Wall clock time and date at job start Tue Mar 31 2020 14:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.90708 * 2 1 4 4 C 1.53994 * 109.91522 * 121.29825 * 2 1 3 5 5 H 1.08999 * 110.31213 * 239.59166 * 4 2 1 6 6 C 1.50701 * 110.30858 * 1.66855 * 4 2 1 7 7 O 1.20822 * 120.00186 * 86.69466 * 6 4 2 8 8 O 1.34228 * 120.00011 * 266.69380 * 6 4 2 9 9 C 1.54603 * 105.13756 * 120.58030 * 4 2 1 10 10 C 1.54939 * 102.91980 * 21.95657 * 9 4 2 11 11 N 1.47893 * 109.92151 * 238.89254 * 2 1 3 12 12 C 1.46900 * 111.00122 * 94.80287 * 11 2 1 13 13 C 1.50702 * 109.47111 * 170.00199 * 12 11 2 14 14 O 1.21279 * 120.00107 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99968 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99775 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47170 * 269.99621 * 16 15 13 18 18 H 1.08003 * 119.99665 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99758 * 180.02562 * 17 16 15 20 20 N 1.31504 * 120.00264 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99532 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47530 * 60.00360 * 21 19 17 23 23 H 1.48501 * 109.46789 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47206 * 299.99968 * 21 19 17 25 25 C 1.46501 * 119.99712 * 0.02562 * 15 13 12 26 26 C 1.53003 * 109.47207 * 89.99943 * 25 15 13 27 27 C 1.47199 * 109.47214 * 179.97438 * 26 25 15 28 28 N 6.92514 * 108.30981 * 318.80597 * 2 1 3 29 29 H 1.08997 * 109.46744 * 178.98850 * 1 2 3 30 30 H 1.08997 * 109.47541 * 298.99235 * 1 2 3 31 31 H 1.09006 * 109.46711 * 58.99232 * 1 2 3 32 32 H 0.96693 * 117.00407 * 180.02562 * 8 6 4 33 33 H 1.09003 * 110.72116 * 140.31758 * 9 4 2 34 34 H 1.09003 * 110.72562 * 263.42485 * 9 4 2 35 35 H 1.09005 * 110.66682 * 204.14563 * 10 9 4 36 36 H 1.09001 * 110.66488 * 81.02164 * 10 9 4 37 37 H 1.08996 * 109.46901 * 50.00309 * 12 11 2 38 38 H 1.08996 * 109.47211 * 289.99974 * 12 11 2 39 39 H 1.08994 * 109.47226 * 30.00560 * 16 15 13 40 40 H 1.09006 * 109.46490 * 150.00333 * 16 15 13 41 41 H 0.96996 * 120.00326 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.46968 * 330.00090 * 25 15 13 43 43 H 1.08997 * 109.46728 * 209.99578 * 25 15 13 44 44 H 1.09002 * 109.47291 * 300.00142 * 26 25 15 45 45 H 1.09004 * 109.46779 * 59.99463 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0546 -0.7521 1.2372 5 1 2.6699 -0.0921 1.8485 6 6 0.9045 -1.2928 2.0472 7 8 0.4331 -2.3729 1.7809 8 8 0.4038 -0.5743 3.0645 9 6 2.9059 -1.9128 0.6731 10 6 3.2681 -1.4172 -0.7495 11 7 2.0339 -0.7184 -1.1905 12 6 2.3213 0.2162 -2.2868 13 6 3.0562 -0.5084 -3.3849 14 8 3.3156 -1.6871 -3.2658 15 7 3.4254 0.1536 -4.4995 16 6 4.1403 -0.5507 -5.5667 17 6 5.6247 -0.4573 -5.3235 18 1 5.9980 0.0732 -4.4601 19 6 6.5059 -1.0492 -6.2034 20 7 6.0513 -1.6947 -7.2550 21 14 8.3458 -0.9340 -5.9014 22 1 8.6727 -1.5562 -4.5933 23 1 9.0705 -1.6468 -6.9840 24 1 8.7567 0.4929 -5.8874 25 6 3.1125 1.5776 -4.6431 26 6 4.2622 2.4122 -4.0751 27 6 3.9482 3.8429 -4.2200 28 7 3.7056 4.9472 -4.3301 29 1 -0.3633 -1.0275 -0.0181 30 1 -0.3634 0.4981 0.8988 31 1 -0.3633 0.5294 -0.8809 32 1 -0.3334 -0.9626 3.5552 33 1 3.8052 -2.0579 1.2717 34 1 2.3224 -2.8324 0.6271 35 1 3.4890 -2.2592 -1.4057 36 1 4.1097 -0.7255 -0.7132 37 1 2.9384 1.0340 -1.9147 38 1 1.3858 0.6159 -2.6781 39 1 3.8388 -1.5981 -5.5763 40 1 3.9002 -0.0946 -6.5272 41 1 6.6713 -2.1108 -7.8741 42 1 2.1956 1.8047 -4.0995 43 1 2.9779 1.8153 -5.6983 44 1 4.3970 2.1744 -3.0199 45 1 5.1793 2.1849 -4.6187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092940207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:06 Heat of formation + Delta-G solvation = -109.363895 kcal Electronic energy + Delta-G solvation = -28135.671315 eV Core-core repulsion = 24152.701347 eV Total energy + Delta-G solvation = -3982.969968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87067 -40.85639 -39.18012 -37.91308 -37.01299 -36.62078 -34.80556 -33.52948 -32.37571 -32.04429 -29.81425 -28.00216 -26.53332 -25.13020 -24.43439 -24.06102 -22.12790 -20.65035 -19.91734 -19.01797 -18.92717 -18.03225 -17.74621 -17.70372 -17.29639 -16.87000 -16.43129 -16.21103 -15.98620 -15.62848 -15.39864 -15.22356 -14.64346 -14.39404 -14.14522 -14.01049 -13.85378 -13.58923 -13.49289 -13.37892 -13.30414 -13.04431 -13.00409 -12.76773 -12.71588 -12.55872 -12.46168 -12.35418 -12.22165 -12.12799 -11.93551 -11.74992 -11.62229 -11.55558 -11.38663 -10.52490 -10.30662 -9.46039 -9.28473 -8.11596 -6.23647 1.23391 1.45432 1.48355 1.54146 1.71455 1.87655 1.98854 2.12585 2.25037 2.48489 2.97330 3.17798 3.20858 3.49451 3.53831 3.82943 4.06337 4.08653 4.20699 4.25467 4.34870 4.36822 4.40889 4.51737 4.52520 4.61069 4.72450 4.74934 4.86859 4.89739 5.01346 5.11330 5.17838 5.19526 5.26688 5.34872 5.40123 5.67469 5.69630 5.89570 5.94941 6.06006 6.17548 6.64068 6.81255 6.88848 7.06543 7.41816 7.60828 8.95611 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012826 B = 0.003561 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.484444 B = 7861.268573 C = 9108.955279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.078 3.922 3 H 0.099 0.901 4 C -0.090 4.090 5 H 0.139 0.861 6 C 0.500 3.500 7 O -0.547 6.547 8 O -0.509 6.509 9 C -0.113 4.113 10 C 0.040 3.960 11 N -0.518 5.518 12 C 0.034 3.966 13 C 0.501 3.499 14 O -0.570 6.570 15 N -0.599 5.599 16 C 0.261 3.739 17 C -0.527 4.527 18 H 0.071 0.929 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.292 1.292 24 H -0.258 1.258 25 C 0.117 3.883 26 C -0.042 4.042 27 C 0.247 3.753 28 N -0.489 5.489 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.426 0.574 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.126 0.874 39 H -0.004 1.004 40 H 0.024 0.976 41 H 0.262 0.738 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.130 0.870 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 8.504 18.890 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 H 0.117 0.883 4 C -0.109 4.109 5 H 0.157 0.843 6 C 0.343 3.657 7 O -0.437 6.437 8 O -0.323 6.323 9 C -0.151 4.151 10 C -0.088 4.088 11 N -0.243 5.243 12 C -0.096 4.096 13 C 0.290 3.710 14 O -0.448 6.448 15 N -0.330 5.330 16 C 0.140 3.860 17 C -0.566 4.566 18 H 0.089 0.911 19 C -0.191 4.191 20 N -0.573 5.573 21 Si 0.781 3.219 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.183 1.183 25 C -0.007 4.007 26 C -0.083 4.083 27 C -0.070 4.070 28 N -0.168 5.168 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.287 0.713 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.015 0.985 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.148 0.852 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.402 8.962 18.126 22.300 hybrid contribution 1.260 -0.792 -0.027 1.489 sum -8.142 8.170 18.099 21.462 Atomic orbital electron populations 1.22000 0.93697 1.01886 1.03269 1.22415 0.96708 0.97058 0.86827 0.88288 1.22054 0.93577 0.99514 0.95768 0.84312 1.23201 0.82981 0.81816 0.77660 1.90732 1.60582 1.24076 1.68328 1.84513 1.52210 1.51818 1.43730 1.22586 0.99724 0.97277 0.95521 1.23294 0.90836 0.99562 0.95077 1.64562 1.28130 1.25613 1.06015 1.22383 1.01869 0.94383 0.91001 1.21057 0.79140 0.87260 0.83583 1.90640 1.56905 1.18282 1.78995 1.48095 1.56256 1.10133 1.18547 1.18779 0.90737 0.91467 0.85047 1.21743 0.91836 1.33930 1.09107 0.91126 1.25762 1.03388 0.94917 0.94994 1.70045 1.36419 1.36446 1.14341 0.85642 0.79973 0.78914 0.77346 1.20207 1.21776 1.18278 1.21545 0.96945 0.78680 1.03547 1.19885 1.02196 0.80063 1.06130 1.29174 0.91704 0.94727 0.91385 1.81240 1.10589 1.14043 1.10886 0.93958 0.90362 0.90798 0.71286 0.88373 0.91513 0.90343 0.92900 0.88468 0.85628 0.98549 0.95777 0.92872 0.86894 0.89587 0.85187 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.37 71.98 0.60 -1.96 16 2 C 0.08 1.32 3.08 45.06 0.14 1.46 16 3 H 0.10 1.11 7.57 -2.38 -0.02 1.09 16 4 C -0.09 -1.49 3.49 -10.66 -0.04 -1.53 16 5 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 6 C 0.50 9.29 5.22 71.24 0.37 9.66 16 7 O -0.55 -14.73 15.69 21.98 0.34 -14.39 16 8 O -0.51 -5.93 13.04 -51.40 -0.67 -6.60 16 9 C -0.11 -2.48 6.56 31.80 0.21 -2.27 16 10 C 0.04 1.07 5.30 86.65 0.46 1.53 16 11 N -0.52 -12.74 4.89 -862.63 -4.22 -16.96 16 12 C 0.03 0.75 4.07 85.56 0.35 1.10 16 13 C 0.50 17.13 7.38 87.66 0.65 17.78 16 14 O -0.57 -25.85 13.10 -3.03 -0.04 -25.89 16 15 N -0.60 -20.34 2.46 -826.15 -2.03 -22.37 16 16 C 0.26 12.29 5.20 85.63 0.45 12.73 16 17 C -0.53 -26.36 8.92 25.60 0.23 -26.14 16 18 H 0.07 3.29 7.42 -2.91 -0.02 3.26 16 19 C 0.01 0.43 5.46 84.66 0.46 0.89 16 20 N -0.93 -53.63 13.29 21.45 0.28 -53.35 16 21 Si 0.96 41.67 29.54 68.60 2.03 43.70 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 C 0.12 2.62 5.21 86.38 0.45 3.07 16 26 C -0.04 -0.82 6.03 28.79 0.17 -0.65 16 27 C 0.25 5.44 15.43 89.44 1.38 6.82 16 28 N -0.49 -13.41 18.54 20.01 0.37 -13.04 16 29 H 0.04 0.98 6.90 -2.39 -0.02 0.97 16 30 H 0.08 1.04 7.28 -2.39 -0.02 1.02 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.43 1.73 9.10 -74.06 -0.67 1.06 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.85 6.89 -2.39 -0.02 1.83 16 35 H 0.08 2.88 5.97 -2.38 -0.01 2.86 16 36 H 0.05 1.30 8.02 -2.39 -0.02 1.28 16 37 H 0.10 1.45 6.86 -2.39 -0.02 1.43 16 38 H 0.13 2.13 7.40 -2.39 -0.02 2.12 16 39 H 0.00 -0.21 7.42 -2.39 -0.02 -0.22 16 40 H 0.02 1.17 7.89 -2.38 -0.02 1.15 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.11 1.66 6.44 -2.39 -0.02 1.65 16 43 H 0.09 1.99 7.89 -2.39 -0.02 1.98 16 44 H 0.13 1.91 7.22 -2.39 -0.02 1.90 16 45 H 0.11 2.79 7.25 -2.38 -0.02 2.77 16 Total: -1.00 -77.81 371.85 2.30 -75.51 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.36 Total: 10.89 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 5.88 Total: 22.49 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -5.59 Total: -105.72 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.37 Total: -46.87 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -77.81 2.30 -75.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092940207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.854 kcal (2) G-P(sol) polarization free energy of solvation -77.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds