Wall clock time and date at job start Tue Mar 31 2020 14:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.05995 * 2 1 4 4 C 1.53995 * 109.91892 * 238.80104 * 2 1 3 5 5 H 1.08996 * 110.31096 * 120.49679 * 4 2 1 6 6 C 1.50700 * 110.39012 * 358.37645 * 4 2 1 7 7 O 1.20828 * 119.99955 * 275.07369 * 6 4 2 8 8 O 1.34227 * 120.00385 * 95.07486 * 6 4 2 9 9 C 1.54590 * 105.13804 * 239.41846 * 4 2 1 10 10 C 1.54935 * 102.92479 * 338.03994 * 9 4 2 11 11 N 1.47900 * 109.92039 * 121.20737 * 2 1 3 12 12 C 1.46906 * 110.99707 * 265.19700 * 11 2 1 13 13 C 1.50696 * 109.46865 * 176.55750 * 12 11 2 14 14 O 1.21285 * 120.00005 * 353.49643 * 13 12 11 15 15 N 1.34777 * 120.00146 * 173.49859 * 13 12 11 16 16 C 1.46504 * 120.00132 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47236 * 270.00187 * 16 15 13 18 18 H 1.08005 * 119.99982 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99963 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00193 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47130 * 270.00033 * 21 19 17 23 23 H 1.48496 * 109.47112 * 149.99620 * 21 19 17 24 24 H 1.48503 * 109.46714 * 29.99745 * 21 19 17 25 25 C 1.46505 * 119.99845 * 359.97438 * 15 13 12 26 26 C 1.52996 * 109.46822 * 269.99777 * 25 15 13 27 27 C 1.47203 * 109.47236 * 179.97438 * 26 25 15 28 28 N 6.95394 * 117.45505 * 41.63587 * 2 1 3 29 29 H 1.09004 * 109.47357 * 304.26667 * 1 2 3 30 30 H 1.08997 * 109.47604 * 64.27511 * 1 2 3 31 31 H 1.09005 * 109.46697 * 184.27634 * 1 2 3 32 32 H 0.96697 * 117.00430 * 179.97438 * 8 6 4 33 33 H 1.08998 * 110.72576 * 219.68204 * 9 4 2 34 34 H 1.09003 * 110.87797 * 96.47130 * 9 4 2 35 35 H 1.09002 * 110.66337 * 278.98177 * 10 9 4 36 36 H 1.08996 * 110.66867 * 155.84712 * 10 9 4 37 37 H 1.09001 * 109.47284 * 56.55797 * 12 11 2 38 38 H 1.09001 * 109.47221 * 296.55591 * 12 11 2 39 39 H 1.09001 * 109.46466 * 149.99831 * 16 15 13 40 40 H 1.09004 * 109.46989 * 30.00227 * 16 15 13 41 41 H 0.97001 * 119.99347 * 0.02562 * 20 19 17 42 42 H 1.08998 * 109.46933 * 29.99612 * 25 15 13 43 43 H 1.08996 * 109.47043 * 150.00287 * 25 15 13 44 44 H 1.09002 * 109.47710 * 300.00220 * 26 25 15 45 45 H 1.09007 * 109.47230 * 60.00116 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7500 -1.2384 5 1 2.6712 -0.0893 -1.8478 6 6 0.9060 -1.2891 -2.0514 7 8 0.4134 -2.3555 -1.7682 8 8 0.4300 -0.5848 -3.0902 9 6 2.9059 -1.9115 -0.6764 10 6 3.2682 -1.4184 0.7470 11 7 2.0339 -0.7205 1.1893 12 6 2.3212 0.2123 2.2872 13 6 2.7506 -0.5633 3.5058 14 8 2.6987 -1.7751 3.5028 15 7 3.1923 0.0895 4.5991 16 6 3.6092 -0.6645 5.7840 17 6 2.4246 -0.8670 6.6931 18 1 1.4578 -0.4731 6.4162 19 6 2.5751 -1.5543 7.8788 20 7 3.7524 -2.0336 8.2162 21 14 1.1068 -1.8048 9.0062 22 1 1.0176 -0.6718 9.9620 23 1 1.2708 -3.0749 9.7579 24 1 -0.1354 -1.8667 8.1947 25 6 3.2554 1.5532 4.6026 26 6 4.6253 2.0057 4.0933 27 6 4.6887 3.4763 4.0962 28 7 4.7361 4.6119 4.0998 29 1 -0.3634 0.5786 0.8493 30 1 -0.3634 0.4460 -0.9258 31 1 -0.3633 -1.0249 0.0766 32 1 -0.3073 -0.9716 -3.5820 33 1 3.8053 -2.0555 -1.2751 34 1 2.3242 -2.8321 -0.6292 35 1 4.1098 -0.7266 0.7119 36 1 3.4889 -2.2615 1.4017 37 1 1.4247 0.7871 2.5197 38 1 3.1203 0.8906 1.9881 39 1 4.3833 -0.1095 6.3139 40 1 4.0023 -1.6341 5.4779 41 1 4.5149 -1.9032 7.6310 42 1 2.4764 1.9520 3.9529 43 1 3.1056 1.9209 5.6177 44 1 5.4045 1.6068 4.7429 45 1 4.7752 1.6379 3.0781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092940201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:58 Heat of formation + Delta-G solvation = -90.825796 kcal Electronic energy + Delta-G solvation = -27991.335608 eV Core-core repulsion = 24009.169512 eV Total energy + Delta-G solvation = -3982.166096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08099 -39.66707 -38.31485 -36.92609 -36.30071 -35.33392 -33.31694 -32.55814 -31.63002 -30.88522 -28.20429 -26.60202 -25.36842 -24.05461 -23.45662 -22.74337 -21.25723 -19.94618 -18.83123 -18.29077 -17.70049 -17.01502 -16.90373 -16.62782 -16.44449 -15.74599 -15.38879 -14.99338 -14.69147 -14.62027 -14.24923 -13.76968 -13.72608 -13.40071 -13.17508 -13.11103 -12.78694 -12.56220 -12.53200 -12.38829 -12.14030 -12.12898 -11.83033 -11.77454 -11.49645 -11.40993 -11.34672 -11.20840 -11.11100 -10.93779 -10.85328 -10.63417 -10.60092 -10.12665 -9.23436 -9.11637 -8.46422 -8.41819 -7.80928 -6.42148 -4.14793 1.96096 2.61457 2.69834 2.73646 3.20941 3.35184 3.41832 3.48146 3.63009 3.78541 4.07959 4.23953 4.26702 4.51376 4.68761 4.81561 4.90690 4.98256 4.98474 5.03250 5.12641 5.13666 5.19590 5.31075 5.33339 5.35635 5.41709 5.50482 5.60133 5.69398 5.71891 5.94509 5.96961 6.04907 6.12167 6.26864 6.61050 6.75739 6.84513 7.04287 7.25195 7.46444 7.66445 7.97363 8.11161 8.38917 8.73944 8.89905 9.54371 10.95614 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.003560 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.974343 B = 7863.956502 C = 9416.757692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 H 0.067 0.933 4 C -0.091 4.091 5 H 0.107 0.893 6 C 0.492 3.508 7 O -0.503 6.503 8 O -0.520 6.520 9 C -0.115 4.115 10 C 0.038 3.962 11 N -0.488 5.488 12 C 0.026 3.974 13 C 0.509 3.491 14 O -0.511 6.511 15 N -0.596 5.596 16 C 0.237 3.763 17 C -0.607 4.607 18 H 0.053 0.947 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 1.072 2.928 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.288 1.288 25 C 0.118 3.882 26 C -0.050 4.050 27 C 0.215 3.785 28 N -0.442 5.442 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.408 0.592 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.023 0.977 40 H 0.036 0.964 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 6.828 -20.573 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.030 4.030 3 H 0.085 0.915 4 C -0.111 4.111 5 H 0.125 0.875 6 C 0.334 3.666 7 O -0.390 6.390 8 O -0.333 6.333 9 C -0.153 4.153 10 C -0.089 4.089 11 N -0.213 5.213 12 C -0.106 4.106 13 C 0.295 3.705 14 O -0.385 6.385 15 N -0.329 5.329 16 C 0.118 3.882 17 C -0.646 4.646 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.545 5.545 21 Si 0.900 3.100 22 H -0.215 1.215 23 H -0.209 1.209 24 H -0.215 1.215 25 C -0.008 4.008 26 C -0.091 4.091 27 C -0.103 4.103 28 N -0.119 5.119 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.267 0.733 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.134 0.866 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.757 6.668 -18.601 19.838 hybrid contribution 0.519 0.834 -2.013 2.240 sum -1.238 7.502 -20.614 21.971 Atomic orbital electron populations 1.22033 0.93575 1.03866 1.01825 1.22261 0.96950 0.95830 0.87944 0.91477 1.21968 0.93767 0.99870 0.95446 0.87516 1.23066 0.83425 0.82283 0.77824 1.90748 1.58127 1.22682 1.67394 1.84556 1.52087 1.53433 1.43189 1.22634 0.99072 0.97909 0.95638 1.23342 0.90419 0.99770 0.95360 1.64519 1.27707 1.24718 1.04364 1.22328 1.01695 0.94509 0.92025 1.20097 0.78383 0.88378 0.83658 1.90696 1.52036 1.13658 1.82083 1.48021 1.64406 1.04941 1.15487 1.19376 0.95941 0.91700 0.81219 1.22261 0.96089 1.39874 1.06397 0.92906 1.25768 1.02110 0.93079 0.97328 1.70796 1.00453 1.43409 1.39852 0.83495 0.74289 0.76832 0.75386 1.21484 1.20884 1.21453 1.21290 0.93491 0.82437 1.03601 1.19893 1.02510 0.81640 1.05075 1.29092 0.93176 0.95067 0.92955 1.81242 1.08644 1.12925 1.09106 0.91570 0.92172 0.90695 0.73302 0.90169 0.88498 0.93721 0.87525 0.88030 0.92352 0.95901 0.94588 0.92215 0.90656 0.88714 0.86591 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.37 37.16 0.31 -1.32 16 2 C 0.08 0.80 3.08 -66.65 -0.21 0.59 16 3 H 0.07 0.55 7.77 -51.93 -0.40 0.14 16 4 C -0.09 -0.83 3.48 -90.42 -0.31 -1.14 16 5 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 6 C 0.49 4.95 5.20 36.01 0.19 5.14 16 7 O -0.50 -6.82 15.72 -18.75 -0.29 -7.11 16 8 O -0.52 -3.74 13.07 -39.25 -0.51 -4.26 16 9 C -0.11 -1.17 6.55 -24.87 -0.16 -1.33 16 10 C 0.04 0.46 5.79 -1.90 -0.01 0.45 16 11 N -0.49 -6.42 4.62 -224.00 -1.03 -7.45 16 12 C 0.03 0.33 3.64 -4.97 -0.02 0.31 16 13 C 0.51 9.13 7.35 -10.99 -0.08 9.05 16 14 O -0.51 -11.63 14.42 5.55 0.08 -11.55 16 15 N -0.60 -10.59 2.46 -175.06 -0.43 -11.02 16 16 C 0.24 5.48 4.47 -5.19 -0.02 5.46 16 17 C -0.61 -16.33 9.39 -34.44 -0.32 -16.65 16 18 H 0.05 1.45 7.81 -52.48 -0.41 1.04 16 19 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 20 N -0.91 -26.60 13.65 55.43 0.76 -25.85 16 21 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.12 1.51 5.08 -4.04 -0.02 1.49 16 26 C -0.05 -0.48 5.97 -29.52 -0.18 -0.66 16 27 C 0.22 2.46 15.44 -20.74 -0.32 2.14 16 28 N -0.44 -6.22 18.54 42.18 0.78 -5.44 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.53 7.13 -51.93 -0.37 0.16 16 31 H 0.07 0.98 7.06 -51.93 -0.37 0.62 16 32 H 0.41 1.35 9.10 45.56 0.41 1.77 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.22 6.93 -51.93 -0.36 0.86 16 35 H 0.04 0.45 7.91 -51.93 -0.41 0.04 16 36 H 0.11 1.61 6.87 -51.93 -0.36 1.25 16 37 H 0.10 1.19 7.73 -51.93 -0.40 0.79 16 38 H 0.06 0.56 6.69 -51.93 -0.35 0.21 16 39 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 40 H 0.04 0.94 7.29 -51.93 -0.38 0.56 16 41 H 0.27 7.67 7.22 -40.82 -0.29 7.38 16 42 H 0.08 0.79 6.62 -51.93 -0.34 0.45 16 43 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 44 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.10 0.79 7.12 -51.93 -0.37 0.42 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -36.26 374.80 -7.06 -43.32 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.72 Total: -0.25 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.26 Total: 4.03 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.07 Total: -49.76 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.73 Total: -22.92 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.26 -7.06 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092940201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.502 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds