 1 10.0273 6.1801 -0.2240 43 1 9.4128 6.9232 -2.7724 44 1 9.7614 5.6420 -5.1245 45 1 10.1947 3.1184 -4.5671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078666632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:06 Heat of formation + Delta-G solvation = -67.913308 kcal Electronic energy + Delta-G solvation = -27293.108822 eV Core-core repulsion = 23311.936287 eV Total energy + Delta-G solvation = -3981.172536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.35736 -42.18668 -39.88415 -37.95981 -36.73702 -35.71895 -34.70965 -33.80500 -33.37785 -31.62859 -30.21629 -28.16127 -27.19377 -25.86337 -23.83595 -22.65546 -22.57805 -22.31085 -21.51915 -21.11458 -19.74267 -18.58727 -18.44128 -18.02970 -17.37994 -17.06315 -16.65421 -16.57358 -16.27017 -16.10830 -15.74141 -15.49564 -15.42535 -15.04118 -14.62916 -14.15286 -13.85345 -13.81083 -13.65625 -13.52444 -13.48867 -13.18924 -13.01437 -12.91546 -12.72188 -12.52835 -12.46719 -12.16921 -12.03490 -11.89984 -11.74518 -11.38987 -11.20368 -10.76224 -10.68779 -10.56166 -10.18858 -9.32135 -9.09642 -8.19019 -6.26752 0.87868 1.09423 1.29958 1.38409 1.43695 1.50185 1.81508 2.15583 2.24147 2.40846 2.88003 3.14885 3.36695 3.75757 3.87889 3.90636 4.08436 4.19320 4.23140 4.26582 4.33611 4.35242 4.53902 4.66234 4.71217 4.73920 4.83577 5.00921 5.08802 5.11831 5.16064 5.17245 5.23348 5.25881 5.27131 5.33439 5.44260 5.55978 5.64769 5.71071 6.04524 6.21689 6.32398 6.47093 6.66159 6.86099 7.20910 7.36314 7.40901 8.92394 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.003605 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.626569 B = 7765.105614 C =10238.401012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.129 3.871 4 N -0.714 5.714 5 C 0.686 3.314 6 O -0.595 6.595 7 N -0.672 5.672 8 C 0.510 3.490 9 O -0.498 6.498 10 C 0.045 3.955 11 N -0.535 5.535 12 C 0.214 3.786 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.258 1.258 21 C 0.146 3.854 22 C -0.013 4.013 23 C -0.214 4.214 24 C -0.230 4.230 25 C -0.036 4.036 26 O -0.184 6.184 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.420 0.580 35 H 0.433 0.567 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.006 0.994 39 H -0.021 1.021 40 H 0.263 0.737 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.165 0.835 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 -22.894 -11.365 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C 0.005 3.995 4 N -0.373 5.373 5 C 0.386 3.614 6 O -0.471 6.471 7 N -0.342 5.342 8 C 0.296 3.704 9 O -0.366 6.366 10 C -0.087 4.087 11 N -0.260 5.260 12 C 0.089 3.911 13 C -0.557 4.557 14 H 0.079 0.921 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.183 1.183 21 C 0.019 3.981 22 C -0.063 4.063 23 C -0.234 4.234 24 C -0.249 4.249 25 C -0.103 4.103 26 O -0.081 6.081 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.258 0.742 35 H 0.273 0.727 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.024 0.976 39 H -0.004 1.004 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.149 0.851 44 H 0.182 0.818 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.712 -21.246 -11.364 24.246 hybrid contribution 0.577 0.472 0.758 1.063 sum -2.135 -20.773 -10.605 23.422 Atomic orbital electron populations 1.21709 0.94237 1.02982 1.02075 1.21676 0.97052 0.92951 1.04217 1.21451 0.77230 0.99523 1.01301 1.45058 1.07820 1.06239 1.78219 1.16505 0.81877 0.85078 0.77927 1.91061 1.68341 1.32633 1.55087 1.43893 1.06089 1.11832 1.72337 1.21487 0.91444 0.82645 0.74830 1.90879 1.70611 1.32705 1.42395 1.22036 0.89004 0.92661 1.04973 1.61518 1.17434 1.12708 1.34375 1.19391 0.94736 0.93301 0.83717 1.21384 1.45106 0.93348 0.95896 0.92055 1.25854 0.95173 1.03732 0.94851 1.70070 1.48735 1.36976 1.01640 0.85516 0.79255 0.79163 0.77169 1.20440 1.20807 1.18251 1.20338 0.88636 1.03160 0.85951 1.22335 1.05250 0.83114 0.95590 1.21772 1.07488 1.00929 0.93235 1.22114 1.08647 0.94835 0.99314 1.24789 1.04710 0.99320 0.81453 1.83962 1.70088 1.32876 1.21163 0.92676 0.90564 0.92899 0.89548 0.89823 0.93214 0.92836 0.74170 0.72722 0.85190 0.89187 0.97584 1.00365 0.92833 0.91795 0.88244 0.85072 0.81767 0.73774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.17 6.05 30.60 0.19 -0.99 16 3 C 0.13 2.42 5.67 86.38 0.49 2.91 16 4 N -0.71 -13.67 5.56 -478.60 -2.66 -16.33 16 5 C 0.69 21.84 8.50 179.05 1.52 23.37 16 6 O -0.60 -27.71 14.74 18.93 0.28 -27.43 16 7 N -0.67 -18.21 5.24 -440.53 -2.31 -20.52 16 8 C 0.51 19.85 7.46 87.66 0.65 20.51 16 9 O -0.50 -27.08 13.22 19.86 0.26 -26.81 16 10 C 0.04 1.49 5.28 85.56 0.45 1.94 16 11 N -0.54 -23.44 4.05 -909.96 -3.68 -27.12 16 12 C 0.21 11.74 4.34 85.56 0.37 12.11 16 13 C -0.52 -30.72 8.23 25.60 0.21 -30.51 16 14 H 0.06 3.56 7.32 -2.91 -0.02 3.54 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -58.80 13.29 21.45 0.28 -58.51 16 17 Si 0.96 46.81 29.54 68.60 2.03 48.83 16 18 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.15 5.45 5.34 85.56 0.46 5.90 16 22 C -0.01 -0.42 6.17 24.83 0.15 -0.27 16 23 C -0.21 -7.20 10.81 22.19 0.24 -6.96 16 24 C -0.23 -5.91 10.91 22.19 0.24 -5.67 16 25 C -0.04 -0.76 12.09 66.97 0.81 0.05 16 26 O -0.18 -5.01 10.26 -2.42 -0.02 -5.03 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.42 3.91 8.49 -92.71 -0.79 3.12 16 35 H 0.43 6.01 8.71 -92.71 -0.81 5.21 16 36 H 0.13 3.38 7.04 -2.38 -0.02 3.36 16 37 H 0.09 2.57 8.04 -2.39 -0.02 2.55 16 38 H 0.01 0.39 6.32 -2.39 -0.02 0.37 16 39 H -0.02 -1.19 8.12 -2.39 -0.02 -1.21 16 40 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 41 H 0.06 2.05 7.99 -2.39 -0.02 2.03 16 42 H 0.10 4.13 6.58 -2.38 -0.02 4.12 16 43 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 45 H 0.25 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -94.21 381.51 0.56 -93.65 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -0.58 Total: 17.10 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 6.96 Total: 22.18 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -8.37 Total: -122.48 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: 0.52 Total: -59.27 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -94.21 0.56 -93.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.734 kcal (2) G-P(sol) polarization free energy of solvation -94.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds