Wall clock time and date at job start Tue Mar 31 2020 14:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.90708 * 2 1 4 4 C 1.53994 * 109.91522 * 121.29825 * 2 1 3 5 5 H 1.08999 * 110.31213 * 239.59166 * 4 2 1 6 6 C 1.50701 * 110.30858 * 1.66855 * 4 2 1 7 7 O 1.20822 * 120.00186 * 86.69466 * 6 4 2 8 8 O 1.34228 * 120.00011 * 266.69380 * 6 4 2 9 9 C 1.54603 * 105.13756 * 120.58030 * 4 2 1 10 10 C 1.54939 * 102.91980 * 21.95657 * 9 4 2 11 11 N 1.47893 * 109.92151 * 238.89254 * 2 1 3 12 12 C 1.46900 * 111.00122 * 94.80287 * 11 2 1 13 13 C 1.50702 * 109.47111 * 170.00199 * 12 11 2 14 14 O 1.21279 * 120.00107 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99968 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99775 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47170 * 269.99621 * 16 15 13 18 18 H 1.08003 * 119.99665 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99758 * 180.02562 * 17 16 15 20 20 N 1.31504 * 120.00264 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99532 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47530 * 60.00360 * 21 19 17 23 23 H 1.48501 * 109.46789 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47206 * 299.99968 * 21 19 17 25 25 C 1.46501 * 119.99712 * 0.02562 * 15 13 12 26 26 C 1.53003 * 109.47207 * 89.99943 * 25 15 13 27 27 C 1.47199 * 109.47214 * 179.97438 * 26 25 15 28 28 N 6.92514 * 108.30981 * 318.80597 * 2 1 3 29 29 H 1.08997 * 109.46744 * 178.98850 * 1 2 3 30 30 H 1.08997 * 109.47541 * 298.99235 * 1 2 3 31 31 H 1.09006 * 109.46711 * 58.99232 * 1 2 3 32 32 H 0.96693 * 117.00407 * 180.02562 * 8 6 4 33 33 H 1.09003 * 110.72116 * 140.31758 * 9 4 2 34 34 H 1.09003 * 110.72562 * 263.42485 * 9 4 2 35 35 H 1.09005 * 110.66682 * 204.14563 * 10 9 4 36 36 H 1.09001 * 110.66488 * 81.02164 * 10 9 4 37 37 H 1.08996 * 109.46901 * 50.00309 * 12 11 2 38 38 H 1.08996 * 109.47211 * 289.99974 * 12 11 2 39 39 H 1.08994 * 109.47226 * 30.00560 * 16 15 13 40 40 H 1.09006 * 109.46490 * 150.00333 * 16 15 13 41 41 H 0.96996 * 120.00326 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.46968 * 330.00090 * 25 15 13 43 43 H 1.08997 * 109.46728 * 209.99578 * 25 15 13 44 44 H 1.09002 * 109.47291 * 300.00142 * 26 25 15 45 45 H 1.09004 * 109.46779 * 59.99463 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0546 -0.7521 1.2372 5 1 2.6699 -0.0921 1.8485 6 6 0.9045 -1.2928 2.0472 7 8 0.4331 -2.3729 1.7809 8 8 0.4038 -0.5743 3.0645 9 6 2.9059 -1.9128 0.6731 10 6 3.2681 -1.4172 -0.7495 11 7 2.0339 -0.7184 -1.1905 12 6 2.3213 0.2162 -2.2868 13 6 3.0562 -0.5084 -3.3849 14 8 3.3156 -1.6871 -3.2658 15 7 3.4254 0.1536 -4.4995 16 6 4.1403 -0.5507 -5.5667 17 6 5.6247 -0.4573 -5.3235 18 1 5.9980 0.0732 -4.4601 19 6 6.5059 -1.0492 -6.2034 20 7 6.0513 -1.6947 -7.2550 21 14 8.3458 -0.9340 -5.9014 22 1 8.6727 -1.5562 -4.5933 23 1 9.0705 -1.6468 -6.9840 24 1 8.7567 0.4929 -5.8874 25 6 3.1125 1.5776 -4.6431 26 6 4.2622 2.4122 -4.0751 27 6 3.9482 3.8429 -4.2200 28 7 3.7056 4.9472 -4.3301 29 1 -0.3633 -1.0275 -0.0181 30 1 -0.3634 0.4981 0.8988 31 1 -0.3633 0.5294 -0.8809 32 1 -0.3334 -0.9626 3.5552 33 1 3.8052 -2.0579 1.2717 34 1 2.3224 -2.8324 0.6271 35 1 3.4890 -2.2592 -1.4057 36 1 4.1097 -0.7255 -0.7132 37 1 2.9384 1.0340 -1.9147 38 1 1.3858 0.6159 -2.6781 39 1 3.8388 -1.5981 -5.5763 40 1 3.9002 -0.0946 -6.5272 41 1 6.6713 -2.1108 -7.8741 42 1 2.1956 1.8047 -4.0995 43 1 2.9779 1.8153 -5.6983 44 1 4.3970 2.1744 -3.0199 45 1 5.1793 2.1849 -4.6187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092940207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:07 Heat of formation + Delta-G solvation = -85.373419 kcal Electronic energy + Delta-G solvation = -28134.631010 eV Core-core repulsion = 24152.701347 eV Total energy + Delta-G solvation = -3981.929663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.03330 -39.66302 -38.18320 -36.78947 -36.26047 -35.26027 -33.03871 -32.43530 -31.52336 -30.79374 -28.34489 -26.78814 -25.46229 -23.92071 -23.37249 -22.69582 -21.13073 -19.88411 -18.64781 -18.24776 -17.59972 -16.88482 -16.57790 -16.38581 -16.29324 -15.75511 -15.18029 -15.10882 -14.68683 -14.54320 -14.24793 -13.98887 -13.66616 -13.21744 -13.09385 -12.99040 -12.57582 -12.41789 -12.40428 -12.33141 -12.15347 -11.97447 -11.80105 -11.65877 -11.42646 -11.31078 -11.28051 -11.12899 -11.06477 -10.86084 -10.74168 -10.61508 -10.56320 -10.17094 -9.72630 -8.94122 -8.50970 -8.37784 -7.88261 -6.12527 -4.18226 2.00606 2.77552 2.79350 2.87648 3.24921 3.26249 3.32123 3.34132 3.47706 3.94083 4.18779 4.31321 4.36355 4.41509 4.77573 4.92153 5.02823 5.06253 5.13766 5.17772 5.21855 5.23517 5.28636 5.34026 5.41573 5.48906 5.50969 5.62298 5.68819 5.79269 5.90033 6.06499 6.12352 6.13264 6.28784 6.40545 6.81539 6.88018 7.02130 7.35974 7.40024 7.63503 7.70515 7.82379 8.12158 8.22296 8.79380 8.95315 9.47538 10.95518 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012826 B = 0.003561 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.484444 B = 7861.268573 C = 9108.955279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.077 3.923 3 H 0.067 0.933 4 C -0.092 4.092 5 H 0.106 0.894 6 C 0.493 3.507 7 O -0.505 6.505 8 O -0.520 6.520 9 C -0.117 4.117 10 C 0.036 3.964 11 N -0.492 5.492 12 C 0.023 3.977 13 C 0.509 3.491 14 O -0.516 6.516 15 N -0.598 5.598 16 C 0.246 3.754 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.891 5.891 21 Si 0.894 3.106 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.122 3.878 26 C -0.053 4.053 27 C 0.218 3.782 28 N -0.452 5.452 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.407 0.593 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 5.438 16.336 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.031 4.031 3 H 0.085 0.915 4 C -0.112 4.112 5 H 0.124 0.876 6 C 0.335 3.665 7 O -0.392 6.392 8 O -0.332 6.332 9 C -0.155 4.155 10 C -0.091 4.091 11 N -0.217 5.217 12 C -0.108 4.108 13 C 0.295 3.705 14 O -0.391 6.391 15 N -0.330 5.330 16 C 0.127 3.873 17 C -0.569 4.569 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.004 4.004 26 C -0.094 4.094 27 C -0.099 4.099 28 N -0.129 5.129 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.266 0.734 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.357 5.825 15.531 19.045 hybrid contribution 1.346 0.196 0.737 1.547 sum -8.011 6.021 16.268 19.107 Atomic orbital electron populations 1.22027 0.93778 1.03458 1.01968 1.22304 0.96743 0.95908 0.88191 0.91515 1.22001 0.93651 1.00058 0.95448 0.87588 1.23123 0.83275 0.82488 0.77581 1.90730 1.59279 1.22155 1.67060 1.84566 1.51569 1.52495 1.44604 1.22711 0.98915 0.97651 0.96255 1.23546 0.90054 1.00686 0.94792 1.64645 1.28264 1.24294 1.04496 1.22386 1.00924 0.94582 0.92917 1.20082 0.79798 0.87647 0.82987 1.90629 1.54931 1.15643 1.77900 1.48225 1.56847 1.08248 1.19690 1.19360 0.90842 0.93558 0.83529 1.21359 0.90907 1.35179 1.09500 0.92279 1.24913 0.98996 0.94910 0.95019 1.69902 1.35134 1.34819 1.13090 0.86626 0.85029 0.78168 0.78001 1.20158 1.21233 1.20233 1.21270 0.94903 0.81656 1.02571 1.19997 1.03621 0.81050 1.04769 1.29271 0.92890 0.95092 0.92695 1.81190 1.09368 1.12888 1.09473 0.90977 0.92157 0.91608 0.73411 0.90307 0.88685 0.85745 0.93755 0.92105 0.88204 0.93544 0.94796 0.92554 0.90954 0.89367 0.87968 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.37 37.16 0.31 -1.23 16 2 C 0.08 0.80 3.08 -66.65 -0.21 0.59 16 3 H 0.07 0.58 7.57 -51.93 -0.39 0.19 16 4 C -0.09 -0.90 3.49 -90.41 -0.32 -1.22 16 5 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 6 C 0.49 5.10 5.22 36.01 0.19 5.29 16 7 O -0.51 -6.87 15.69 -18.75 -0.29 -7.17 16 8 O -0.52 -3.88 13.04 -39.25 -0.51 -4.39 16 9 C -0.12 -1.34 6.56 -24.87 -0.16 -1.50 16 10 C 0.04 0.49 5.30 -1.90 -0.01 0.48 16 11 N -0.49 -6.52 4.89 -224.01 -1.10 -7.62 16 12 C 0.02 0.29 4.07 -4.98 -0.02 0.27 16 13 C 0.51 8.87 7.38 -10.98 -0.08 8.79 16 14 O -0.52 -11.22 13.10 5.56 0.07 -11.15 16 15 N -0.60 -10.37 2.46 -175.06 -0.43 -10.80 16 16 C 0.25 5.61 5.20 -5.19 -0.03 5.58 16 17 C -0.53 -13.14 8.92 -34.44 -0.31 -13.45 16 18 H 0.06 1.40 7.42 -52.48 -0.39 1.01 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 21 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.12 1.54 5.21 -4.04 -0.02 1.52 16 26 C -0.05 -0.62 6.03 -29.52 -0.18 -0.79 16 27 C 0.22 2.76 15.43 -20.76 -0.32 2.44 16 28 N -0.45 -6.78 18.54 42.15 0.78 -6.00 16 29 H 0.07 0.88 6.90 -51.93 -0.36 0.52 16 30 H 0.06 0.51 7.28 -51.93 -0.38 0.14 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.41 1.41 9.10 45.56 0.41 1.82 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.26 6.89 -51.93 -0.36 0.91 16 35 H 0.12 2.14 5.97 -51.93 -0.31 1.83 16 36 H 0.04 0.58 8.02 -51.93 -0.42 0.17 16 37 H 0.06 0.63 6.86 -51.93 -0.36 0.27 16 38 H 0.10 1.08 7.40 -51.93 -0.38 0.70 16 39 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 40 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 43 H 0.09 1.11 7.89 -51.93 -0.41 0.70 16 44 H 0.10 1.01 7.22 -51.93 -0.38 0.64 16 45 H 0.13 1.76 7.25 -51.93 -0.38 1.39 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -33.14 371.85 -7.03 -40.17 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.62 Total: 1.81 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.25 Total: 8.36 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.01 Total: -48.47 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.73 Total: -22.70 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.14 -7.03 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092940207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.208 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds