Wall clock time and date at job start Tue Mar 31 2020 14:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.05995 * 2 1 4 4 C 1.53995 * 109.91892 * 238.80104 * 2 1 3 5 5 H 1.08996 * 110.31096 * 120.49679 * 4 2 1 6 6 C 1.50700 * 110.39012 * 358.37645 * 4 2 1 7 7 O 1.20828 * 119.99955 * 275.07369 * 6 4 2 8 8 O 1.34227 * 120.00385 * 95.07486 * 6 4 2 9 9 C 1.54590 * 105.13804 * 239.41846 * 4 2 1 10 10 C 1.54935 * 102.92479 * 338.03994 * 9 4 2 11 11 N 1.47900 * 109.92039 * 121.20737 * 2 1 3 12 12 C 1.46906 * 110.99707 * 265.19700 * 11 2 1 13 13 C 1.50696 * 109.46865 * 176.55750 * 12 11 2 14 14 O 1.21285 * 120.00005 * 353.49643 * 13 12 11 15 15 N 1.34777 * 120.00146 * 173.49859 * 13 12 11 16 16 C 1.46504 * 120.00132 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47236 * 270.00187 * 16 15 13 18 18 H 1.08005 * 119.99982 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99963 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00193 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47130 * 270.00033 * 21 19 17 23 23 H 1.48496 * 109.47112 * 149.99620 * 21 19 17 24 24 H 1.48503 * 109.46714 * 29.99745 * 21 19 17 25 25 C 1.46505 * 119.99845 * 359.97438 * 15 13 12 26 26 C 1.52996 * 109.46822 * 269.99777 * 25 15 13 27 27 C 1.47203 * 109.47236 * 179.97438 * 26 25 15 28 28 N 6.95394 * 117.45505 * 41.63587 * 2 1 3 29 29 H 1.09004 * 109.47357 * 304.26667 * 1 2 3 30 30 H 1.08997 * 109.47604 * 64.27511 * 1 2 3 31 31 H 1.09005 * 109.46697 * 184.27634 * 1 2 3 32 32 H 0.96697 * 117.00430 * 179.97438 * 8 6 4 33 33 H 1.08998 * 110.72576 * 219.68204 * 9 4 2 34 34 H 1.09003 * 110.87797 * 96.47130 * 9 4 2 35 35 H 1.09002 * 110.66337 * 278.98177 * 10 9 4 36 36 H 1.08996 * 110.66867 * 155.84712 * 10 9 4 37 37 H 1.09001 * 109.47284 * 56.55797 * 12 11 2 38 38 H 1.09001 * 109.47221 * 296.55591 * 12 11 2 39 39 H 1.09001 * 109.46466 * 149.99831 * 16 15 13 40 40 H 1.09004 * 109.46989 * 30.00227 * 16 15 13 41 41 H 0.97001 * 119.99347 * 0.02562 * 20 19 17 42 42 H 1.08998 * 109.46933 * 29.99612 * 25 15 13 43 43 H 1.08996 * 109.47043 * 150.00287 * 25 15 13 44 44 H 1.09002 * 109.47710 * 300.00220 * 26 25 15 45 45 H 1.09007 * 109.47230 * 60.00116 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7500 -1.2384 5 1 2.6712 -0.0893 -1.8478 6 6 0.9060 -1.2891 -2.0514 7 8 0.4134 -2.3555 -1.7682 8 8 0.4300 -0.5848 -3.0902 9 6 2.9059 -1.9115 -0.6764 10 6 3.2682 -1.4184 0.7470 11 7 2.0339 -0.7205 1.1893 12 6 2.3212 0.2123 2.2872 13 6 2.7506 -0.5633 3.5058 14 8 2.6987 -1.7751 3.5028 15 7 3.1923 0.0895 4.5991 16 6 3.6092 -0.6645 5.7840 17 6 2.4246 -0.8670 6.6931 18 1 1.4578 -0.4731 6.4162 19 6 2.5751 -1.5543 7.8788 20 7 3.7524 -2.0336 8.2162 21 14 1.1068 -1.8048 9.0062 22 1 1.0176 -0.6718 9.9620 23 1 1.2708 -3.0749 9.7579 24 1 -0.1354 -1.8667 8.1947 25 6 3.2554 1.5532 4.6026 26 6 4.6253 2.0057 4.0933 27 6 4.6887 3.4763 4.0962 28 7 4.7361 4.6119 4.0998 29 1 -0.3634 0.5786 0.8493 30 1 -0.3634 0.4460 -0.9258 31 1 -0.3633 -1.0249 0.0766 32 1 -0.3073 -0.9716 -3.5820 33 1 3.8053 -2.0555 -1.2751 34 1 2.3242 -2.8321 -0.6292 35 1 4.1098 -0.7266 0.7119 36 1 3.4889 -2.2615 1.4017 37 1 1.4247 0.7871 2.5197 38 1 3.1203 0.8906 1.9881 39 1 4.3833 -0.1095 6.3139 40 1 4.0023 -1.6341 5.4779 41 1 4.5149 -1.9032 7.6310 42 1 2.4764 1.9520 3.9529 43 1 3.1056 1.9209 5.6177 44 1 5.4045 1.6068 4.7429 45 1 4.7752 1.6379 3.0781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092940201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:57 Heat of formation + Delta-G solvation = -117.779796 kcal Electronic energy + Delta-G solvation = -27992.504421 eV Core-core repulsion = 24009.169512 eV Total energy + Delta-G solvation = -3983.334909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.88112 -40.88306 -39.27479 -37.98404 -37.03580 -36.73335 -35.16231 -33.58761 -32.43534 -32.11591 -29.57092 -27.83560 -26.51536 -25.34275 -24.50413 -24.14205 -22.17852 -20.67831 -20.18772 -19.02620 -18.92262 -18.60770 -17.91401 -17.67912 -17.36634 -16.78123 -16.47031 -16.00706 -15.85062 -15.66650 -15.57949 -15.28360 -14.75156 -14.68027 -14.18845 -14.12426 -13.89360 -13.66511 -13.57571 -13.43259 -13.34798 -13.10144 -13.09456 -12.85214 -12.79833 -12.60910 -12.43185 -12.36096 -12.22998 -11.98393 -11.97436 -11.89614 -11.74135 -11.42778 -11.13873 -10.55091 -10.53656 -9.49701 -9.30300 -8.60745 -6.35847 1.21264 1.52101 1.61385 1.64852 1.77889 1.80856 1.87251 2.09225 2.19591 2.57017 2.88951 3.12022 3.18392 3.44926 3.48501 3.75691 3.99572 4.02181 4.06783 4.19285 4.25703 4.31510 4.35327 4.44978 4.47942 4.52017 4.65271 4.69597 4.76846 4.80566 4.86561 4.96307 5.00194 5.08490 5.10510 5.17890 5.28480 5.60124 5.65835 5.90068 5.92252 5.98257 6.25275 6.56496 6.57633 6.73641 7.04284 7.37318 7.52328 8.75429 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.003560 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.974343 B = 7863.956502 C = 9416.757692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.080 3.920 3 H 0.104 0.896 4 C -0.087 4.087 5 H 0.146 0.854 6 C 0.497 3.503 7 O -0.549 6.549 8 O -0.509 6.509 9 C -0.111 4.111 10 C 0.040 3.960 11 N -0.525 5.525 12 C 0.038 3.962 13 C 0.502 3.498 14 O -0.572 6.572 15 N -0.597 5.597 16 C 0.249 3.751 17 C -0.614 4.614 18 H 0.043 0.957 19 C -0.029 4.029 20 N -0.935 5.935 21 Si 1.113 2.887 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.282 1.282 25 C 0.113 3.887 26 C -0.036 4.036 27 C 0.245 3.755 28 N -0.486 5.486 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.425 0.575 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.029 0.971 40 H -0.003 1.003 41 H 0.259 0.741 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 9.700 -22.650 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 H 0.122 0.878 4 C -0.107 4.107 5 H 0.164 0.836 6 C 0.340 3.660 7 O -0.439 6.439 8 O -0.323 6.323 9 C -0.149 4.149 10 C -0.087 4.087 11 N -0.250 5.250 12 C -0.092 4.092 13 C 0.290 3.710 14 O -0.450 6.450 15 N -0.329 5.329 16 C 0.128 3.872 17 C -0.653 4.653 18 H 0.061 0.939 19 C -0.228 4.228 20 N -0.572 5.572 21 Si 0.936 3.064 22 H -0.191 1.191 23 H -0.212 1.212 24 H -0.208 1.208 25 C -0.011 4.011 26 C -0.077 4.077 27 C -0.073 4.073 28 N -0.164 5.164 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.287 0.713 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.047 0.953 40 H 0.015 0.985 41 H 0.068 0.932 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.136 0.864 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.856 9.619 -20.723 22.922 hybrid contribution 0.510 -0.088 -1.429 1.520 sum -1.346 9.531 -22.152 24.153 Atomic orbital electron populations 1.22013 0.94410 1.01759 1.02878 1.22353 0.96232 0.97329 0.86834 0.87798 1.22050 0.93549 0.99590 0.95467 0.83636 1.23293 0.83199 0.81567 0.77910 1.90748 1.59593 1.24809 1.68718 1.84508 1.52696 1.52764 1.42322 1.22546 0.99993 0.97035 0.95312 1.23223 0.91203 0.99020 0.95256 1.64375 1.28667 1.26120 1.05869 1.22280 1.03674 0.93978 0.89308 1.21155 0.76891 0.88073 0.84850 1.90680 1.54349 1.16659 1.83276 1.47933 1.64140 1.06879 1.13911 1.18858 0.94697 0.90948 0.82746 1.22609 0.96790 1.39017 1.06868 0.93858 1.27078 1.03610 0.92799 0.99299 1.70897 1.00975 1.45139 1.40227 0.82964 0.71746 0.77350 0.74386 1.19063 1.21157 1.20756 1.21520 0.96467 0.79115 1.04017 1.19812 1.00480 0.80426 1.06988 1.29118 0.91819 0.94871 0.91453 1.81292 1.10009 1.14300 1.10808 0.91393 0.90314 0.94259 0.71316 0.87422 0.92012 0.90842 0.91950 0.86430 0.87778 0.95313 0.98463 0.93164 0.87382 0.90190 0.86392 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.37 71.98 0.60 -2.28 16 2 C 0.08 1.33 3.08 45.06 0.14 1.47 16 3 H 0.10 1.03 7.77 -2.38 -0.02 1.01 16 4 C -0.09 -1.30 3.48 -10.66 -0.04 -1.34 16 5 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 6 C 0.50 9.06 5.20 71.24 0.37 9.43 16 7 O -0.55 -15.01 15.72 21.96 0.35 -14.66 16 8 O -0.51 -5.79 13.07 -51.38 -0.67 -6.47 16 9 C -0.11 -2.12 6.55 31.80 0.21 -1.91 16 10 C 0.04 0.92 5.79 86.65 0.50 1.43 16 11 N -0.52 -12.82 4.62 -862.60 -3.98 -16.80 16 12 C 0.04 0.85 3.64 85.55 0.31 1.16 16 13 C 0.50 17.71 7.35 87.66 0.64 18.35 16 14 O -0.57 -27.15 14.42 -3.05 -0.04 -27.19 16 15 N -0.60 -20.76 2.46 -826.15 -2.03 -22.79 16 16 C 0.25 11.83 4.47 85.63 0.38 12.21 16 17 C -0.61 -33.68 9.39 25.60 0.24 -33.44 16 18 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 19 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 20 N -0.93 -56.10 13.65 21.45 0.29 -55.81 16 21 Si 1.11 50.70 29.90 68.60 2.05 52.75 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 C 0.11 2.59 5.08 86.38 0.44 3.03 16 26 C -0.04 -0.57 5.97 28.79 0.17 -0.40 16 27 C 0.24 4.78 15.44 89.44 1.38 6.16 16 28 N -0.49 -12.50 18.54 20.01 0.37 -12.13 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 1.15 7.13 -2.39 -0.02 1.14 16 31 H 0.04 1.02 7.06 -2.38 -0.02 1.01 16 32 H 0.43 1.78 9.10 -74.06 -0.67 1.10 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.63 6.93 -2.39 -0.02 1.61 16 35 H 0.07 1.23 7.91 -2.39 -0.02 1.21 16 36 H 0.06 1.99 6.87 -2.39 -0.02 1.98 16 37 H 0.12 2.27 7.73 -2.39 -0.02 2.25 16 38 H 0.10 1.35 6.69 -2.39 -0.02 1.34 16 39 H 0.03 1.33 7.94 -2.39 -0.02 1.31 16 40 H 0.00 -0.15 7.29 -2.39 -0.02 -0.16 16 41 H 0.26 15.44 7.22 -92.71 -0.67 14.77 16 42 H 0.11 1.80 6.62 -2.39 -0.02 1.78 16 43 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 44 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.14 1.34 7.12 -2.38 -0.02 1.33 16 Total: -1.00 -85.70 374.80 2.60 -83.10 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.45 Total: 7.31 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 5.82 Total: 12.69 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -5.35 Total: -107.53 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -0.37 Total: -48.32 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Total: -85.70 2.60 -83.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092940201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.677 kcal (2) G-P(sol) polarization free energy of solvation -85.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds