Wall clock time and date at job start Tue Mar 31 2020 14:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47152 * 2 1 4 4 C 1.34778 * 119.99795 * 179.97438 * 3 2 1 5 5 O 1.21539 * 120.00141 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99817 * 179.97438 * 4 3 2 7 7 C 1.34778 * 119.99817 * 180.02562 * 6 4 3 8 8 O 1.21234 * 120.00182 * 0.02562 * 7 6 4 9 9 C 1.50705 * 119.99657 * 180.02562 * 7 6 4 10 10 H 1.08996 * 109.47127 * 41.62007 * 9 7 6 11 11 C 1.52997 * 109.47276 * 281.61648 * 9 7 6 12 12 N 1.46900 * 109.46584 * 161.61565 * 9 7 6 13 13 C 1.46895 * 111.00301 * 65.21491 * 12 9 7 14 14 C 1.50696 * 109.47740 * 169.99680 * 13 12 9 15 15 H 1.08004 * 119.99209 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00481 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99577 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00180 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46888 * 59.99588 * 18 16 14 20 20 H 1.48498 * 109.47335 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47173 * 300.00011 * 18 16 14 22 22 C 1.46900 * 111.00435 * 301.25482 * 12 9 7 23 23 C 1.50695 * 109.47232 * 289.13809 * 22 12 9 24 24 C 1.34517 * 125.78967 * 94.84237 * 23 22 12 25 25 C 1.41381 * 106.84001 * 180.02562 * 24 23 22 26 26 C 1.34509 * 106.84355 * 359.97438 * 25 24 23 27 27 O 1.34299 * 108.41850 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47448 * 60.00372 * 1 2 3 29 29 H 1.09001 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47469 * 299.99794 * 1 2 3 31 31 H 1.09003 * 109.47016 * 239.99985 * 2 1 3 32 32 H 1.09000 * 109.47088 * 120.00020 * 2 1 3 33 33 H 0.97005 * 120.00074 * 359.97438 * 3 2 1 34 34 H 0.96997 * 119.99946 * 0.02562 * 6 4 3 35 35 H 1.08998 * 109.46821 * 300.00239 * 11 9 7 36 36 H 1.09000 * 109.47222 * 59.99853 * 11 9 7 37 37 H 1.09001 * 109.47071 * 180.02562 * 11 9 7 38 38 H 1.09001 * 109.47112 * 289.99852 * 13 12 9 39 39 H 1.09003 * 109.47282 * 49.99071 * 13 12 9 40 40 H 0.97005 * 119.99455 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.47415 * 169.13642 * 22 12 9 42 42 H 1.09003 * 109.46779 * 49.13739 * 22 12 9 43 43 H 1.08000 * 126.57855 * 0.05266 * 24 23 22 44 44 H 1.08007 * 126.58102 * 179.97438 * 25 24 23 45 45 H 1.08000 * 125.79375 * 180.26030 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1332 0.7036 0.0005 6 7 3.7927 2.8981 0.0000 7 6 5.1178 3.1443 0.0000 8 8 5.9056 2.2228 0.0000 9 6 5.6201 4.5652 0.0000 10 1 5.0169 5.1638 0.6825 11 6 5.5163 5.1429 -1.4129 12 7 7.0224 4.5886 0.4368 13 6 7.8860 3.8945 -0.5277 14 6 9.3307 4.1468 -0.1810 15 1 9.5821 4.7617 0.6706 16 6 10.3314 3.5935 -0.9514 17 7 10.0250 2.8452 -1.9885 18 14 12.1221 3.9068 -0.5220 19 1 12.3994 3.3984 0.8456 20 1 12.9951 3.2050 -1.4969 21 1 12.3954 5.3655 -0.5726 22 6 7.1650 4.0128 1.7807 23 6 6.5663 4.9519 2.7958 24 6 5.3141 4.8890 3.2832 25 6 5.1779 5.9555 4.2014 26 6 6.3551 6.6060 4.2205 27 8 7.1921 5.9939 3.3671 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3880 2.1185 -0.0004 34 1 3.1624 3.6354 -0.0004 35 1 6.1195 4.5442 -2.0954 36 1 4.4757 5.1254 -1.7370 37 1 5.8800 6.1704 -1.4130 38 1 7.6850 2.8239 -0.4905 39 1 7.6828 4.2676 -1.5315 40 1 10.7291 2.4556 -2.5303 41 1 8.2219 3.8643 2.0022 42 1 6.6470 3.0546 1.8222 43 1 4.5581 4.1628 3.0235 44 1 4.2976 6.2008 4.7770 45 1 6.5889 7.4713 4.8231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096970527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:39 Heat of formation + Delta-G solvation = -26.367554 kcal Electronic energy + Delta-G solvation = -28470.129590 eV Core-core repulsion = 24490.758614 eV Total energy + Delta-G solvation = -3979.370977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22922 -41.06433 -38.96546 -36.29935 -35.17849 -34.41209 -32.77126 -32.51425 -31.51604 -30.52640 -29.36048 -26.84917 -24.92157 -24.54117 -23.16149 -21.94644 -21.40320 -20.72365 -20.23227 -19.83575 -18.46287 -17.23410 -16.91704 -16.26435 -16.10966 -15.72226 -15.50558 -15.13416 -14.94464 -14.57285 -14.36253 -13.95203 -13.87722 -13.78827 -13.20913 -12.81933 -12.70403 -12.54270 -12.43024 -12.11879 -12.06813 -11.92046 -11.80455 -11.67636 -11.30266 -11.04276 -10.79087 -10.69730 -10.55508 -10.27863 -9.82923 -9.76246 -9.65069 -9.55239 -9.22277 -9.15869 -8.35179 -8.16917 -7.26056 -5.91810 -3.92766 2.06647 2.37317 2.45352 2.86023 3.38056 3.40882 3.44460 3.46811 3.47779 3.94146 4.47363 4.67794 4.69457 4.81079 4.92556 5.03706 5.07767 5.26351 5.33879 5.40381 5.44803 5.46829 5.51306 5.63969 5.69162 5.86221 5.88116 6.05834 6.11685 6.21774 6.22346 6.26684 6.29028 6.52734 6.55391 6.62992 6.78942 7.12988 7.51740 7.53106 7.62250 7.81168 7.98232 8.18506 8.38814 8.47644 8.56981 9.13807 9.69128 11.18556 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.004426 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.388394 B = 6324.848491 C = 8378.251531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 N -0.744 5.744 4 C 0.688 3.312 5 O -0.529 6.529 6 N -0.695 5.695 7 C 0.480 3.520 8 O -0.441 6.441 9 C 0.067 3.933 10 H 0.097 0.903 11 C -0.142 4.142 12 N -0.498 5.498 13 C 0.169 3.831 14 C -0.512 4.512 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.117 3.883 23 C 0.031 3.969 24 C -0.233 4.233 25 C -0.215 4.215 26 C -0.054 4.054 27 O -0.163 6.163 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.261 0.739 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.483 3.864 6.698 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.005 3.995 3 N -0.403 5.403 4 C 0.388 3.612 5 O -0.400 6.400 6 N -0.362 5.362 7 C 0.264 3.736 8 O -0.306 6.306 9 C -0.047 4.047 10 H 0.115 0.885 11 C -0.200 4.200 12 N -0.221 5.221 13 C 0.046 3.954 14 C -0.551 4.551 15 H 0.080 0.920 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.011 4.011 23 C -0.021 4.021 24 C -0.253 4.253 25 C -0.234 4.234 26 C -0.122 4.122 27 O -0.058 6.058 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.229 0.771 34 H 0.238 0.762 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.090 0.910 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.600 2.858 6.485 20.842 hybrid contribution -0.397 0.116 0.296 0.508 sum -19.997 2.974 6.780 21.323 Atomic orbital electron populations 1.22004 0.94359 1.03288 1.02459 1.21195 0.93824 0.81735 1.02704 1.45356 1.05196 1.09318 1.80468 1.16356 0.82867 0.83612 0.78408 1.91091 1.54272 1.42533 1.52104 1.44728 1.10429 1.07941 1.73128 1.23150 0.80411 0.94484 0.75512 1.90877 1.52944 1.46363 1.40444 1.22114 0.93534 0.89383 0.99669 0.88515 1.21865 1.01184 1.02988 0.93950 1.62638 1.01811 1.55378 1.02238 1.20283 0.90524 0.94740 0.89885 1.21102 0.90230 1.30639 1.13120 0.92050 1.24931 0.99055 0.95203 0.95135 1.69965 1.32873 1.33174 1.17237 0.86603 0.84676 0.78273 0.78088 1.20303 1.21428 1.20256 1.20749 1.03536 0.91082 0.85693 1.22909 0.92024 0.89669 0.97490 1.21470 0.97355 1.02904 1.03608 1.21680 0.99215 0.98712 1.03798 1.23933 0.89903 1.00711 0.97695 1.84112 1.40619 1.35758 1.45278 0.91949 0.90657 0.91990 0.91402 0.91459 0.77071 0.76223 0.90476 0.92750 0.90244 0.94293 0.94314 0.92948 0.87268 0.91049 0.84558 0.84111 0.78732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.03 37.16 0.37 -0.48 16 2 C 0.13 1.16 6.39 -4.04 -0.03 1.14 16 3 N -0.74 -7.22 5.56 -65.24 -0.36 -7.58 16 4 C 0.69 10.36 8.50 -86.92 -0.74 9.62 16 5 O -0.53 -11.21 14.74 -18.47 -0.27 -11.48 16 6 N -0.69 -9.18 5.24 -15.78 -0.08 -9.26 16 7 C 0.48 8.64 6.01 -10.98 -0.07 8.57 16 8 O -0.44 -10.55 10.56 -18.21 -0.19 -10.74 16 9 C 0.07 1.12 2.65 -68.86 -0.18 0.94 16 10 H 0.10 1.37 6.79 -51.93 -0.35 1.01 16 11 C -0.14 -2.16 8.80 37.16 0.33 -1.83 16 12 N -0.50 -10.59 4.49 -230.92 -1.04 -11.63 16 13 C 0.17 4.45 3.95 -4.98 -0.02 4.43 16 14 C -0.51 -14.65 8.30 -34.44 -0.29 -14.94 16 15 H 0.06 1.74 7.24 -52.48 -0.38 1.36 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 18 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.12 2.42 5.04 -4.98 -0.03 2.39 16 23 C 0.03 0.55 6.24 -35.63 -0.22 0.33 16 24 C -0.23 -3.49 9.90 -39.70 -0.39 -3.88 16 25 C -0.21 -2.77 10.91 -39.71 -0.43 -3.20 16 26 C -0.05 -0.72 12.09 29.41 0.36 -0.37 16 27 O -0.16 -2.86 10.65 5.73 0.06 -2.80 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 2.30 8.49 -40.82 -0.35 1.96 16 34 H 0.40 3.26 8.71 -40.82 -0.36 2.91 16 35 H 0.08 1.42 6.12 -51.93 -0.32 1.10 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.04 1.16 5.55 -51.93 -0.29 0.87 16 39 H 0.04 1.06 5.67 -51.93 -0.29 0.77 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.11 2.50 6.59 -51.93 -0.34 2.15 16 42 H 0.07 1.54 5.76 -51.93 -0.30 1.24 16 43 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 45 H 0.20 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -38.62 370.07 -8.37 -46.99 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.34 Total: 5.97 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.43 Total: 4.32 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.75 Total: -55.13 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.40 Total: -25.03 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.62 -8.37 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096970527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.623 kcal (2) G-P(sol) polarization free energy of solvation -38.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds