Wall clock time and date at job start Tue Mar 31 2020 14:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.01444 * 2 1 4 4 C 1.54314 * 109.88767 * 121.11584 * 2 1 3 5 5 H 1.08999 * 110.70898 * 23.30641 * 4 2 1 6 6 C 1.50705 * 110.70656 * 260.24414 * 4 2 1 7 7 O 1.20823 * 120.00076 * 0.02562 * 6 4 2 8 8 O 1.34232 * 119.99920 * 180.02562 * 6 4 2 9 9 C 1.55141 * 103.02216 * 141.69018 * 4 2 1 10 10 C 1.54909 * 101.64862 * 324.34653 * 9 4 2 11 11 N 1.47443 * 109.88698 * 238.88522 * 2 1 3 12 12 C 1.46893 * 111.00199 * 3.85330 * 11 2 1 13 13 C 1.50702 * 109.47443 * 170.00324 * 12 11 2 14 14 O 1.21283 * 119.99624 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00071 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99840 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47029 * 269.99875 * 16 15 13 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.46506 * 120.00246 * 359.97438 * 15 13 12 26 26 C 1.52998 * 109.46637 * 269.99952 * 25 15 13 27 27 C 1.47203 * 109.46913 * 179.97438 * 26 25 15 28 28 N 7.02288 * 40.44033 * 222.28469 * 2 1 3 29 29 H 1.09000 * 109.47403 * 179.66136 * 1 2 3 30 30 H 1.09004 * 109.46918 * 299.66119 * 1 2 3 31 31 H 1.09004 * 109.47384 * 59.65817 * 1 2 3 32 32 H 0.96693 * 116.99874 * 180.02562 * 8 6 4 33 33 H 1.08998 * 110.99141 * 82.43377 * 9 4 2 34 34 H 1.08997 * 110.99452 * 206.22362 * 9 4 2 35 35 H 1.09004 * 110.37671 * 278.23756 * 10 9 4 36 36 H 1.08999 * 110.37327 * 155.89950 * 10 9 4 37 37 H 1.08995 * 109.47212 * 49.99470 * 12 11 2 38 38 H 1.09004 * 109.46822 * 290.00296 * 12 11 2 39 39 H 1.09003 * 109.46930 * 150.00141 * 16 15 13 40 40 H 1.08996 * 109.47301 * 29.99708 * 16 15 13 41 41 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 42 42 H 1.08998 * 109.47112 * 29.99740 * 25 15 13 43 43 H 1.09005 * 109.46959 * 150.00126 * 25 15 13 44 44 H 1.08998 * 109.47196 * 299.99737 * 26 25 15 45 45 H 1.09000 * 109.47202 * 59.99913 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0549 -0.7499 1.2423 5 1 1.3055 -1.4472 1.6169 6 6 2.4608 0.2226 2.3197 7 8 2.3491 1.4112 2.1340 8 8 2.9465 -0.2318 3.4857 9 6 3.2891 -1.5135 0.6941 10 6 2.8188 -1.8833 -0.7348 11 7 2.0315 -0.7165 -1.1870 12 6 0.9240 -1.1339 -2.0570 13 6 1.4756 -1.6388 -3.3654 14 8 2.6735 -1.6493 -3.5547 15 7 0.6377 -2.0776 -4.3255 16 6 1.1740 -2.5678 -5.5976 17 6 1.2851 -1.4224 -6.5707 18 1 0.9858 -0.4287 -6.2716 19 6 1.7679 -1.6432 -7.8431 20 7 2.1320 -2.8532 -8.2076 21 14 1.9063 -0.2233 -9.0490 22 1 0.6418 -0.1020 -9.8181 23 1 3.0320 -0.4758 -9.9840 24 1 2.1551 1.0368 -8.3036 25 6 -0.8093 -2.0644 -4.0970 26 6 -1.2391 -3.3933 -3.4725 27 6 -2.6930 -3.3798 -3.2423 28 7 -3.8150 -3.3702 -3.0650 29 1 -0.3634 -1.0276 -0.0061 30 1 -0.3633 0.5086 0.8930 31 1 -0.3634 0.5191 -0.8869 32 1 3.1929 0.4299 4.1463 33 1 4.1657 -0.8664 0.6614 34 1 3.4885 -2.4081 1.2839 35 1 2.1939 -2.7760 -0.7095 36 1 3.6771 -2.0384 -1.3885 37 1 0.2678 -0.2837 -2.2431 38 1 0.3592 -1.9289 -1.5699 39 1 0.5063 -3.3271 -6.0049 40 1 2.1603 -3.0017 -5.4331 41 1 2.0605 -3.5904 -7.5812 42 1 -1.0632 -1.2469 -3.4222 43 1 -1.3258 -1.9253 -5.0468 44 1 -0.9852 -4.2108 -4.1472 45 1 -0.7225 -3.5323 -2.5228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092940203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:00 Heat of formation + Delta-G solvation = -112.727847 kcal Electronic energy + Delta-G solvation = -28011.048077 eV Core-core repulsion = 24027.932237 eV Total energy + Delta-G solvation = -3983.115840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86904 -40.90778 -39.48957 -37.98541 -37.10775 -36.72373 -35.15325 -33.66731 -32.32138 -32.08910 -29.55489 -27.62419 -26.90286 -25.33521 -24.67364 -23.75955 -22.21662 -20.81668 -19.82927 -19.10210 -18.93683 -18.60081 -18.34079 -17.75947 -17.23071 -16.74241 -16.41694 -16.01402 -15.84739 -15.63771 -15.52422 -15.20795 -14.75462 -14.73987 -14.43095 -14.18552 -13.89228 -13.58711 -13.57364 -13.49237 -13.26824 -13.24836 -12.96349 -12.84097 -12.75853 -12.56155 -12.47343 -12.41930 -12.28997 -11.97415 -11.94511 -11.86593 -11.72429 -11.47105 -11.12721 -10.53307 -10.51129 -9.46805 -9.19327 -8.59651 -6.34672 1.16307 1.53029 1.62100 1.66093 1.78731 1.81538 1.87474 2.01997 2.23853 2.57853 2.91950 3.11477 3.19242 3.35618 3.56959 3.73828 3.91923 4.00585 4.06112 4.17902 4.21626 4.25629 4.39492 4.45080 4.46930 4.51696 4.55874 4.69033 4.77595 4.86668 4.96929 4.99913 5.02825 5.09952 5.11370 5.17851 5.26796 5.59579 5.61543 5.93436 5.95947 6.03123 6.26636 6.57703 6.58106 6.75373 6.97819 7.38451 7.54005 8.76525 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.003473 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.629540 B = 8059.826955 C = 9473.941489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 H 0.079 0.921 4 C -0.098 4.098 5 H 0.145 0.855 6 C 0.497 3.503 7 O -0.547 6.547 8 O -0.508 6.508 9 C -0.106 4.106 10 C 0.047 3.953 11 N -0.533 5.533 12 C 0.038 3.962 13 C 0.500 3.500 14 O -0.572 6.572 15 N -0.597 5.597 16 C 0.249 3.751 17 C -0.614 4.614 18 H 0.043 0.957 19 C -0.029 4.029 20 N -0.935 5.935 21 Si 1.113 2.887 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.282 1.282 25 C 0.113 3.887 26 C -0.036 4.036 27 C 0.245 3.755 28 N -0.486 5.486 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.428 0.572 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.029 0.971 40 H -0.002 1.002 41 H 0.259 0.741 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 0.498 23.537 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 H 0.097 0.903 4 C -0.117 4.117 5 H 0.163 0.837 6 C 0.340 3.660 7 O -0.437 6.437 8 O -0.321 6.321 9 C -0.144 4.144 10 C -0.080 4.080 11 N -0.258 5.258 12 C -0.093 4.093 13 C 0.289 3.711 14 O -0.450 6.450 15 N -0.329 5.329 16 C 0.127 3.873 17 C -0.652 4.652 18 H 0.061 0.939 19 C -0.228 4.228 20 N -0.573 5.573 21 Si 0.935 3.065 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.207 1.207 25 C -0.012 4.012 26 C -0.077 4.077 27 C -0.073 4.073 28 N -0.164 5.164 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.290 0.710 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.069 0.931 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.137 0.863 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.624 1.253 21.532 22.058 hybrid contribution 0.004 -0.410 1.804 1.850 sum -4.620 0.843 23.336 23.804 Atomic orbital electron populations 1.22431 0.93201 1.03784 1.03507 1.22396 0.95878 0.98316 0.86086 0.90267 1.22379 1.01111 0.96638 0.91614 0.83714 1.23241 0.72275 0.88075 0.82410 1.90731 1.52538 1.19827 1.80645 1.84492 1.75235 1.46182 1.26211 1.22673 0.95625 1.01104 0.94980 1.23055 0.98228 0.91797 0.94880 1.63299 1.21502 1.24804 1.16166 1.22451 0.93894 1.02558 0.90375 1.21259 0.86380 0.77197 0.86281 1.90662 1.17602 1.55259 1.81464 1.47919 1.06609 1.63092 1.15252 1.18862 0.93307 0.94131 0.80963 1.22613 1.46725 0.96090 0.99821 0.93901 1.27066 0.92791 1.02832 1.00081 1.70894 1.46623 1.00794 1.38946 0.82965 0.77623 0.71977 0.73890 1.19159 1.21123 1.20740 1.21520 0.79981 0.96933 1.02737 1.19815 0.81206 1.00945 1.05774 1.29100 0.94834 0.91822 0.91527 1.81269 1.14089 1.09987 1.11031 0.89820 0.91220 0.91054 0.71042 0.91477 0.86752 0.91502 0.91844 0.86149 0.87850 0.95332 0.98356 0.93147 0.87526 0.90183 0.86328 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 7.83 71.98 0.56 -1.79 16 2 C 0.08 1.58 3.44 45.26 0.16 1.73 16 3 H 0.08 2.02 6.81 -2.39 -0.02 2.00 16 4 C -0.10 -1.43 2.96 -10.36 -0.03 -1.46 16 5 H 0.15 1.27 7.85 -2.39 -0.02 1.25 16 6 C 0.50 8.38 7.64 71.24 0.54 8.92 16 7 O -0.55 -13.31 16.18 21.97 0.36 -12.95 16 8 O -0.51 -5.55 13.42 -51.43 -0.69 -6.24 16 9 C -0.11 -1.70 6.52 31.98 0.21 -1.49 16 10 C 0.05 1.06 5.74 86.77 0.50 1.55 16 11 N -0.53 -13.26 4.86 -865.09 -4.21 -17.47 16 12 C 0.04 0.85 2.73 85.56 0.23 1.09 16 13 C 0.50 17.64 7.47 87.66 0.65 18.29 16 14 O -0.57 -26.77 14.62 -3.04 -0.04 -26.82 16 15 N -0.60 -20.79 2.46 -826.13 -2.03 -22.82 16 16 C 0.25 11.78 4.47 85.63 0.38 12.17 16 17 C -0.61 -33.60 9.39 25.60 0.24 -33.36 16 18 H 0.04 2.38 7.81 -2.91 -0.02 2.35 16 19 C -0.03 -1.64 5.46 84.65 0.46 -1.17 16 20 N -0.93 -55.90 13.65 21.45 0.29 -55.60 16 21 Si 1.11 50.58 29.90 68.60 2.05 52.63 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 C 0.11 2.61 5.17 86.38 0.45 3.06 16 26 C -0.04 -0.58 6.03 28.79 0.17 -0.41 16 27 C 0.24 4.82 15.43 89.44 1.38 6.20 16 28 N -0.49 -12.56 18.54 20.01 0.37 -12.19 16 29 H 0.08 0.76 6.91 -2.39 -0.02 0.75 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 1.02 6.42 -2.38 -0.02 1.00 16 32 H 0.43 1.35 9.10 -74.06 -0.67 0.67 16 33 H 0.07 1.28 8.05 -2.39 -0.02 1.26 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.20 7.62 -2.38 -0.02 1.18 16 36 H 0.06 1.90 7.38 -2.39 -0.02 1.88 16 37 H 0.12 2.41 5.34 -2.39 -0.01 2.40 16 38 H 0.10 1.45 5.85 -2.39 -0.01 1.44 16 39 H 0.03 1.32 7.94 -2.39 -0.02 1.30 16 40 H 0.00 -0.09 7.29 -2.39 -0.02 -0.11 16 41 H 0.26 15.37 7.22 -92.71 -0.67 14.70 16 42 H 0.11 1.83 6.44 -2.39 -0.02 1.81 16 43 H 0.08 2.12 8.07 -2.38 -0.02 2.10 16 44 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.14 1.36 7.22 -2.39 -0.02 1.34 16 Total: -1.00 -83.56 373.01 2.47 -81.09 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.46 Total: 7.02 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 5.91 Total: 13.35 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -5.57 Total: -108.09 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.38 Total: -46.00 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -83.56 2.47 -81.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092940203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.640 kcal (2) G-P(sol) polarization free energy of solvation -83.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds