Wall clock time and date at job start Tue Mar 31 2020 14:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 O 1.42898 * 109.47416 * 240.00224 * 2 1 3 5 5 C 1.42890 * 114.00236 * 89.99836 * 4 2 1 6 6 C 1.53005 * 109.47629 * 179.97438 * 5 4 2 7 7 H 1.09005 * 110.26861 * 54.29450 * 6 5 4 8 8 C 1.54943 * 110.31457 * 176.38845 * 6 5 4 9 9 C 1.55409 * 100.89287 * 155.28666 * 8 6 5 10 10 C 1.54378 * 102.31371 * 325.99545 * 9 8 6 11 11 O 1.43239 * 107.58794 * 21.28229 * 10 9 8 12 12 C 1.50702 * 109.47055 * 120.00124 * 2 1 3 13 13 O 1.21291 * 120.00381 * 115.00620 * 12 2 1 14 14 N 1.34780 * 119.99514 * 294.99913 * 12 2 1 15 15 C 1.40166 * 119.99616 * 179.97438 * 14 12 2 16 16 C 1.40408 * 125.97282 * 0.31981 * 15 14 12 17 17 C 1.35236 * 107.86661 * 180.13023 * 16 15 14 18 18 N 1.34973 * 107.86228 * 359.58257 * 17 16 15 19 19 C 1.46493 * 125.97661 * 180.29811 * 18 17 16 20 20 C 1.50709 * 109.47111 * 125.00210 * 19 18 17 21 21 H 1.08002 * 119.99729 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00224 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00219 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99896 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47121 * 90.00365 * 24 22 20 26 26 H 1.48504 * 109.46988 * 210.00146 * 24 22 20 27 27 H 1.48505 * 109.47382 * 330.00015 * 24 22 20 28 28 N 1.31214 * 125.97117 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47235 * 60.00218 * 1 2 3 30 30 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47410 * 299.99893 * 1 2 3 32 32 H 1.08999 * 109.47161 * 300.00038 * 5 4 2 33 33 H 1.09005 * 109.47525 * 59.99904 * 5 4 2 34 34 H 1.08994 * 111.12258 * 273.28277 * 8 6 5 35 35 H 1.09002 * 111.11920 * 37.44441 * 8 6 5 36 36 H 1.08995 * 110.88645 * 207.75486 * 9 8 6 37 37 H 1.09009 * 110.93121 * 84.25087 * 9 8 6 38 38 H 1.09001 * 109.83021 * 261.77527 * 10 9 8 39 39 H 1.09000 * 109.91372 * 140.83476 * 10 9 8 40 40 H 0.96997 * 120.00519 * 0.02562 * 14 12 2 41 41 H 1.07996 * 126.06656 * 0.02562 * 16 15 14 42 42 H 1.08002 * 126.07283 * 179.85223 * 17 16 15 43 43 H 1.09004 * 109.47518 * 244.99968 * 19 18 17 44 44 H 1.08996 * 109.47375 * 5.00448 * 19 18 17 45 45 H 0.96993 * 120.00199 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2940 6 6 2.7092 -0.6405 -3.4788 7 1 2.0366 -1.4754 -3.6752 8 6 2.8398 0.2527 -4.7381 9 6 3.9145 -0.5298 -5.5430 10 6 4.8093 -1.1055 -4.4245 11 8 4.0375 -1.1212 -3.2179 12 6 2.0323 -0.7104 1.2305 13 8 2.6531 -1.7467 1.1215 14 7 1.7918 -0.1941 2.4520 15 6 2.2585 -0.8552 3.5965 16 6 2.9911 -2.0528 3.6161 17 6 3.2473 -2.3614 4.9076 18 7 2.7079 -1.3943 5.6792 19 6 2.7578 -1.3324 7.1420 20 6 3.3466 -0.0125 7.5692 21 1 3.6526 0.7083 6.8253 22 6 3.4947 0.2748 8.9095 23 7 4.0081 1.4268 9.2822 24 14 2.9649 -0.9716 10.1959 25 1 4.1052 -1.8673 10.5166 26 1 2.5330 -0.2603 11.4259 27 1 1.8351 -1.7781 9.6681 28 7 2.0927 -0.4596 4.8365 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.2538 0.6546 -2.5588 33 1 2.9320 0.9514 -2.0449 34 1 1.8975 0.3030 -5.2835 35 1 3.1943 1.2500 -4.4772 36 1 4.4825 0.1412 -6.1873 37 1 3.4584 -1.3304 -6.1255 38 1 5.6884 -0.4748 -4.2928 39 1 5.1166 -2.1196 -4.6799 40 1 1.2951 0.6345 2.5392 41 1 3.2946 -2.6267 2.7530 42 1 3.7910 -3.2259 5.2591 43 1 1.7492 -1.4275 7.5444 44 1 3.3776 -2.1458 7.5191 45 1 4.1120 1.6290 10.2252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117710476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:37 Heat of formation + Delta-G solvation = -37.558616 kcal Electronic energy + Delta-G solvation = -26567.115485 eV Core-core repulsion = 22587.259227 eV Total energy + Delta-G solvation = -3979.856257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77387 -39.96071 -39.43412 -37.59751 -34.76271 -33.35996 -32.62458 -32.24805 -31.15642 -30.29197 -29.35014 -27.19543 -25.98590 -24.59202 -22.58830 -22.07785 -21.66164 -21.40740 -20.16705 -19.50355 -17.49173 -17.31681 -17.13561 -16.94437 -16.35615 -16.12504 -15.70060 -15.27285 -15.15503 -14.83589 -14.52291 -14.05561 -13.81584 -13.65830 -13.49761 -13.06588 -12.97507 -12.67491 -12.51078 -12.44459 -12.30470 -12.16474 -12.06710 -11.81272 -11.56271 -11.48521 -11.21879 -11.11855 -10.75278 -10.62365 -10.13413 -9.98758 -9.95755 -9.77478 -9.52557 -9.37993 -8.75680 -8.17088 -7.50550 -6.22517 -4.24716 2.31350 2.47566 2.87483 3.16268 3.23235 3.23910 3.34146 3.47941 3.68700 3.84931 4.03011 4.23903 4.39811 4.46892 4.51054 4.64133 4.72340 4.78713 4.85872 4.88655 5.05306 5.05637 5.11825 5.22740 5.28244 5.35248 5.37502 5.46106 5.49422 5.55287 5.70199 5.71709 5.82348 6.20495 6.39315 6.46605 6.56001 6.68144 6.72391 6.87418 7.26196 7.36548 7.60376 7.83485 8.27195 8.34804 8.57917 8.87359 9.32480 10.90187 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028345 B = 0.002021 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.578787 B =13853.181645 C =14050.249263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 H 0.090 0.910 4 O -0.346 6.346 5 C 0.060 3.940 6 C 0.084 3.916 7 H 0.080 0.920 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.366 6.366 12 C 0.518 3.482 13 O -0.491 6.491 14 N -0.630 5.630 15 C 0.262 3.738 16 C -0.283 4.283 17 C 0.051 3.949 18 N -0.319 5.319 19 C 0.232 3.768 20 C -0.534 4.534 21 H 0.086 0.914 22 C 0.076 3.924 23 N -0.888 5.888 24 Si 0.873 3.127 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.297 5.297 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.411 0.589 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.042 0.958 44 H 0.049 0.951 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 -2.039 -28.318 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 H 0.108 0.892 4 O -0.264 6.264 5 C -0.016 4.016 6 C 0.026 3.974 7 H 0.098 0.902 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.030 4.030 11 O -0.285 6.285 12 C 0.303 3.697 13 O -0.362 6.362 14 N -0.279 5.279 15 C 0.008 3.992 16 C -0.314 4.314 17 C -0.098 4.098 18 N -0.101 5.101 19 C 0.113 3.887 20 C -0.572 4.572 21 H 0.104 0.896 22 C -0.128 4.128 23 N -0.525 5.525 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.189 1.189 28 N -0.128 5.128 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.246 0.754 41 H 0.179 0.821 42 H 0.187 0.813 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.545 -2.064 -27.177 27.814 hybrid contribution -0.157 -0.273 0.186 0.365 sum -5.701 -2.337 -26.991 27.685 Atomic orbital electron populations 1.22269 0.93249 1.04173 1.03305 1.21778 0.95063 0.96238 0.85356 0.89240 1.88104 1.86453 1.33355 1.18464 1.22791 0.99531 0.93002 0.86325 1.22960 0.85932 0.95927 0.92537 0.90179 1.23270 1.00238 0.99648 0.95585 1.23131 0.97385 1.00328 0.98424 1.23155 0.94689 1.00968 0.84207 1.88603 1.22551 1.86398 1.30932 1.20310 0.80254 0.85869 0.83306 1.90675 1.37567 1.22411 1.85574 1.42367 1.55973 1.26769 1.02828 1.19075 0.99595 0.93923 0.86559 1.21570 1.11964 1.00637 0.97271 1.22560 1.00365 0.95754 0.91109 1.48606 1.39232 1.14916 1.07354 1.20047 0.98472 0.99937 0.70252 1.21110 1.42116 1.00317 0.93655 0.89643 1.24835 0.94448 0.95449 0.98067 1.69871 1.43703 1.22103 1.16836 0.86903 0.79655 0.81715 0.81802 1.19710 1.20546 1.18863 1.77380 1.22809 1.14783 0.97796 0.91099 0.90783 0.90603 0.91705 0.92230 0.89464 0.89980 0.89852 0.90363 0.91281 0.91311 0.75406 0.82081 0.81345 0.94032 0.93315 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.08 0.84 3.13 -27.88 -0.09 0.75 16 3 H 0.09 0.73 7.79 -51.93 -0.40 0.33 16 4 O -0.35 -4.37 9.52 -57.79 -0.55 -4.92 16 5 C 0.06 0.53 5.45 37.16 0.20 0.73 16 6 C 0.08 0.74 3.72 -25.70 -0.10 0.64 16 7 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.15 -0.80 6.58 -24.43 -0.16 -0.96 16 9 C -0.16 -0.81 7.02 -24.73 -0.17 -0.99 16 10 C 0.05 0.37 7.80 37.88 0.30 0.67 16 11 O -0.37 -4.36 11.04 -35.96 -0.40 -4.76 16 12 C 0.52 7.97 7.15 -10.98 -0.08 7.89 16 13 O -0.49 -9.54 13.64 -14.31 -0.20 -9.74 16 14 N -0.63 -9.89 5.41 -11.13 -0.06 -9.95 16 15 C 0.26 5.33 8.11 -154.39 -1.25 4.08 16 16 C -0.28 -5.73 9.61 -39.83 -0.38 -6.11 16 17 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 18 N -0.32 -7.34 3.67 -62.56 -0.23 -7.57 16 19 C 0.23 5.55 5.33 -5.19 -0.03 5.52 16 20 C -0.53 -15.16 9.79 -34.44 -0.34 -15.49 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 23 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 24 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 28 N -0.30 -6.87 12.42 31.44 0.39 -6.48 16 29 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 32 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.41 5.10 8.61 -40.82 -0.35 4.75 16 41 H 0.16 3.23 5.92 -52.49 -0.31 2.92 16 42 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 43 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 44 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -37.07 376.18 -8.18 -45.24 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.87 Total: 4.31 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.04 Total: -1.45 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.87 Total: -49.91 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -1.14 Total: -19.41 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.07 -8.18 -45.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.683 kcal (2) G-P(sol) polarization free energy of solvation -37.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds