Wall clock time and date at job start Tue Mar 31 2020 14:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.01444 * 2 1 4 4 C 1.54314 * 109.88767 * 121.11584 * 2 1 3 5 5 H 1.08999 * 110.70898 * 23.30641 * 4 2 1 6 6 C 1.50705 * 110.70656 * 260.24414 * 4 2 1 7 7 O 1.20823 * 120.00076 * 0.02562 * 6 4 2 8 8 O 1.34232 * 119.99920 * 180.02562 * 6 4 2 9 9 C 1.55141 * 103.02216 * 141.69018 * 4 2 1 10 10 C 1.54909 * 101.64862 * 324.34653 * 9 4 2 11 11 N 1.47443 * 109.88698 * 238.88522 * 2 1 3 12 12 C 1.46893 * 111.00199 * 3.85330 * 11 2 1 13 13 C 1.50702 * 109.47443 * 170.00324 * 12 11 2 14 14 O 1.21283 * 119.99624 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00071 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99840 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47029 * 269.99875 * 16 15 13 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.46506 * 120.00246 * 359.97438 * 15 13 12 26 26 C 1.52998 * 109.46637 * 269.99952 * 25 15 13 27 27 C 1.47203 * 109.46913 * 179.97438 * 26 25 15 28 28 N 7.02288 * 40.44033 * 222.28469 * 2 1 3 29 29 H 1.09000 * 109.47403 * 179.66136 * 1 2 3 30 30 H 1.09004 * 109.46918 * 299.66119 * 1 2 3 31 31 H 1.09004 * 109.47384 * 59.65817 * 1 2 3 32 32 H 0.96693 * 116.99874 * 180.02562 * 8 6 4 33 33 H 1.08998 * 110.99141 * 82.43377 * 9 4 2 34 34 H 1.08997 * 110.99452 * 206.22362 * 9 4 2 35 35 H 1.09004 * 110.37671 * 278.23756 * 10 9 4 36 36 H 1.08999 * 110.37327 * 155.89950 * 10 9 4 37 37 H 1.08995 * 109.47212 * 49.99470 * 12 11 2 38 38 H 1.09004 * 109.46822 * 290.00296 * 12 11 2 39 39 H 1.09003 * 109.46930 * 150.00141 * 16 15 13 40 40 H 1.08996 * 109.47301 * 29.99708 * 16 15 13 41 41 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 42 42 H 1.08998 * 109.47112 * 29.99740 * 25 15 13 43 43 H 1.09005 * 109.46959 * 150.00126 * 25 15 13 44 44 H 1.08998 * 109.47196 * 299.99737 * 26 25 15 45 45 H 1.09000 * 109.47202 * 59.99913 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0549 -0.7499 1.2423 5 1 1.3055 -1.4472 1.6169 6 6 2.4608 0.2226 2.3197 7 8 2.3491 1.4112 2.1340 8 8 2.9465 -0.2318 3.4857 9 6 3.2891 -1.5135 0.6941 10 6 2.8188 -1.8833 -0.7348 11 7 2.0315 -0.7165 -1.1870 12 6 0.9240 -1.1339 -2.0570 13 6 1.4756 -1.6388 -3.3654 14 8 2.6735 -1.6493 -3.5547 15 7 0.6377 -2.0776 -4.3255 16 6 1.1740 -2.5678 -5.5976 17 6 1.2851 -1.4224 -6.5707 18 1 0.9858 -0.4287 -6.2716 19 6 1.7679 -1.6432 -7.8431 20 7 2.1320 -2.8532 -8.2076 21 14 1.9063 -0.2233 -9.0490 22 1 0.6418 -0.1020 -9.8181 23 1 3.0320 -0.4758 -9.9840 24 1 2.1551 1.0368 -8.3036 25 6 -0.8093 -2.0644 -4.0970 26 6 -1.2391 -3.3933 -3.4725 27 6 -2.6930 -3.3798 -3.2423 28 7 -3.8150 -3.3702 -3.0650 29 1 -0.3634 -1.0276 -0.0061 30 1 -0.3633 0.5086 0.8930 31 1 -0.3634 0.5191 -0.8869 32 1 3.1929 0.4299 4.1463 33 1 4.1657 -0.8664 0.6614 34 1 3.4885 -2.4081 1.2839 35 1 2.1939 -2.7760 -0.7095 36 1 3.6771 -2.0384 -1.3885 37 1 0.2678 -0.2837 -2.2431 38 1 0.3592 -1.9289 -1.5699 39 1 0.5063 -3.3271 -6.0049 40 1 2.1603 -3.0017 -5.4331 41 1 2.0605 -3.5904 -7.5812 42 1 -1.0632 -1.2469 -3.4222 43 1 -1.3258 -1.9253 -5.0468 44 1 -0.9852 -4.2108 -4.1472 45 1 -0.7225 -3.5323 -2.5228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092940203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:01 Heat of formation + Delta-G solvation = -85.905131 kcal Electronic energy + Delta-G solvation = -28009.884957 eV Core-core repulsion = 24027.932237 eV Total energy + Delta-G solvation = -3981.952720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07106 -39.78885 -38.45895 -36.92373 -36.42138 -35.31731 -33.32603 -32.68341 -31.51980 -30.86825 -28.14861 -26.49998 -25.80405 -24.06912 -23.26418 -22.68926 -21.37362 -19.87126 -18.59204 -18.39912 -17.71172 -17.50878 -16.97855 -16.61897 -16.30522 -15.72657 -15.29607 -15.08398 -14.70465 -14.54609 -14.16591 -13.86003 -13.77820 -13.71390 -13.14863 -13.10762 -12.79494 -12.64402 -12.50478 -12.43901 -12.11898 -12.09635 -11.85289 -11.79003 -11.64939 -11.50122 -11.37436 -11.20816 -11.09937 -10.90501 -10.86811 -10.68517 -10.59176 -10.12037 -9.22105 -9.07977 -8.41143 -8.30023 -7.79180 -6.41390 -4.13884 1.86738 2.62267 2.64525 2.70906 3.23022 3.41082 3.42608 3.48664 3.63626 3.80513 4.00928 4.23157 4.32246 4.51736 4.55284 4.83088 4.86656 4.92595 4.98697 5.03057 5.08340 5.13091 5.20133 5.22264 5.32135 5.34161 5.35855 5.43122 5.60812 5.70678 5.76263 5.85181 5.96285 5.96481 6.10703 6.16584 6.62566 6.86879 6.87873 7.05689 7.27259 7.47261 7.55353 7.98482 8.13684 8.40166 8.75059 8.92595 9.55257 10.96359 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.003473 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.629540 B = 8059.826955 C = 9473.941489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.080 3.920 3 H 0.109 0.891 4 C -0.105 4.105 5 H 0.114 0.886 6 C 0.491 3.509 7 O -0.509 6.509 8 O -0.516 6.516 9 C -0.115 4.115 10 C 0.047 3.953 11 N -0.500 5.500 12 C 0.024 3.976 13 C 0.508 3.492 14 O -0.513 6.513 15 N -0.596 5.596 16 C 0.237 3.763 17 C -0.607 4.607 18 H 0.053 0.947 19 C 0.021 3.979 20 N -0.910 5.910 21 Si 1.072 2.928 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.288 1.288 25 C 0.118 3.882 26 C -0.050 4.050 27 C 0.215 3.785 28 N -0.442 5.442 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.410 0.590 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.023 0.977 40 H 0.036 0.964 41 H 0.267 0.733 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 0.651 21.333 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.028 4.028 3 H 0.127 0.873 4 C -0.125 4.125 5 H 0.132 0.868 6 C 0.333 3.667 7 O -0.396 6.396 8 O -0.328 6.328 9 C -0.153 4.153 10 C -0.080 4.080 11 N -0.224 5.224 12 C -0.107 4.107 13 C 0.293 3.707 14 O -0.388 6.388 15 N -0.329 5.329 16 C 0.118 3.882 17 C -0.646 4.646 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.546 5.546 21 Si 0.900 3.100 22 H -0.215 1.215 23 H -0.209 1.209 24 H -0.214 1.214 25 C -0.008 4.008 26 C -0.091 4.091 27 C -0.103 4.103 28 N -0.119 5.119 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.269 0.731 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.134 0.866 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.870 1.413 19.272 19.535 hybrid contribution -0.602 -0.472 2.437 2.554 sum -3.472 0.941 21.708 22.004 Atomic orbital electron populations 1.22442 0.95208 1.02278 1.03255 1.22541 0.94289 0.99907 0.86107 0.87330 1.22394 1.00777 0.96765 0.92543 0.86807 1.23155 0.73053 0.88677 0.81845 1.90732 1.50790 1.18242 1.79845 1.84538 1.76001 1.45641 1.26595 1.22741 0.96064 1.00284 0.96231 1.23152 0.99212 0.91344 0.94268 1.63513 1.20580 1.23708 1.14608 1.22483 0.93937 1.00963 0.93286 1.20224 0.87103 0.78529 0.84804 1.90680 1.14906 1.53047 1.80137 1.48008 1.04343 1.63450 1.17078 1.19369 0.94672 0.95238 0.78966 1.22269 1.47713 0.95530 0.99045 0.92888 1.25767 0.93232 1.01509 0.97803 1.70794 1.44689 1.00238 1.38848 0.83496 0.76816 0.74325 0.75367 1.21493 1.20909 1.21432 1.21292 0.83377 0.93954 1.02204 1.19893 0.82135 1.02873 1.04235 1.29073 0.95050 0.93179 0.92983 1.81220 1.12767 1.08634 1.09291 0.92124 0.91831 0.90803 0.73149 0.89923 0.89420 0.93400 0.88000 0.87602 0.92154 0.95935 0.94618 0.92225 0.90657 0.88739 0.86611 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 7.83 37.16 0.29 -1.22 16 2 C 0.08 0.85 3.44 -66.73 -0.23 0.62 16 3 H 0.11 1.39 6.81 -51.93 -0.35 1.04 16 4 C -0.10 -0.92 2.96 -89.95 -0.27 -1.18 16 5 H 0.11 0.79 7.85 -51.93 -0.41 0.38 16 6 C 0.49 4.64 7.64 36.01 0.28 4.92 16 7 O -0.51 -6.39 16.18 -18.75 -0.30 -6.70 16 8 O -0.52 -3.53 13.42 -39.26 -0.53 -4.06 16 9 C -0.12 -1.03 6.52 -24.59 -0.16 -1.19 16 10 C 0.05 0.55 5.74 -2.30 -0.01 0.54 16 11 N -0.50 -6.55 4.86 -224.79 -1.09 -7.64 16 12 C 0.02 0.31 2.73 -4.98 -0.01 0.30 16 13 C 0.51 9.10 7.47 -10.99 -0.08 9.02 16 14 O -0.51 -11.62 14.62 5.55 0.08 -11.54 16 15 N -0.60 -10.61 2.46 -175.05 -0.43 -11.04 16 16 C 0.24 5.48 4.47 -5.19 -0.02 5.46 16 17 C -0.61 -16.31 9.39 -34.44 -0.32 -16.64 16 18 H 0.05 1.45 7.81 -52.48 -0.41 1.04 16 19 C 0.02 0.59 5.46 -17.82 -0.10 0.50 16 20 N -0.91 -26.60 13.65 55.43 0.76 -25.85 16 21 Si 1.07 25.01 29.90 -169.99 -5.08 19.93 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 26 C -0.05 -0.49 6.03 -29.52 -0.18 -0.66 16 27 C 0.22 2.46 15.43 -20.76 -0.32 2.14 16 28 N -0.44 -6.22 18.54 42.15 0.78 -5.44 16 29 H 0.06 0.45 6.91 -51.93 -0.36 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.65 6.42 -51.93 -0.33 0.32 16 32 H 0.41 1.15 9.10 45.56 0.41 1.57 16 33 H 0.08 0.80 8.05 -51.93 -0.42 0.39 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.50 7.62 -51.93 -0.40 0.10 16 36 H 0.10 1.46 7.38 -51.93 -0.38 1.08 16 37 H 0.11 1.24 5.34 -51.93 -0.28 0.96 16 38 H 0.06 0.58 5.85 -51.93 -0.30 0.28 16 39 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 40 H 0.04 0.93 7.29 -51.93 -0.38 0.56 16 41 H 0.27 7.67 7.22 -40.82 -0.29 7.37 16 42 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 43 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 44 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.10 0.79 7.22 -51.93 -0.38 0.42 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -36.12 373.01 -6.86 -42.98 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.50 Total: -0.35 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.16 Total: 4.09 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.01 Total: -49.97 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.75 Total: -22.29 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.12 -6.86 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092940203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.923 kcal (2) G-P(sol) polarization free energy of solvation -36.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds