Wall clock time and date at job start Tue Mar 31 2020 14:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47270 * 2 1 4 4 C 1.46899 * 110.99821 * 76.78271 * 3 2 1 5 5 C 1.50700 * 109.47223 * 282.08445 * 4 3 2 6 6 H 1.07997 * 119.99780 * 354.68545 * 5 4 3 7 7 C 1.37875 * 120.00146 * 174.68318 * 5 4 3 8 8 N 1.31510 * 120.00267 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99884 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46890 * 90.00501 * 9 7 5 11 11 H 1.48499 * 109.47055 * 209.99977 * 9 7 5 12 12 H 1.48492 * 109.47271 * 330.00285 * 9 7 5 13 13 C 1.46902 * 111.00348 * 200.73742 * 3 2 1 14 14 H 1.09006 * 109.47160 * 192.24612 * 13 3 2 15 15 C 1.53000 * 109.46729 * 312.24327 * 13 3 2 16 16 C 1.50695 * 109.47157 * 72.24301 * 13 3 2 17 17 N 1.30118 * 124.94910 * 317.48756 * 16 13 3 18 18 C 1.35783 * 109.63831 * 179.89296 * 17 16 13 19 19 C 1.39744 * 133.59508 * 180.13060 * 18 17 16 20 20 C 1.36602 * 119.88643 * 180.29496 * 19 18 17 21 21 C 1.38781 * 120.66808 * 359.96122 * 20 19 18 22 22 C 1.37850 * 120.45058 * 0.02562 * 21 20 19 23 23 C 1.38839 * 119.69268 * 0.02562 * 22 21 20 24 24 N 1.36037 * 124.95218 * 137.78732 * 16 13 3 25 25 C 1.46502 * 126.34886 * 359.94698 * 24 16 13 26 26 F 1.39901 * 109.46967 * 299.99867 * 25 24 16 27 27 F 1.39901 * 109.46809 * 59.99603 * 25 24 16 28 28 H 1.08999 * 109.47041 * 292.70275 * 1 2 3 29 29 H 1.09002 * 109.47307 * 52.70766 * 1 2 3 30 30 H 1.08998 * 109.46918 * 172.70887 * 1 2 3 31 31 H 1.09003 * 109.47306 * 120.00320 * 2 1 3 32 32 H 1.09001 * 109.46975 * 240.00132 * 2 1 3 33 33 H 1.09000 * 109.47071 * 42.08710 * 4 3 2 34 34 H 1.09005 * 109.47290 * 162.08607 * 4 3 2 35 35 H 0.97006 * 120.00662 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46608 * 180.02562 * 15 13 3 37 37 H 1.09003 * 109.47418 * 299.99567 * 15 13 3 38 38 H 1.08995 * 109.47408 * 60.00534 * 15 13 3 39 39 H 1.07997 * 120.05887 * 0.27614 * 19 18 17 40 40 H 1.07997 * 119.67034 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.77759 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.15931 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.47171 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8995 1.9857 1.3351 5 6 0.4677 2.3884 1.5778 6 1 -0.2611 2.2948 0.7863 7 6 0.0882 2.8762 2.8102 8 7 -1.1614 3.2272 3.0222 9 14 1.3486 3.0374 4.1795 10 1 1.9771 4.3815 4.1179 11 1 0.6776 2.8645 5.4928 12 1 2.3931 1.9946 4.0161 13 6 3.4044 1.4538 -0.4856 14 1 3.8148 2.4413 -0.2744 15 6 4.2462 0.3897 0.2215 16 6 3.4283 1.2073 -1.9721 17 7 2.7352 0.2940 -2.5874 18 6 2.9911 0.3473 -3.9198 19 6 2.5306 -0.3817 -5.0194 20 6 2.9907 -0.0883 -6.2717 21 6 3.9134 0.9299 -6.4663 22 6 4.3814 1.6624 -5.3964 23 6 3.9258 1.3778 -4.1161 24 7 4.1820 1.9032 -2.8655 25 6 5.0963 3.0057 -2.5575 26 9 4.3832 4.0494 -1.9581 27 9 6.0900 2.5563 -1.6811 28 1 -0.3633 0.3966 0.9480 29 1 -0.3634 0.6226 -0.8176 30 1 -0.3633 -1.0193 -0.1304 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.2057 1.2604 2.0889 34 1 2.5398 2.8658 1.3965 35 1 -1.4286 3.5700 3.8894 36 1 5.2738 0.4411 -0.1385 37 1 4.2290 0.5680 1.2967 38 1 3.8359 -0.5977 0.0103 39 1 1.8123 -1.1760 -4.8795 40 1 2.6327 -0.6542 -7.1190 41 1 4.2672 1.1500 -7.4627 42 1 5.0997 2.4535 -5.5531 43 1 5.5583 3.3625 -3.4780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:38 Heat of formation + Delta-G solvation = 0.724667 kcal Electronic energy + Delta-G solvation = -28501.830624 eV Core-core repulsion = 24412.546939 eV Total energy + Delta-G solvation = -4089.283685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.49445 -47.56422 -42.25180 -38.21744 -37.02260 -33.96673 -32.79642 -31.52234 -30.45149 -29.50740 -28.68044 -26.68985 -26.31748 -24.36917 -22.62629 -22.11209 -21.72076 -20.65553 -19.21650 -18.47773 -17.98802 -17.93161 -16.92513 -16.79546 -15.58114 -15.30902 -15.20249 -14.71692 -14.56953 -14.34844 -14.13831 -14.07112 -13.88938 -13.77063 -13.58175 -13.28473 -12.77394 -12.54386 -12.45259 -12.21109 -11.90082 -11.77270 -11.62365 -11.42728 -11.29696 -10.91425 -10.89213 -10.81979 -10.46436 -10.26981 -10.23397 -9.94967 -9.35915 -9.05190 -8.58806 -8.48303 -8.23023 -7.39500 -5.99881 -3.95099 0.81197 1.29844 1.82189 2.64543 3.21860 3.29937 3.37555 3.38393 3.75756 3.79684 4.06582 4.11829 4.39737 4.44974 4.69484 4.76843 4.84422 5.12430 5.19655 5.24442 5.29967 5.34560 5.40697 5.54054 5.79339 5.88213 5.94960 6.10583 6.17775 6.28173 6.32696 6.35336 6.37282 6.55607 6.66242 6.71331 6.75985 6.90968 6.96602 7.14593 7.49702 7.67850 7.82271 7.96833 8.07663 8.70660 9.12748 9.61255 11.12581 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.004250 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.889188 B = 6587.359359 C = 7484.716735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 N -0.509 5.509 4 C 0.161 3.839 5 C -0.500 4.500 6 H 0.091 0.909 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.868 3.132 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.147 3.853 14 H 0.094 0.906 15 C -0.177 4.177 16 C 0.337 3.663 17 N -0.464 5.464 18 C 0.060 3.940 19 C -0.062 4.062 20 C -0.127 4.127 21 C -0.104 4.104 22 C -0.112 4.112 23 C 0.048 3.952 24 N -0.544 5.544 25 C 0.482 3.518 26 F -0.174 7.174 27 F -0.181 7.181 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.020 0.980 32 H 0.087 0.913 33 H -0.002 1.002 34 H 0.018 0.982 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.362 -4.351 -17.286 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 N -0.233 5.233 4 C 0.035 3.965 5 C -0.539 4.539 6 H 0.109 0.891 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.695 3.305 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.035 3.965 14 H 0.112 0.888 15 C -0.236 4.236 16 C 0.071 3.929 17 N -0.181 5.181 18 C -0.056 4.056 19 C -0.081 4.081 20 C -0.147 4.147 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.057 4.057 24 N -0.246 5.246 25 C 0.346 3.654 26 F -0.155 7.155 27 F -0.163 7.163 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.105 0.895 33 H 0.016 0.984 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.451 -4.474 -17.048 22.792 hybrid contribution 1.694 0.550 1.208 2.152 sum 16.145 -3.924 -15.840 22.955 Atomic orbital electron populations 1.21894 0.94765 0.98747 1.04540 1.22218 0.96955 0.88058 0.99945 1.62023 1.13351 1.19307 1.28662 1.20338 0.99042 0.93475 0.83603 1.21126 0.92991 1.40972 0.98778 0.89132 1.24879 0.94963 0.95350 0.98125 1.69882 1.16119 1.44368 1.23555 0.86976 0.82283 0.78892 0.82300 1.20280 1.21244 1.19256 1.20313 0.93078 0.99740 0.83324 0.88841 1.22463 0.99569 1.00100 1.01511 1.24001 0.87280 0.87422 0.94194 1.70518 1.22788 1.21532 1.03268 1.19268 0.97533 0.96663 0.92175 1.20080 0.99372 0.98856 0.89787 1.20658 0.98642 0.98766 0.96650 1.20835 0.97747 0.95886 0.97897 1.19908 1.02584 1.02079 0.88734 1.18744 1.02268 0.99019 0.85693 1.46497 1.39330 1.31297 1.07486 1.21114 0.77729 0.76529 0.90031 1.93183 1.79300 1.56929 1.86074 1.93126 1.60727 1.89509 1.72923 0.89517 0.93050 0.94994 0.96160 0.89517 0.98411 0.96370 0.92747 0.92589 0.90924 0.91070 0.85040 0.85287 0.85224 0.86161 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.82 37.16 0.33 -2.70 16 2 C 0.06 1.14 4.06 -3.83 -0.02 1.12 16 3 N -0.51 -10.99 4.32 -229.47 -0.99 -11.98 16 4 C 0.16 3.89 3.37 -4.98 -0.02 3.87 16 5 C -0.50 -14.05 7.67 -34.44 -0.26 -14.32 16 6 H 0.09 2.78 6.58 -52.49 -0.35 2.43 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 9 Si 0.87 21.36 27.58 -169.99 -4.69 16.68 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.32 6.39 56.52 0.36 -5.95 16 13 C 0.15 2.66 2.51 -68.87 -0.17 2.49 16 14 H 0.09 1.69 6.24 -51.93 -0.32 1.37 16 15 C -0.18 -2.79 8.44 37.16 0.31 -2.47 16 16 C 0.34 5.78 6.59 -154.82 -1.02 4.76 16 17 N -0.46 -8.25 8.67 -8.23 -0.07 -8.32 16 18 C 0.06 0.92 7.23 -84.70 -0.61 0.31 16 19 C -0.06 -0.76 10.05 -39.61 -0.40 -1.15 16 20 C -0.13 -1.19 9.96 -39.97 -0.40 -1.59 16 21 C -0.10 -0.90 10.03 -39.52 -0.40 -1.30 16 22 C -0.11 -1.11 9.89 -39.50 -0.39 -1.50 16 23 C 0.05 0.65 6.87 -83.99 -0.58 0.07 16 24 N -0.54 -7.74 3.06 -116.88 -0.36 -8.10 16 25 C 0.48 5.34 5.60 59.85 0.34 5.67 16 26 F -0.17 -2.36 16.55 2.25 0.04 -2.32 16 27 F -0.18 -2.11 17.39 2.25 0.04 -2.07 16 28 H 0.09 2.12 5.71 -51.93 -0.30 1.82 16 29 H 0.05 1.15 8.13 -51.93 -0.42 0.72 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.41 7.11 -51.93 -0.37 0.04 16 32 H 0.09 1.68 5.07 -51.93 -0.26 1.42 16 33 H 0.00 -0.04 6.03 -51.93 -0.31 -0.36 16 34 H 0.02 0.44 7.29 -51.93 -0.38 0.06 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.16 7.50 -51.93 -0.39 0.77 16 38 H 0.07 1.13 6.55 -51.93 -0.34 0.79 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.81 7.76 -52.49 -0.41 0.40 16 43 H 0.15 0.93 7.62 -51.93 -0.40 0.54 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -32.92 349.06 -8.92 -41.84 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.53 Total: 0.59 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.38 Total: -4.88 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.65 Total: -55.09 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.08 Total: -4.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.69 Total: 16.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.92 -8.92 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.564 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds