Wall clock time and date at job start Tue Mar 31 2020 14:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47270 * 2 1 4 4 C 1.46899 * 110.99821 * 76.78271 * 3 2 1 5 5 C 1.50700 * 109.47223 * 282.08445 * 4 3 2 6 6 H 1.07997 * 119.99780 * 354.68545 * 5 4 3 7 7 C 1.37875 * 120.00146 * 174.68318 * 5 4 3 8 8 N 1.31510 * 120.00267 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99884 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46890 * 90.00501 * 9 7 5 11 11 H 1.48499 * 109.47055 * 209.99977 * 9 7 5 12 12 H 1.48492 * 109.47271 * 330.00285 * 9 7 5 13 13 C 1.46902 * 111.00348 * 200.73742 * 3 2 1 14 14 H 1.09006 * 109.47160 * 192.24612 * 13 3 2 15 15 C 1.53000 * 109.46729 * 312.24327 * 13 3 2 16 16 C 1.50695 * 109.47157 * 72.24301 * 13 3 2 17 17 N 1.30118 * 124.94910 * 317.48756 * 16 13 3 18 18 C 1.35783 * 109.63831 * 179.89296 * 17 16 13 19 19 C 1.39744 * 133.59508 * 180.13060 * 18 17 16 20 20 C 1.36602 * 119.88643 * 180.29496 * 19 18 17 21 21 C 1.38781 * 120.66808 * 359.96122 * 20 19 18 22 22 C 1.37850 * 120.45058 * 0.02562 * 21 20 19 23 23 C 1.38839 * 119.69268 * 0.02562 * 22 21 20 24 24 N 1.36037 * 124.95218 * 137.78732 * 16 13 3 25 25 C 1.46502 * 126.34886 * 359.94698 * 24 16 13 26 26 F 1.39901 * 109.46967 * 299.99867 * 25 24 16 27 27 F 1.39901 * 109.46809 * 59.99603 * 25 24 16 28 28 H 1.08999 * 109.47041 * 292.70275 * 1 2 3 29 29 H 1.09002 * 109.47307 * 52.70766 * 1 2 3 30 30 H 1.08998 * 109.46918 * 172.70887 * 1 2 3 31 31 H 1.09003 * 109.47306 * 120.00320 * 2 1 3 32 32 H 1.09001 * 109.46975 * 240.00132 * 2 1 3 33 33 H 1.09000 * 109.47071 * 42.08710 * 4 3 2 34 34 H 1.09005 * 109.47290 * 162.08607 * 4 3 2 35 35 H 0.97006 * 120.00662 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46608 * 180.02562 * 15 13 3 37 37 H 1.09003 * 109.47418 * 299.99567 * 15 13 3 38 38 H 1.08995 * 109.47408 * 60.00534 * 15 13 3 39 39 H 1.07997 * 120.05887 * 0.27614 * 19 18 17 40 40 H 1.07997 * 119.67034 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.77759 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.15931 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.47171 * 179.97438 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8995 1.9857 1.3351 5 6 0.4677 2.3884 1.5778 6 1 -0.2611 2.2948 0.7863 7 6 0.0882 2.8762 2.8102 8 7 -1.1614 3.2272 3.0222 9 14 1.3486 3.0374 4.1795 10 1 1.9771 4.3815 4.1179 11 1 0.6776 2.8645 5.4928 12 1 2.3931 1.9946 4.0161 13 6 3.4044 1.4538 -0.4856 14 1 3.8148 2.4413 -0.2744 15 6 4.2462 0.3897 0.2215 16 6 3.4283 1.2073 -1.9721 17 7 2.7352 0.2940 -2.5874 18 6 2.9911 0.3473 -3.9198 19 6 2.5306 -0.3817 -5.0194 20 6 2.9907 -0.0883 -6.2717 21 6 3.9134 0.9299 -6.4663 22 6 4.3814 1.6624 -5.3964 23 6 3.9258 1.3778 -4.1161 24 7 4.1820 1.9032 -2.8655 25 6 5.0963 3.0057 -2.5575 26 9 4.3832 4.0494 -1.9581 27 9 6.0900 2.5563 -1.6811 28 1 -0.3633 0.3966 0.9480 29 1 -0.3634 0.6226 -0.8176 30 1 -0.3633 -1.0193 -0.1304 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.2057 1.2604 2.0889 34 1 2.5398 2.8658 1.3965 35 1 -1.4286 3.5700 3.8894 36 1 5.2738 0.4411 -0.1385 37 1 4.2290 0.5680 1.2967 38 1 3.8359 -0.5977 0.0103 39 1 1.8123 -1.1760 -4.8795 40 1 2.6327 -0.6542 -7.1190 41 1 4.2672 1.1500 -7.4627 42 1 5.0997 2.4535 -5.5531 43 1 5.5583 3.3625 -3.4780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:38 Heat of formation + Delta-G solvation = -20.035729 kcal Electronic energy + Delta-G solvation = -28502.730862 eV Core-core repulsion = 24412.546939 eV Total energy + Delta-G solvation = -4090.183924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.38687 -48.47173 -43.26121 -39.60156 -38.08578 -35.03775 -34.76398 -33.13688 -31.28318 -31.22826 -29.82553 -28.48959 -27.21606 -25.60506 -24.18186 -23.23196 -23.00967 -21.88434 -20.68212 -19.40383 -19.08118 -18.89323 -18.68855 -17.81180 -16.86488 -16.56719 -16.15584 -16.08505 -16.04866 -15.73723 -15.38219 -15.25797 -14.94646 -14.80615 -14.75223 -14.53859 -14.47079 -14.04613 -13.49032 -13.43490 -13.32952 -12.94936 -12.88000 -12.74582 -12.69781 -12.65334 -12.30967 -12.14804 -12.09124 -11.94054 -11.83881 -11.63237 -11.25047 -10.78345 -10.58887 -9.46060 -9.20746 -9.04413 -8.21929 -6.22358 -0.10159 0.46351 0.91411 1.35108 1.36312 1.45935 1.61256 2.36894 2.41986 2.86297 2.94248 3.01728 3.09567 3.10747 3.30795 3.54946 3.83225 3.97169 3.97913 4.13151 4.38595 4.38986 4.39415 4.47831 4.56937 4.59036 4.62637 4.77216 4.81355 4.87627 4.99260 5.04384 5.07680 5.11406 5.30593 5.41673 5.53424 5.56484 5.57028 5.68240 5.73347 5.94714 6.04947 6.36153 6.62754 6.80302 6.83436 7.37853 8.94000 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.004250 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.889188 B = 6587.359359 C = 7484.716735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.064 3.936 3 N -0.529 5.529 4 C 0.173 3.827 5 C -0.502 4.502 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.937 3.063 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.249 1.249 13 C 0.150 3.850 14 H 0.089 0.911 15 C -0.167 4.167 16 C 0.307 3.693 17 N -0.494 5.494 18 C 0.013 3.987 19 C -0.084 4.084 20 C -0.117 4.117 21 C -0.090 4.090 22 C -0.113 4.113 23 C 0.041 3.959 24 N -0.544 5.544 25 C 0.475 3.525 26 F -0.193 7.193 27 F -0.186 7.186 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.099 0.901 33 H 0.001 0.999 34 H 0.022 0.978 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.161 0.839 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.621 -4.428 -19.662 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.063 4.063 3 N -0.253 5.253 4 C 0.047 3.953 5 C -0.540 4.540 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.761 3.239 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.172 1.172 13 C 0.039 3.961 14 H 0.107 0.893 15 C -0.226 4.226 16 C 0.041 3.959 17 N -0.212 5.212 18 C -0.102 4.102 19 C -0.103 4.103 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.134 4.134 23 C -0.064 4.064 24 N -0.246 5.246 25 C 0.340 3.660 26 F -0.175 7.175 27 F -0.167 7.167 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.117 0.883 33 H 0.019 0.981 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.179 0.821 41 H 0.190 0.810 42 H 0.177 0.823 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 17.740 -4.555 -19.451 26.717 hybrid contribution 0.622 0.526 1.666 1.855 sum 18.362 -4.029 -17.785 25.878 Atomic orbital electron populations 1.21740 0.95988 0.99576 1.01538 1.22157 0.95746 0.87836 1.00588 1.61828 1.16551 1.19858 1.27097 1.20066 0.96255 0.93716 0.85306 1.21299 0.94374 1.40502 0.97834 0.93352 1.25746 0.97026 0.95030 1.00964 1.70044 1.18528 1.45977 1.24431 0.85868 0.79835 0.79691 0.78515 1.19266 1.20949 1.17240 1.20226 0.91003 1.00244 0.84648 0.89309 1.22360 1.00261 0.99036 1.00983 1.23572 0.89383 0.89044 0.93929 1.70303 1.23408 1.22326 1.05142 1.19708 0.99753 0.98993 0.91780 1.20324 1.00254 0.99288 0.90448 1.21103 0.97728 0.98680 0.96207 1.21416 0.95930 0.94125 0.99437 1.20447 1.02832 1.02960 0.87138 1.19142 1.02145 0.98568 0.86533 1.46578 1.39248 1.31517 1.07281 1.21990 0.77047 0.75307 0.91666 1.93142 1.79927 1.57721 1.86664 1.93110 1.60625 1.89532 1.73481 0.93095 0.95104 0.92331 0.95798 0.88320 0.98132 0.95984 0.92646 0.90588 0.91234 0.91429 0.85264 0.82140 0.81038 0.82323 0.77305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.82 71.98 0.63 -5.24 16 2 C 0.06 2.68 4.06 86.30 0.35 3.03 16 3 N -0.53 -23.48 4.32 -879.92 -3.80 -27.28 16 4 C 0.17 8.50 3.37 85.56 0.29 8.78 16 5 C -0.50 -29.39 7.67 25.60 0.20 -29.19 16 6 H 0.05 3.18 6.58 -2.91 -0.02 3.16 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 9 Si 0.94 44.47 27.58 68.60 1.89 46.36 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.25 -10.95 6.39 99.48 0.64 -10.31 16 13 C 0.15 5.46 2.51 44.17 0.11 5.57 16 14 H 0.09 3.24 6.24 -2.38 -0.01 3.22 16 15 C -0.17 -5.17 8.44 71.98 0.61 -4.56 16 16 C 0.31 10.60 6.59 137.92 0.91 11.51 16 17 N -0.49 -17.93 8.67 -179.96 -1.56 -19.49 16 18 C 0.01 0.41 7.23 39.45 0.29 0.69 16 19 C -0.08 -1.98 10.05 22.25 0.22 -1.76 16 20 C -0.12 -1.81 9.96 22.02 0.22 -1.59 16 21 C -0.09 -1.11 10.03 22.31 0.22 -0.89 16 22 C -0.11 -1.75 9.89 22.32 0.22 -1.53 16 23 C 0.04 1.02 6.87 38.86 0.27 1.29 16 24 N -0.54 -14.83 3.06 -523.69 -1.60 -16.43 16 25 C 0.47 9.49 5.60 127.77 0.72 10.20 16 26 F -0.19 -5.08 16.55 44.97 0.74 -4.34 16 27 F -0.19 -3.97 17.39 44.97 0.78 -3.19 16 28 H 0.05 2.64 5.71 -2.39 -0.01 2.62 16 29 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.02 0.97 7.11 -2.39 -0.02 0.96 16 32 H 0.10 3.94 5.07 -2.39 -0.01 3.93 16 33 H 0.00 0.05 6.03 -2.39 -0.01 0.03 16 34 H 0.02 1.07 7.29 -2.38 -0.02 1.05 16 35 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 36 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 2.16 7.50 -2.39 -0.02 2.14 16 38 H 0.07 2.12 6.55 -2.39 -0.02 2.11 16 39 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 42 H 0.16 1.18 7.76 -2.91 -0.02 1.16 16 43 H 0.21 1.66 7.62 -2.39 -0.02 1.65 16 Total: -1.00 -77.11 349.06 3.44 -73.67 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.97 Total: 13.20 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.72 Total: -2.67 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -6.66 Total: -123.04 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 1.53 Total: -7.53 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.89 Total: 46.36 kcal Total: -77.11 3.44 -73.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.638 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds