Wall clock time and date at job start Tue Mar 31 2020 14:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.46976 * 2 1 4 4 C 1.46899 * 110.99949 * 297.64922 * 3 2 1 5 5 C 1.50701 * 109.47114 * 294.87402 * 4 3 2 6 6 H 1.08004 * 119.99809 * 355.54464 * 5 4 3 7 7 C 1.37877 * 120.00102 * 175.53873 * 5 4 3 8 8 N 1.31513 * 120.00021 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47094 * 120.00009 * 9 7 5 12 12 H 1.48504 * 109.46710 * 239.99757 * 9 7 5 13 13 C 1.46903 * 111.00219 * 61.60519 * 3 2 1 14 14 H 1.09003 * 109.46929 * 296.04492 * 13 3 2 15 15 C 1.52999 * 109.47354 * 176.04856 * 13 3 2 16 16 C 1.50699 * 109.47217 * 56.04267 * 13 3 2 17 17 N 1.30110 * 124.94641 * 45.02866 * 16 13 3 18 18 C 1.35789 * 109.64119 * 179.97438 * 17 16 13 19 19 C 1.39744 * 133.59864 * 180.02562 * 18 17 16 20 20 C 1.36594 * 119.88439 * 180.25630 * 19 18 17 21 21 C 1.38778 * 120.67043 * 359.48170 * 20 19 18 22 22 C 1.37858 * 120.44997 * 0.50110 * 21 20 19 23 23 C 1.38830 * 119.69074 * 359.76347 * 22 21 20 24 24 N 1.36035 * 124.95324 * 225.00066 * 16 13 3 25 25 C 1.46505 * 126.34386 * 359.97438 * 24 16 13 26 26 F 1.39902 * 109.46541 * 210.01784 * 25 24 16 27 27 F 1.39899 * 109.47163 * 330.01394 * 25 24 16 28 28 H 1.08995 * 109.47568 * 302.07411 * 1 2 3 29 29 H 1.08996 * 109.47227 * 62.07669 * 1 2 3 30 30 H 1.09005 * 109.46854 * 182.07280 * 1 2 3 31 31 H 1.08998 * 109.47295 * 239.99469 * 2 1 3 32 32 H 1.09004 * 109.47084 * 119.99496 * 2 1 3 33 33 H 1.08994 * 109.47108 * 54.87569 * 4 3 2 34 34 H 1.08998 * 109.47024 * 174.87928 * 4 3 2 35 35 H 0.96998 * 120.00433 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47015 * 59.99216 * 15 13 3 37 37 H 1.08989 * 109.47511 * 179.97438 * 15 13 3 38 38 H 1.09002 * 109.47141 * 300.00139 * 15 13 3 39 39 H 1.07996 * 120.05293 * 359.97438 * 19 18 17 40 40 H 1.07999 * 119.66535 * 179.70008 * 20 19 18 41 41 H 1.07997 * 119.77815 * 180.26761 * 21 20 19 42 42 H 1.07996 * 120.15391 * 179.74478 * 22 21 20 43 43 H 1.09001 * 109.46792 * 90.01937 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5950 2.0934 -1.2148 5 6 2.2467 1.4622 -2.4181 6 1 2.9650 0.6663 -2.2878 7 6 1.9259 1.9007 -3.6853 8 7 1.0507 2.8695 -3.8440 9 14 2.7331 1.1178 -5.1769 10 1 3.6730 0.0578 -4.7317 11 1 1.6894 0.5205 -6.0482 12 1 3.4791 2.1531 -5.9365 13 6 1.5802 2.0988 1.2064 14 1 0.4928 2.1745 1.2080 15 6 2.1891 3.5023 1.2189 16 6 2.0329 1.3439 2.4296 17 7 3.2208 0.8403 2.5974 18 6 3.2904 0.2285 3.8077 19 6 4.3025 -0.4585 4.4834 20 6 4.0609 -0.9801 5.7225 21 6 2.8205 -0.8263 6.3257 22 6 1.8074 -0.1521 5.6781 23 6 2.0329 0.3802 4.4158 24 7 1.2593 1.0901 3.5195 25 6 -0.1358 1.4959 3.7075 26 9 -0.3844 1.6930 5.0700 27 9 -0.3725 2.6872 3.0132 28 1 -0.3634 0.5457 0.8707 29 1 -0.3633 0.4812 -0.9080 30 1 -0.3633 -1.0270 0.0372 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.5114 2.0292 -1.3129 34 1 1.8924 3.1399 -1.1478 35 1 0.8252 3.1783 -4.7354 36 1 1.8617 4.0482 0.3341 37 1 1.8628 4.0321 2.1137 38 1 3.2765 3.4267 1.2173 39 1 5.2725 -0.5807 4.0247 40 1 4.8441 -1.5145 6.2395 41 1 2.6466 -1.2409 7.3077 42 1 0.8428 -0.0388 6.1502 43 1 -0.7954 0.7161 3.3267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:42 Heat of formation + Delta-G solvation = -1.728691 kcal Electronic energy + Delta-G solvation = -28578.228099 eV Core-core repulsion = 24488.838028 eV Total energy + Delta-G solvation = -4089.390071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.61550 -47.73389 -42.20213 -38.16343 -36.94623 -33.84314 -32.76761 -31.80228 -30.48027 -29.42444 -28.28136 -26.40186 -26.24199 -24.13700 -22.98492 -22.21440 -21.90212 -20.84948 -19.11862 -18.48541 -18.21860 -17.67198 -16.84007 -16.35832 -15.56066 -15.42402 -15.16851 -15.10043 -14.70941 -14.48359 -14.16883 -14.10430 -13.91698 -13.79393 -13.57921 -13.11374 -12.72335 -12.37074 -12.18412 -12.11349 -11.92680 -11.86593 -11.59398 -11.43784 -11.25434 -11.00479 -10.89373 -10.71256 -10.62410 -10.33960 -10.08465 -9.89328 -9.75548 -9.19270 -8.49629 -8.42758 -8.13913 -7.24211 -6.03407 -4.03394 0.87735 1.36207 1.84553 2.72788 3.22409 3.31552 3.39539 3.45121 3.80929 3.82686 4.09194 4.18118 4.21875 4.43944 4.79883 4.85455 4.90542 5.28103 5.31217 5.33324 5.36482 5.51694 5.57673 5.63200 5.68227 5.87875 5.95499 5.97936 6.07781 6.23517 6.29854 6.35382 6.41344 6.43998 6.61398 6.65807 6.74253 6.83190 6.88931 7.25586 7.35707 7.78375 7.94658 8.07415 8.14490 8.50947 9.04731 9.60502 11.07383 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.003880 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.486142 B = 7214.627456 C = 8075.280236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.060 3.940 3 N -0.512 5.512 4 C 0.186 3.814 5 C -0.502 4.502 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.148 3.852 14 H 0.060 0.940 15 C -0.138 4.138 16 C 0.327 3.673 17 N -0.450 5.450 18 C 0.056 3.944 19 C -0.063 4.063 20 C -0.127 4.127 21 C -0.108 4.108 22 C -0.106 4.106 23 C 0.046 3.954 24 N -0.551 5.551 25 C 0.488 3.512 26 F -0.182 7.182 27 F -0.172 7.172 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.002 0.998 34 H 0.037 0.963 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 -5.459 19.786 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.068 4.068 3 N -0.237 5.237 4 C 0.062 3.938 5 C -0.541 4.541 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.210 1.210 13 C 0.037 3.963 14 H 0.077 0.923 15 C -0.196 4.196 16 C 0.062 3.938 17 N -0.167 5.167 18 C -0.061 4.061 19 C -0.083 4.083 20 C -0.147 4.147 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.060 4.060 24 N -0.254 5.254 25 C 0.353 3.647 26 F -0.164 7.164 27 F -0.153 7.153 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.369 -5.257 19.118 19.875 hybrid contribution -1.382 -0.190 -0.191 1.408 sum -2.751 -5.447 18.927 19.886 Atomic orbital electron populations 1.22416 0.99720 1.00829 1.01649 1.22015 0.91546 0.91339 1.01923 1.62338 1.58956 1.01505 1.00864 1.19927 0.94633 0.94478 0.84744 1.21160 1.23842 1.19301 0.89750 0.91695 1.24950 0.95297 0.95258 0.99002 1.69957 1.33392 1.27997 1.22560 0.86470 0.79220 0.79303 0.82632 1.19612 1.21227 1.21047 1.20334 0.97388 0.92997 0.85552 0.92295 1.21841 1.02568 0.93217 1.01950 1.24031 0.85329 0.95687 0.88717 1.70668 1.16900 1.13954 1.15165 1.19289 0.92821 1.01711 0.92324 1.20065 0.97790 0.96366 0.94058 1.20648 0.97450 1.01397 0.95253 1.20853 0.92812 0.99285 0.99782 1.20046 1.00424 1.00576 0.91676 1.18757 0.92595 1.00803 0.93828 1.46745 1.11881 1.48991 1.17789 1.21469 0.83498 0.84970 0.74765 1.93085 1.93642 1.95868 1.33766 1.93132 1.93754 1.49924 1.78538 0.95042 0.90716 0.93231 0.89355 0.93130 0.98002 0.94562 0.93025 0.90081 0.93326 0.90879 0.85075 0.85379 0.85349 0.85869 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.24 37.16 0.34 -2.88 16 2 C 0.06 1.18 5.57 -3.83 -0.02 1.16 16 3 N -0.51 -10.86 4.55 -229.48 -1.04 -11.90 16 4 C 0.19 4.60 4.31 -4.98 -0.02 4.58 16 5 C -0.50 -13.66 8.38 -34.44 -0.29 -13.95 16 6 H 0.06 1.79 7.23 -52.48 -0.38 1.41 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 9 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.15 2.69 1.41 -68.86 -0.10 2.59 16 14 H 0.06 1.03 4.44 -51.93 -0.23 0.80 16 15 C -0.14 -2.42 8.97 37.16 0.33 -2.08 16 16 C 0.33 5.62 5.01 -154.83 -0.78 4.85 16 17 N -0.45 -8.35 10.91 -8.23 -0.09 -8.44 16 18 C 0.06 0.89 7.23 -84.70 -0.61 0.28 16 19 C -0.06 -0.82 10.05 -39.61 -0.40 -1.22 16 20 C -0.13 -1.30 9.96 -39.98 -0.40 -1.69 16 21 C -0.11 -1.05 10.03 -39.52 -0.40 -1.45 16 22 C -0.11 -1.22 9.61 -39.50 -0.38 -1.60 16 23 C 0.05 0.66 6.69 -83.99 -0.56 0.10 16 24 N -0.55 -7.99 3.19 -116.88 -0.37 -8.36 16 25 C 0.49 5.56 6.34 59.85 0.38 5.94 16 26 F -0.18 -2.00 15.78 2.25 0.04 -1.96 16 27 F -0.17 -2.21 14.72 2.25 0.03 -2.18 16 28 H 0.03 0.48 6.42 -51.93 -0.33 0.14 16 29 H 0.07 1.47 6.45 -51.93 -0.34 1.14 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.89 6.82 -51.93 -0.35 1.53 16 32 H 0.05 0.97 6.67 -51.93 -0.35 0.62 16 33 H 0.00 0.06 6.16 -51.93 -0.32 -0.26 16 34 H 0.04 0.95 5.87 -51.93 -0.30 0.64 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.08 1.49 6.22 -51.93 -0.32 1.16 16 37 H 0.05 0.75 8.14 -51.94 -0.42 0.33 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.12 1.19 7.13 -52.49 -0.37 0.82 16 43 H 0.15 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -31.01 349.98 -8.83 -39.85 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.39 Total: 0.45 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.99 Total: -3.94 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.77 Total: -53.86 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.07 Total: -4.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.01 -8.83 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.120 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds