Wall clock time and date at job start Tue Mar 31 2020 14:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47152 * 2 1 4 4 C 1.34778 * 119.99795 * 179.97438 * 3 2 1 5 5 O 1.21539 * 120.00141 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99817 * 179.97438 * 4 3 2 7 7 C 1.34778 * 119.99817 * 180.02562 * 6 4 3 8 8 O 1.21234 * 120.00182 * 0.02562 * 7 6 4 9 9 C 1.50705 * 119.99657 * 180.02562 * 7 6 4 10 10 H 1.08996 * 109.47127 * 41.62007 * 9 7 6 11 11 C 1.52997 * 109.47276 * 281.61648 * 9 7 6 12 12 N 1.46900 * 109.46584 * 161.61565 * 9 7 6 13 13 C 1.46895 * 111.00301 * 65.21491 * 12 9 7 14 14 C 1.50696 * 109.47740 * 169.99680 * 13 12 9 15 15 H 1.08004 * 119.99209 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00481 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99577 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00180 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46888 * 59.99588 * 18 16 14 20 20 H 1.48498 * 109.47335 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47173 * 300.00011 * 18 16 14 22 22 C 1.46900 * 111.00435 * 301.25482 * 12 9 7 23 23 C 1.50695 * 109.47232 * 289.13809 * 22 12 9 24 24 C 1.34517 * 125.78967 * 94.84237 * 23 22 12 25 25 C 1.41381 * 106.84001 * 180.02562 * 24 23 22 26 26 C 1.34509 * 106.84355 * 359.97438 * 25 24 23 27 27 O 1.34299 * 108.41850 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47448 * 60.00372 * 1 2 3 29 29 H 1.09001 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47469 * 299.99794 * 1 2 3 31 31 H 1.09003 * 109.47016 * 239.99985 * 2 1 3 32 32 H 1.09000 * 109.47088 * 120.00020 * 2 1 3 33 33 H 0.97005 * 120.00074 * 359.97438 * 3 2 1 34 34 H 0.96997 * 119.99946 * 0.02562 * 6 4 3 35 35 H 1.08998 * 109.46821 * 300.00239 * 11 9 7 36 36 H 1.09000 * 109.47222 * 59.99853 * 11 9 7 37 37 H 1.09001 * 109.47071 * 180.02562 * 11 9 7 38 38 H 1.09001 * 109.47112 * 289.99852 * 13 12 9 39 39 H 1.09003 * 109.47282 * 49.99071 * 13 12 9 40 40 H 0.97005 * 119.99455 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.47415 * 169.13642 * 22 12 9 42 42 H 1.09003 * 109.46779 * 49.13739 * 22 12 9 43 43 H 1.08000 * 126.57855 * 0.05266 * 24 23 22 44 44 H 1.08007 * 126.58102 * 179.97438 * 25 24 23 45 45 H 1.08000 * 125.79375 * 180.26030 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1332 0.7036 0.0005 6 7 3.7927 2.8981 0.0000 7 6 5.1178 3.1443 0.0000 8 8 5.9056 2.2228 0.0000 9 6 5.6201 4.5652 0.0000 10 1 5.0169 5.1638 0.6825 11 6 5.5163 5.1429 -1.4129 12 7 7.0224 4.5886 0.4368 13 6 7.8860 3.8945 -0.5277 14 6 9.3307 4.1468 -0.1810 15 1 9.5821 4.7617 0.6706 16 6 10.3314 3.5935 -0.9514 17 7 10.0250 2.8452 -1.9885 18 14 12.1221 3.9068 -0.5220 19 1 12.3994 3.3984 0.8456 20 1 12.9951 3.2050 -1.4969 21 1 12.3954 5.3655 -0.5726 22 6 7.1650 4.0128 1.7807 23 6 6.5663 4.9519 2.7958 24 6 5.3141 4.8890 3.2832 25 6 5.1779 5.9555 4.2014 26 6 6.3551 6.6060 4.2205 27 8 7.1921 5.9939 3.3671 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3880 2.1185 -0.0004 34 1 3.1624 3.6354 -0.0004 35 1 6.1195 4.5442 -2.0954 36 1 4.4757 5.1254 -1.7370 37 1 5.8800 6.1704 -1.4130 38 1 7.6850 2.8239 -0.4905 39 1 7.6828 4.2676 -1.5315 40 1 10.7291 2.4556 -2.5303 41 1 8.2219 3.8643 2.0022 42 1 6.6470 3.0546 1.8222 43 1 4.5581 4.1628 3.0235 44 1 4.2976 6.2008 4.7770 45 1 6.5889 7.4713 4.8231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096970527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:38 Heat of formation + Delta-G solvation = -57.521912 kcal Electronic energy + Delta-G solvation = -28471.480544 eV Core-core repulsion = 24490.758614 eV Total energy + Delta-G solvation = -3980.721931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.43083 -42.40843 -40.34786 -37.80682 -36.29922 -35.80681 -34.77842 -33.86290 -32.85914 -31.41387 -30.84939 -28.63027 -26.25511 -26.10825 -24.40998 -23.27559 -22.55166 -22.07319 -21.51432 -21.18349 -19.67112 -18.82550 -18.41272 -17.82121 -17.32006 -17.11890 -16.75064 -16.54013 -16.38134 -16.03260 -15.66059 -15.45432 -15.35803 -14.98140 -14.67143 -14.31774 -14.04082 -13.64667 -13.56511 -13.36325 -13.30989 -13.10103 -12.97834 -12.74486 -12.69248 -12.62780 -12.48415 -12.39759 -12.19082 -12.10766 -11.58012 -11.33539 -11.22598 -11.06240 -10.76087 -10.57440 -10.18150 -9.38117 -9.01814 -8.16596 -6.25585 0.86577 0.98660 1.32738 1.37950 1.42070 1.49719 1.77296 2.18398 2.22367 2.40620 2.90812 3.12532 3.18321 3.70574 3.89003 4.03729 4.09893 4.11865 4.20110 4.21964 4.24594 4.36012 4.51952 4.63410 4.76836 4.84366 4.86148 4.98548 5.04277 5.06025 5.06796 5.23455 5.24689 5.27729 5.28477 5.36250 5.51607 5.56246 5.62539 5.72151 6.03372 6.12874 6.34243 6.45960 6.62281 6.88551 7.15194 7.35287 7.41097 8.93911 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.004426 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.388394 B = 6324.848491 C = 8378.251531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.123 3.877 3 N -0.715 5.715 4 C 0.683 3.317 5 O -0.595 6.595 6 N -0.671 5.671 7 C 0.486 3.514 8 O -0.506 6.506 9 C 0.069 3.931 10 H 0.136 0.864 11 C -0.138 4.138 12 N -0.502 5.502 13 C 0.190 3.810 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.264 1.264 22 C 0.130 3.870 23 C -0.010 4.010 24 C -0.212 4.212 25 C -0.212 4.212 26 C -0.047 4.047 27 O -0.193 6.193 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.420 0.580 34 H 0.432 0.568 35 H 0.035 0.965 36 H 0.104 0.896 37 H 0.086 0.914 38 H -0.002 1.002 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.149 0.851 44 H 0.179 0.821 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.669 6.524 8.422 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.001 4.001 3 N -0.374 5.374 4 C 0.383 3.617 5 O -0.471 6.471 6 N -0.340 5.340 7 C 0.272 3.728 8 O -0.376 6.376 9 C -0.044 4.044 10 H 0.154 0.846 11 C -0.195 4.195 12 N -0.225 5.225 13 C 0.065 3.935 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.188 1.188 22 C 0.002 3.998 23 C -0.061 4.061 24 C -0.232 4.232 25 C -0.230 4.230 26 C -0.114 4.114 27 O -0.089 6.089 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.258 0.742 34 H 0.272 0.728 35 H 0.054 0.946 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.016 0.984 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.167 0.833 44 H 0.197 0.803 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -22.922 5.593 8.223 24.986 hybrid contribution 0.411 -0.681 -0.153 0.810 sum -22.511 4.911 8.070 24.413 Atomic orbital electron populations 1.21942 0.90629 1.04447 1.03771 1.21354 0.96653 0.80800 1.01250 1.45168 1.03431 1.10748 1.78065 1.16620 0.84011 0.83110 0.77922 1.91065 1.56459 1.44542 1.55063 1.44226 1.09417 1.08643 1.71675 1.23227 0.81384 0.94149 0.74071 1.90878 1.55084 1.48136 1.43529 1.22306 0.91359 0.89248 1.01501 0.84625 1.21875 1.03662 1.02154 0.91851 1.62499 1.04055 1.54229 1.01670 1.19762 0.90741 0.92613 0.90433 1.21464 0.91907 1.30294 1.12795 0.92415 1.25862 1.03930 0.94858 0.94938 1.70117 1.34309 1.34388 1.18467 0.85502 0.78843 0.78764 0.77894 1.19814 1.20775 1.18845 1.20330 1.01226 0.91820 0.86440 1.22292 0.93306 0.91172 0.99331 1.21706 0.95990 1.02992 1.02528 1.22068 1.00385 0.97348 1.03238 1.24893 0.89441 1.00901 0.96135 1.84070 1.42183 1.36119 1.46512 0.90661 0.89641 0.90525 0.93153 0.92921 0.74204 0.72816 0.94604 0.87711 0.89551 0.98414 0.96005 0.92924 0.91136 0.92780 0.83288 0.80335 0.74670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.03 71.98 0.72 -0.40 16 2 C 0.12 2.10 6.39 86.38 0.55 2.66 16 3 N -0.71 -12.58 5.56 -478.59 -2.66 -15.24 16 4 C 0.68 20.51 8.50 179.05 1.52 22.03 16 5 O -0.60 -26.60 14.74 18.92 0.28 -26.32 16 6 N -0.67 -16.99 5.24 -440.52 -2.31 -19.30 16 7 C 0.49 17.93 6.01 87.66 0.53 18.46 16 8 O -0.51 -26.10 10.56 19.87 0.21 -25.89 16 9 C 0.07 2.30 2.65 44.17 0.12 2.42 16 10 H 0.14 3.47 6.79 -2.39 -0.02 3.46 16 11 C -0.14 -4.10 8.80 71.98 0.63 -3.46 16 12 N -0.50 -22.39 4.49 -884.49 -3.97 -26.36 16 13 C 0.19 10.71 3.95 85.56 0.34 11.05 16 14 C -0.53 -31.84 8.30 25.60 0.21 -31.63 16 15 H 0.06 3.44 7.24 -2.91 -0.02 3.42 16 16 C 0.00 0.12 5.46 84.66 0.46 0.58 16 17 N -0.93 -60.13 13.29 21.45 0.28 -59.84 16 18 Si 0.97 47.36 29.54 68.60 2.03 49.39 16 19 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 22 C 0.13 5.69 5.04 85.56 0.43 6.13 16 23 C -0.01 -0.36 6.24 24.83 0.15 -0.21 16 24 C -0.21 -5.82 9.90 22.19 0.22 -5.60 16 25 C -0.21 -4.53 10.91 22.19 0.24 -4.29 16 26 C -0.05 -1.08 12.09 66.97 0.81 -0.27 16 27 O -0.19 -6.59 10.65 -2.43 -0.03 -6.61 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.42 3.35 8.49 -92.70 -0.79 2.57 16 34 H 0.43 5.49 8.71 -92.71 -0.81 4.69 16 35 H 0.03 1.37 6.12 -2.39 -0.01 1.35 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.00 -0.12 5.55 -2.39 -0.01 -0.14 16 39 H 0.02 1.30 5.67 -2.39 -0.01 1.28 16 40 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 41 H 0.07 3.54 6.59 -2.39 -0.02 3.52 16 42 H 0.05 2.53 5.76 -2.39 -0.01 2.51 16 43 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 44 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 45 H 0.24 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -94.86 370.07 0.22 -94.64 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.56 Total: 18.08 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.94 Total: 17.47 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -8.65 Total: -120.75 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: 0.46 Total: -58.83 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -94.86 0.22 -94.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096970527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.117 kcal (2) G-P(sol) polarization free energy of solvation -94.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds