Wall clock time and date at job start Tue Mar 31 2020 13:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 N 1.46501 * 109.46940 * 179.97438 * 3 2 1 5 5 C 1.37315 * 125.82582 * 270.20404 * 4 3 2 6 6 C 1.50704 * 125.58875 * 0.03799 * 5 4 3 7 7 N 1.29416 * 108.83276 * 180.27323 * 5 4 3 8 8 N 1.40173 * 108.13496 * 359.74838 * 7 5 4 9 9 C 1.46495 * 126.35581 * 179.97438 * 8 7 5 10 10 N 1.46896 * 109.47125 * 269.99365 * 9 8 7 11 11 C 1.46908 * 111.00237 * 190.00080 * 10 9 8 12 12 C 1.50701 * 109.47302 * 164.71538 * 11 10 9 13 13 H 1.08004 * 119.99550 * 1.30309 * 12 11 10 14 14 C 1.37871 * 119.99822 * 181.29646 * 12 11 10 15 15 N 1.31517 * 119.99661 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00283 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47058 * 89.99756 * 16 14 12 18 18 H 1.48502 * 109.47069 * 209.99738 * 16 14 12 19 19 H 1.48506 * 109.46897 * 329.99962 * 16 14 12 20 20 C 1.46907 * 110.99867 * 66.04768 * 10 9 8 21 21 C 1.52996 * 109.47128 * 61.35355 * 20 10 9 22 22 C 1.47195 * 109.47226 * 179.46464 * 21 20 10 23 23 N 9.28187 * 150.41523 * 28.42065 * 2 1 3 24 24 C 1.34813 * 125.82736 * 90.02998 * 4 3 2 25 25 S 1.71195 * 126.30428 * 359.97438 * 24 4 3 26 26 H 1.09004 * 109.46911 * 59.99762 * 1 2 3 27 27 H 1.08995 * 109.47620 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47220 * 300.00115 * 1 2 3 29 29 H 1.08999 * 109.46921 * 239.99677 * 2 1 3 30 30 H 1.09004 * 109.46911 * 120.00238 * 2 1 3 31 31 H 1.09006 * 109.47049 * 59.99779 * 3 2 1 32 32 H 1.09001 * 109.47172 * 300.00514 * 3 2 1 33 33 H 1.08992 * 109.47208 * 270.30253 * 6 5 4 34 34 H 1.09003 * 109.46410 * 30.30079 * 6 5 4 35 35 H 1.09003 * 109.47243 * 150.29669 * 6 5 4 36 36 H 1.08997 * 109.47624 * 29.99525 * 9 8 7 37 37 H 1.09002 * 109.47291 * 149.99583 * 9 8 7 38 38 H 1.09002 * 109.46967 * 284.72026 * 11 10 9 39 39 H 1.08996 * 109.46913 * 44.71625 * 11 10 9 40 40 H 0.97006 * 119.99508 * 180.02562 * 15 14 12 41 41 H 1.08995 * 109.46843 * 181.35239 * 20 10 9 42 42 H 1.08996 * 109.46861 * 301.35175 * 20 10 9 43 43 H 1.09004 * 109.47065 * 299.46638 * 21 20 10 44 44 H 1.08999 * 109.47343 * 59.46701 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.3083 1.4385 1.1143 6 6 3.8274 1.4328 2.5425 7 7 5.5461 1.4455 0.7366 8 7 5.5747 1.4485 -0.6648 9 6 6.7719 1.4568 -1.5090 10 7 7.1643 2.8444 -1.7885 11 6 8.2109 2.8985 -2.8181 12 6 8.3234 4.3052 -3.3468 13 1 7.6962 5.0858 -2.9423 14 6 9.2269 4.5955 -4.3469 15 7 9.3254 5.8233 -4.8079 16 14 10.3113 3.2451 -5.0469 17 1 9.6233 2.6036 -6.1960 18 1 11.5975 3.8301 -5.5039 19 1 10.5751 2.2282 -3.9973 20 6 7.5972 3.5265 -0.5615 21 6 8.8175 2.8081 0.0179 22 6 9.2590 3.4991 1.2403 23 7 9.6017 4.0303 2.1810 24 6 4.2946 1.4427 -1.0921 25 16 3.7700 1.4427 -2.7217 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.7058 2.4590 2.8890 34 1 2.8708 0.9136 2.6016 35 1 4.5577 0.9215 3.1698 36 1 7.5846 0.9465 -0.9921 37 1 6.5588 0.9435 -2.4467 38 1 9.1638 2.5963 -2.3836 39 1 7.9532 2.2232 -3.6339 40 1 9.9609 6.0274 -5.5118 41 1 7.8592 4.5589 -0.7928 42 1 6.7869 3.5118 0.1674 43 1 8.5528 1.7783 0.2580 44 1 9.6246 2.8145 -0.7147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089649153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:07 Heat of formation + Delta-G solvation = 127.998039 kcal Electronic energy + Delta-G solvation = -25423.670883 eV Core-core repulsion = 21926.039323 eV Total energy + Delta-G solvation = -3497.631560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.76669 -38.36162 -36.57104 -35.99792 -33.92000 -32.86779 -32.54907 -30.83760 -29.61305 -27.94067 -27.04918 -25.45146 -23.87542 -22.57375 -22.37128 -21.17938 -20.20251 -18.12356 -17.60183 -16.96250 -16.72444 -16.58988 -15.95678 -15.38426 -15.30660 -14.67257 -14.52887 -14.23294 -14.03660 -13.97622 -13.64252 -13.40481 -13.26869 -12.86075 -12.63661 -12.51983 -12.38093 -12.28183 -12.01555 -11.96148 -11.79906 -11.54522 -11.44572 -11.17926 -11.08236 -10.85541 -10.76395 -10.62825 -10.53871 -10.18893 -10.03712 -9.44290 -8.61851 -7.83555 -7.47147 -7.30774 -6.09506 -4.08672 1.17675 1.41642 1.52791 2.36638 2.51489 2.97508 3.01031 3.25946 3.30582 3.34880 3.89777 4.07652 4.14208 4.34088 4.36465 4.43034 4.53748 4.73966 4.79324 4.87387 4.89669 5.05635 5.13087 5.19552 5.22157 5.26490 5.28937 5.34065 5.36943 5.51204 5.61907 5.62334 5.76721 5.84622 5.93571 6.07202 6.32610 6.40437 6.59130 6.67973 7.15459 7.33462 7.54235 7.67436 7.78305 8.52793 8.99512 9.49288 11.03375 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.004050 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.183719 B = 6912.288897 C = 8503.427011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.498 5.498 5 C 0.263 3.737 6 C -0.077 4.077 7 N -0.279 5.279 8 N -0.365 5.365 9 C 0.299 3.701 10 N -0.521 5.521 11 C 0.165 3.835 12 C -0.510 4.510 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.894 5.894 16 Si 0.871 3.129 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.070 3.930 21 C -0.073 4.073 22 C 0.226 3.774 23 N -0.453 5.453 24 C 0.475 3.525 25 S -0.571 6.571 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.003 0.997 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.155 -14.084 15.448 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.200 5.200 5 C -0.017 4.017 6 C -0.136 4.136 7 N -0.100 5.100 8 N -0.157 5.157 9 C 0.089 3.911 10 N -0.245 5.245 11 C 0.040 3.960 12 C -0.548 4.548 13 H 0.100 0.900 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.698 3.302 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.060 4.060 21 C -0.114 4.114 22 C -0.092 4.092 23 N -0.131 5.131 24 C 0.115 3.885 25 S -0.443 6.443 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.144 0.856 38 H 0.021 0.979 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.163 -12.911 15.791 24.276 hybrid contribution 0.809 -1.141 -0.023 1.399 sum -12.354 -14.052 15.768 24.469 Atomic orbital electron populations 1.21662 0.93894 1.02535 1.02418 1.21881 0.97176 0.95243 1.03487 1.22096 0.73031 0.99578 1.05991 1.46278 1.09308 1.60527 1.03912 1.24725 0.86236 0.97808 0.92900 1.20494 1.02917 1.05229 0.84954 1.77160 1.17115 1.23467 0.92272 1.49558 1.06100 1.57947 1.02143 1.22478 0.81337 0.93799 0.93468 1.62071 1.42615 1.11149 1.08639 1.20297 0.86591 1.00119 0.89025 1.20856 1.21327 0.92618 1.19993 0.89978 1.24854 0.96796 0.95259 0.96084 1.69880 1.36461 1.18713 1.28210 0.86936 0.80501 0.82532 0.80211 1.19846 1.21207 1.19173 1.22117 0.92829 1.00335 0.90705 1.20155 1.02561 0.99241 0.89485 1.28893 0.92787 0.93388 0.94107 1.81039 1.09758 1.09821 1.12442 1.23854 0.83640 0.87017 0.93947 1.93454 1.83099 1.72807 0.94948 0.91757 0.91949 0.92476 0.90196 0.91715 0.88510 0.86716 0.88384 0.89114 0.88009 0.90813 0.85578 0.97938 0.94650 0.92504 0.88061 0.91606 0.88254 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.14 -0.92 6.26 -26.73 -0.17 -1.08 16 3 C 0.11 0.88 5.49 -4.04 -0.02 0.86 16 4 N -0.50 -5.48 2.74 -114.59 -0.31 -5.79 16 5 C 0.26 2.52 7.98 -154.19 -1.23 1.29 16 6 C -0.08 -0.34 9.97 36.01 0.36 0.02 16 7 N -0.28 -3.44 11.54 32.97 0.38 -3.06 16 8 N -0.36 -5.35 3.34 -65.00 -0.22 -5.57 16 9 C 0.30 4.56 5.72 -63.33 -0.36 4.20 16 10 N -0.52 -9.59 4.80 -239.98 -1.15 -10.74 16 11 C 0.16 3.47 3.66 -4.97 -0.02 3.45 16 12 C -0.51 -13.45 9.12 -34.44 -0.31 -13.77 16 13 H 0.08 2.43 7.68 -52.48 -0.40 2.02 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 16 Si 0.87 20.15 27.44 -169.99 -4.66 15.49 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -5.65 6.58 56.52 0.37 -5.28 16 20 C 0.07 1.17 5.04 -3.82 -0.02 1.15 16 21 C -0.07 -1.01 5.06 -29.52 -0.15 -1.16 16 22 C 0.23 3.51 15.42 -20.85 -0.32 3.19 16 23 N -0.45 -7.94 18.52 42.05 0.78 -7.16 16 24 C 0.47 7.24 7.86 -86.73 -0.68 6.55 16 25 S -0.57 -10.83 29.61 -107.50 -3.18 -14.02 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.44 7.67 -51.93 -0.40 0.04 16 32 H 0.11 1.09 7.64 -51.93 -0.40 0.70 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.19 7.73 -51.93 -0.40 -0.21 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.93 6.05 -51.93 -0.31 0.62 16 37 H 0.13 2.02 7.42 -51.93 -0.39 1.64 16 38 H 0.00 0.06 5.02 -51.93 -0.26 -0.20 16 39 H 0.04 0.76 7.18 -51.93 -0.37 0.39 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.10 1.95 7.15 -51.93 -0.37 1.58 16 42 H 0.07 1.07 6.78 -51.93 -0.35 0.71 16 43 H 0.10 1.16 6.33 -51.93 -0.33 0.83 16 44 H 0.12 1.71 6.21 -51.93 -0.32 1.39 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -34.96 377.88 -10.99 -45.95 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.43 Total: -1.22 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -2.66 Total: 6.24 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.25 Total: -58.14 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.66 Total: 15.49 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -3.18 Total: -14.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.96 -10.99 -45.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089649153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.953 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds