Wall clock time and date at job start Tue Mar 31 2020 14:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46880 * 2 1 4 4 O 1.42902 * 109.46871 * 119.99586 * 2 1 3 5 5 C 1.42892 * 114.00432 * 270.00255 * 4 2 1 6 6 C 1.53001 * 109.47472 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.81960 * 305.56825 * 6 5 4 8 8 C 1.54377 * 109.83096 * 184.58475 * 6 5 4 9 9 C 1.55308 * 102.25186 * 219.12645 * 8 6 5 10 10 C 1.54945 * 100.93986 * 34.13324 * 9 8 6 11 11 O 1.43237 * 109.83178 * 66.44957 * 6 5 4 12 12 C 1.50695 * 109.47036 * 239.99778 * 2 1 3 13 13 O 1.21291 * 119.99982 * 245.00110 * 12 2 1 14 14 N 1.34778 * 119.99996 * 65.00673 * 12 2 1 15 15 C 1.40159 * 119.99905 * 180.02562 * 14 12 2 16 16 C 1.40411 * 125.97546 * 0.02562 * 15 14 12 17 17 C 1.35234 * 107.86728 * 179.76622 * 16 15 14 18 18 N 1.34970 * 107.86531 * 0.38220 * 17 16 15 19 19 C 1.46491 * 125.97934 * 179.87401 * 18 17 16 20 20 C 1.50702 * 109.46957 * 124.71857 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 N 1.31223 * 125.97358 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.46981 * 300.00554 * 1 2 3 30 30 H 1.08998 * 109.46890 * 59.99656 * 1 2 3 31 31 H 1.08992 * 109.47025 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46981 * 299.99726 * 5 4 2 33 33 H 1.08994 * 109.47215 * 59.99769 * 5 4 2 34 34 H 1.09001 * 110.85198 * 337.31850 * 8 6 5 35 35 H 1.09003 * 110.84912 * 100.94259 * 8 6 5 36 36 H 1.09001 * 111.12836 * 276.21631 * 9 8 6 37 37 H 1.08999 * 111.12915 * 152.05290 * 9 8 6 38 38 H 1.09001 * 110.30825 * 204.63827 * 10 9 8 39 39 H 1.09002 * 110.39009 * 82.51389 * 10 9 8 40 40 H 0.96998 * 119.99867 * 359.97438 * 14 12 2 41 41 H 1.07999 * 126.06561 * 359.97438 * 16 15 14 42 42 H 1.08004 * 126.07194 * 180.24670 * 17 16 15 43 43 H 1.09004 * 109.47166 * 4.72123 * 19 18 17 44 44 H 1.08994 * 109.47507 * 244.71829 * 19 18 17 45 45 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2000 0.1829 2.2941 6 6 2.7090 -0.6405 3.4789 7 1 2.0300 -1.4715 3.6703 8 6 2.8116 0.2540 4.7329 9 6 4.1236 -0.2519 5.3922 10 6 4.9634 -0.6088 4.1400 11 8 4.0209 -1.1405 3.1954 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7468 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 2.2587 -0.8552 -3.5963 16 6 2.9854 -2.0565 -3.6163 17 6 3.2417 -2.3650 -4.9078 18 7 2.7075 -1.3948 -5.6791 19 6 2.7565 -1.3336 -7.1419 20 6 1.3563 -1.2162 -7.6869 21 1 0.5143 -1.1894 -7.0111 22 6 1.1507 -1.1367 -9.0480 23 7 -0.0708 -1.0288 -9.5233 24 14 2.6071 -1.1824 -10.2168 25 1 2.8957 -2.5896 -10.5932 26 1 2.2871 -0.3991 -11.4372 27 1 3.7963 -0.5947 -9.5491 28 7 2.0930 -0.4597 -4.8365 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.9320 0.9513 2.0451 33 1 1.2538 0.6547 2.5588 34 1 2.8975 1.3043 4.4542 35 1 1.9592 0.0953 5.3935 36 1 3.9400 -1.1336 6.0064 37 1 4.6008 0.5370 5.9735 38 1 5.7138 -1.3591 4.3890 39 1 5.4412 0.2838 3.7361 40 1 1.2954 0.6345 -2.5391 41 1 3.2835 -2.6337 -2.7535 42 1 3.7804 -3.2325 -5.2595 43 1 3.2218 -2.2405 -7.5282 44 1 3.3401 -0.4662 -7.4500 45 1 -0.2154 -0.9732 -10.4808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:33 Heat of formation + Delta-G solvation = -64.173545 kcal Electronic energy + Delta-G solvation = -26604.914308 eV Core-core repulsion = 22623.903941 eV Total energy + Delta-G solvation = -3981.010367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.28807 -40.97819 -40.39438 -38.50790 -36.26639 -35.25037 -33.55450 -33.12839 -32.51988 -31.10970 -30.85656 -29.01185 -26.67672 -25.69254 -24.31878 -22.88755 -22.55173 -22.14829 -21.72965 -20.89448 -19.11942 -18.55267 -18.24249 -17.93308 -17.70573 -17.00182 -16.89765 -16.57473 -16.14194 -16.05944 -15.75750 -15.40298 -14.93104 -14.83699 -14.48766 -14.36848 -14.21411 -13.88273 -13.85189 -13.62517 -13.38276 -13.00840 -12.95243 -12.64477 -12.55759 -12.40599 -12.32601 -12.17426 -12.06633 -11.83418 -11.68764 -11.63640 -11.47336 -10.99398 -10.87004 -10.54622 -10.45339 -9.80289 -9.14448 -8.37564 -6.47849 0.88125 1.18436 1.36539 1.40138 1.40982 1.49721 2.12118 2.17393 2.29007 2.73175 2.94852 3.00261 3.44933 3.58075 3.82257 3.87889 3.92964 3.96906 4.05521 4.18259 4.19135 4.26940 4.39949 4.47645 4.59089 4.63927 4.69844 4.73012 4.78367 4.81941 4.85668 4.87767 4.91498 4.95795 5.05682 5.10927 5.19274 5.24029 5.27570 5.84494 5.96533 5.99306 6.17430 6.28912 6.39348 6.57731 6.94551 7.06935 7.14963 8.79440 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.002028 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.001807 B =13805.915865 C =14359.694548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 H 0.124 0.876 4 O -0.380 6.380 5 C 0.044 3.956 6 C 0.072 3.928 7 H 0.078 0.922 8 C -0.139 4.139 9 C -0.149 4.149 10 C 0.034 3.966 11 O -0.406 6.406 12 C 0.515 3.485 13 O -0.536 6.536 14 N -0.621 5.621 15 C 0.266 3.734 16 C -0.299 4.299 17 C 0.063 3.937 18 N -0.343 5.343 19 C 0.239 3.761 20 C -0.547 4.547 21 H 0.027 0.973 22 C 0.014 3.986 23 N -0.941 5.941 24 Si 0.956 3.044 25 H -0.254 1.254 26 H -0.280 1.280 27 H -0.239 1.239 28 N -0.343 5.343 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.426 0.574 41 H 0.162 0.838 42 H 0.211 0.789 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.292 6.208 29.948 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 H 0.141 0.859 4 O -0.299 6.299 5 C -0.032 4.032 6 C 0.015 3.985 7 H 0.096 0.904 8 C -0.176 4.176 9 C -0.187 4.187 10 C -0.042 4.042 11 O -0.327 6.327 12 C 0.302 3.698 13 O -0.410 6.410 14 N -0.272 5.272 15 C 0.011 3.989 16 C -0.330 4.330 17 C -0.085 4.085 18 N -0.125 5.125 19 C 0.119 3.881 20 C -0.585 4.585 21 H 0.045 0.955 22 C -0.185 4.185 23 N -0.580 5.580 24 Si 0.776 3.224 25 H -0.178 1.178 26 H -0.206 1.206 27 H -0.163 1.163 28 N -0.174 5.174 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.264 0.736 41 H 0.180 0.820 42 H 0.228 0.772 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.229 6.043 28.879 30.377 hybrid contribution 0.002 -0.055 -0.433 0.436 sum 7.231 5.988 28.447 29.956 Atomic orbital electron populations 1.22285 0.91185 1.03644 1.05439 1.21869 0.96337 0.96543 0.82810 0.85869 1.88081 1.86786 1.35411 1.19633 1.23336 1.01301 0.92870 0.85661 1.22957 0.84981 0.96918 0.93674 0.90380 1.23124 0.99722 1.00193 0.94607 1.23272 0.95196 1.02912 0.97293 1.23624 0.92686 0.99150 0.88751 1.88577 1.18064 1.70785 1.55225 1.21389 0.78927 0.85395 0.84138 1.90643 1.39711 1.24460 1.86186 1.42511 1.55667 1.27160 1.01886 1.19464 0.98187 0.94227 0.87005 1.21741 1.12895 1.00649 0.97698 1.23225 0.99253 0.95515 0.90555 1.48528 1.40209 1.16624 1.07125 1.19911 0.97293 0.99799 0.71086 1.21225 0.91760 1.52755 0.92789 0.95494 1.25922 0.99555 0.93219 0.99756 1.70047 1.23183 1.50255 1.14500 0.85613 0.78952 0.79870 0.77919 1.17827 1.20556 1.16260 1.77305 1.23703 1.17540 0.98806 0.87967 0.89434 0.92756 0.92177 0.88725 0.88713 0.87666 0.90040 0.87632 0.89634 0.91879 0.73624 0.82045 0.77231 0.90060 0.93523 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.09 1.74 3.13 29.85 0.09 1.83 16 3 H 0.12 1.62 7.79 -2.39 -0.02 1.60 16 4 O -0.38 -9.36 9.51 -126.43 -1.20 -10.56 16 5 C 0.04 0.69 5.28 71.98 0.38 1.07 16 6 C 0.07 1.18 3.81 31.06 0.12 1.30 16 7 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 8 C -0.14 -1.07 6.54 31.85 0.21 -0.86 16 9 C -0.15 -1.21 7.16 32.05 0.23 -0.98 16 10 C 0.03 0.50 7.78 72.65 0.56 1.06 16 11 O -0.41 -9.55 11.00 -146.53 -1.61 -11.16 16 12 C 0.51 15.84 7.15 87.66 0.63 16.47 16 13 O -0.54 -21.37 13.64 15.92 0.22 -21.16 16 14 N -0.62 -19.55 5.41 -307.51 -1.66 -21.22 16 15 C 0.27 10.98 8.11 133.32 1.08 12.07 16 16 C -0.30 -12.14 9.61 22.11 0.21 -11.93 16 17 C 0.06 2.42 11.43 83.52 0.96 3.38 16 18 N -0.34 -15.74 3.67 -351.86 -1.29 -17.03 16 19 C 0.24 11.20 5.33 85.64 0.46 11.65 16 20 C -0.55 -31.81 9.79 25.60 0.25 -31.56 16 21 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 22 C 0.01 0.82 5.47 84.66 0.46 1.28 16 23 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 24 Si 0.96 40.90 27.47 68.60 1.88 42.79 16 25 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 28 N -0.34 -16.21 12.42 -54.45 -0.68 -16.89 16 29 H 0.10 0.93 7.87 -2.39 -0.02 0.91 16 30 H 0.09 1.13 7.92 -2.39 -0.02 1.11 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.85 8.09 -2.38 -0.02 0.83 16 33 H 0.09 0.79 7.87 -2.39 -0.02 0.77 16 34 H 0.09 0.46 7.85 -2.39 -0.02 0.45 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.43 10.41 8.61 -92.71 -0.80 9.62 16 41 H 0.16 6.58 5.92 -2.91 -0.02 6.57 16 42 H 0.21 6.03 8.06 -2.91 -0.02 6.01 16 43 H 0.08 3.28 7.50 -2.38 -0.02 3.26 16 44 H 0.05 2.13 7.19 -2.39 -0.02 2.12 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -86.28 375.91 2.43 -83.85 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.15 Total: 26.30 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 6.32 Total: 2.89 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.33 Total: -112.95 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -2.60 Total: -42.88 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.88 Total: 42.79 kcal Total: -86.28 2.43 -83.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.681 kcal (2) G-P(sol) polarization free energy of solvation -86.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds