Wall clock time and date at job start Tue Mar 31 2020 14:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 O 1.42898 * 109.47416 * 240.00224 * 2 1 3 5 5 C 1.42890 * 114.00236 * 89.99836 * 4 2 1 6 6 C 1.53005 * 109.47629 * 179.97438 * 5 4 2 7 7 H 1.09005 * 110.26861 * 54.29450 * 6 5 4 8 8 C 1.54943 * 110.31457 * 176.38845 * 6 5 4 9 9 C 1.55409 * 100.89287 * 155.28666 * 8 6 5 10 10 C 1.54378 * 102.31371 * 325.99545 * 9 8 6 11 11 O 1.43239 * 107.58794 * 21.28229 * 10 9 8 12 12 C 1.50702 * 109.47055 * 120.00124 * 2 1 3 13 13 O 1.21291 * 120.00381 * 115.00620 * 12 2 1 14 14 N 1.34780 * 119.99514 * 294.99913 * 12 2 1 15 15 C 1.40166 * 119.99616 * 179.97438 * 14 12 2 16 16 C 1.40408 * 125.97282 * 0.31981 * 15 14 12 17 17 C 1.35236 * 107.86661 * 180.13023 * 16 15 14 18 18 N 1.34973 * 107.86228 * 359.58257 * 17 16 15 19 19 C 1.46493 * 125.97661 * 180.29811 * 18 17 16 20 20 C 1.50709 * 109.47111 * 125.00210 * 19 18 17 21 21 H 1.08002 * 119.99729 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00224 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00219 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99896 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47121 * 90.00365 * 24 22 20 26 26 H 1.48504 * 109.46988 * 210.00146 * 24 22 20 27 27 H 1.48505 * 109.47382 * 330.00015 * 24 22 20 28 28 N 1.31214 * 125.97117 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47235 * 60.00218 * 1 2 3 30 30 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47410 * 299.99893 * 1 2 3 32 32 H 1.08999 * 109.47161 * 300.00038 * 5 4 2 33 33 H 1.09005 * 109.47525 * 59.99904 * 5 4 2 34 34 H 1.08994 * 111.12258 * 273.28277 * 8 6 5 35 35 H 1.09002 * 111.11920 * 37.44441 * 8 6 5 36 36 H 1.08995 * 110.88645 * 207.75486 * 9 8 6 37 37 H 1.09009 * 110.93121 * 84.25087 * 9 8 6 38 38 H 1.09001 * 109.83021 * 261.77527 * 10 9 8 39 39 H 1.09000 * 109.91372 * 140.83476 * 10 9 8 40 40 H 0.96997 * 120.00519 * 0.02562 * 14 12 2 41 41 H 1.07996 * 126.06656 * 0.02562 * 16 15 14 42 42 H 1.08002 * 126.07283 * 179.85223 * 17 16 15 43 43 H 1.09004 * 109.47518 * 244.99968 * 19 18 17 44 44 H 1.08996 * 109.47375 * 5.00448 * 19 18 17 45 45 H 0.96993 * 120.00199 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2940 6 6 2.7092 -0.6405 -3.4788 7 1 2.0366 -1.4754 -3.6752 8 6 2.8398 0.2527 -4.7381 9 6 3.9145 -0.5298 -5.5430 10 6 4.8093 -1.1055 -4.4245 11 8 4.0375 -1.1212 -3.2179 12 6 2.0323 -0.7104 1.2305 13 8 2.6531 -1.7467 1.1215 14 7 1.7918 -0.1941 2.4520 15 6 2.2585 -0.8552 3.5965 16 6 2.9911 -2.0528 3.6161 17 6 3.2473 -2.3614 4.9076 18 7 2.7079 -1.3943 5.6792 19 6 2.7578 -1.3324 7.1420 20 6 3.3466 -0.0125 7.5692 21 1 3.6526 0.7083 6.8253 22 6 3.4947 0.2748 8.9095 23 7 4.0081 1.4268 9.2822 24 14 2.9649 -0.9716 10.1959 25 1 4.1052 -1.8673 10.5166 26 1 2.5330 -0.2603 11.4259 27 1 1.8351 -1.7781 9.6681 28 7 2.0927 -0.4596 4.8365 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.2538 0.6546 -2.5588 33 1 2.9320 0.9514 -2.0449 34 1 1.8975 0.3030 -5.2835 35 1 3.1943 1.2500 -4.4772 36 1 4.4825 0.1412 -6.1873 37 1 3.4584 -1.3304 -6.1255 38 1 5.6884 -0.4748 -4.2928 39 1 5.1166 -2.1196 -4.6799 40 1 1.2951 0.6345 2.5392 41 1 3.2946 -2.6267 2.7530 42 1 3.7910 -3.2259 5.2591 43 1 1.7492 -1.4275 7.5444 44 1 3.3776 -2.1458 7.5191 45 1 4.1120 1.6290 10.2252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:36 Heat of formation + Delta-G solvation = -64.254527 kcal Electronic energy + Delta-G solvation = -26568.273106 eV Core-core repulsion = 22587.259227 eV Total energy + Delta-G solvation = -3981.013879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.28614 -40.96460 -40.36337 -38.53914 -36.26449 -35.25032 -33.56389 -33.12695 -32.53996 -31.13365 -30.87262 -29.01060 -26.65220 -25.66991 -24.31086 -22.85830 -22.50806 -22.26886 -21.73502 -20.89798 -19.11598 -18.55293 -18.27051 -17.88439 -17.70183 -16.99913 -16.82644 -16.55527 -16.28744 -15.97459 -15.82965 -15.37696 -15.03466 -14.80945 -14.52797 -14.37269 -14.12543 -13.93203 -13.86589 -13.59269 -13.30821 -13.07776 -12.98573 -12.65633 -12.54523 -12.43268 -12.31817 -12.14652 -12.06900 -11.83365 -11.67306 -11.62869 -11.47577 -10.99711 -10.87040 -10.53983 -10.46323 -9.80142 -9.14240 -8.37549 -6.47917 0.88316 1.18927 1.36616 1.40355 1.40699 1.49860 2.12410 2.17206 2.29056 2.74507 2.91153 2.94962 3.45117 3.57372 3.83917 3.89190 3.93087 3.98746 4.05516 4.16676 4.18404 4.26685 4.38743 4.51047 4.59128 4.59416 4.69799 4.73351 4.80021 4.82954 4.86046 4.87941 4.90164 4.98939 5.02130 5.11242 5.20847 5.23988 5.25399 5.84669 5.96916 5.99448 6.15969 6.27759 6.39455 6.57680 6.94748 7.07257 7.14934 8.79491 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028345 B = 0.002021 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.578787 B =13853.181645 C =14050.249263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.084 3.916 3 H 0.121 0.879 4 O -0.381 6.381 5 C 0.055 3.945 6 C 0.072 3.928 7 H 0.073 0.927 8 C -0.139 4.139 9 C -0.149 4.149 10 C 0.035 3.965 11 O -0.410 6.410 12 C 0.515 3.485 13 O -0.537 6.537 14 N -0.621 5.621 15 C 0.266 3.734 16 C -0.299 4.299 17 C 0.062 3.938 18 N -0.343 5.343 19 C 0.239 3.761 20 C -0.547 4.547 21 H 0.026 0.974 22 C 0.014 3.986 23 N -0.941 5.941 24 Si 0.956 3.044 25 H -0.254 1.254 26 H -0.280 1.280 27 H -0.239 1.239 28 N -0.343 5.343 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.426 0.574 41 H 0.162 0.838 42 H 0.211 0.789 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.111 -2.748 -29.361 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 H 0.138 0.862 4 O -0.300 6.300 5 C -0.021 4.021 6 C 0.015 3.985 7 H 0.090 0.910 8 C -0.177 4.177 9 C -0.186 4.186 10 C -0.041 4.041 11 O -0.330 6.330 12 C 0.302 3.698 13 O -0.410 6.410 14 N -0.272 5.272 15 C 0.011 3.989 16 C -0.330 4.330 17 C -0.086 4.086 18 N -0.125 5.125 19 C 0.119 3.881 20 C -0.585 4.585 21 H 0.045 0.955 22 C -0.185 4.185 23 N -0.580 5.580 24 Si 0.777 3.223 25 H -0.178 1.178 26 H -0.206 1.206 27 H -0.162 1.162 28 N -0.173 5.173 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.264 0.736 41 H 0.179 0.821 42 H 0.228 0.772 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.992 -2.752 -28.273 29.254 hybrid contribution 0.358 0.001 0.346 0.498 sum -6.634 -2.751 -27.927 28.836 Atomic orbital electron populations 1.22276 0.90711 1.03818 1.05527 1.21892 0.96675 0.96419 0.82710 0.86178 1.88069 1.86888 1.35391 1.19660 1.23066 1.01363 0.92580 0.85091 1.23201 0.84579 0.96549 0.94173 0.90952 1.23270 1.01385 0.99119 0.93888 1.23136 0.97013 1.00809 0.97648 1.23338 0.95135 1.01265 0.84362 1.88555 1.24268 1.86965 1.33234 1.21396 0.78912 0.85396 0.84143 1.90643 1.39615 1.24611 1.86182 1.42513 1.55731 1.27099 1.01873 1.19463 0.98435 0.93917 0.87064 1.21741 1.12621 1.00969 0.97663 1.23225 0.98906 0.95834 0.90593 1.48527 1.40762 1.16005 1.07204 1.19910 0.98754 0.98185 0.71230 1.21220 1.42756 1.01536 0.93004 0.95525 1.25924 0.93995 0.97875 1.00689 1.70046 1.45350 1.24888 1.17734 0.85609 0.80380 0.78722 0.77617 1.17834 1.20552 1.16228 1.77302 1.24836 1.16279 0.98918 0.87992 0.92421 0.89248 0.88059 0.92221 0.87100 0.89223 0.88002 0.89610 0.91150 0.91546 0.73608 0.82054 0.77236 0.93491 0.90077 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.48 71.98 0.68 -1.58 16 2 C 0.08 1.70 3.13 29.85 0.09 1.79 16 3 H 0.12 1.67 7.79 -2.39 -0.02 1.65 16 4 O -0.38 -9.35 9.52 -127.41 -1.21 -10.57 16 5 C 0.05 0.87 5.45 71.98 0.39 1.26 16 6 C 0.07 1.20 3.72 31.26 0.12 1.32 16 7 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 8 C -0.14 -1.16 6.58 32.09 0.21 -0.95 16 9 C -0.15 -1.29 7.02 31.89 0.22 -1.06 16 10 C 0.04 0.56 7.80 72.45 0.56 1.12 16 11 O -0.41 -9.99 11.04 -148.29 -1.64 -11.63 16 12 C 0.51 15.80 7.15 87.66 0.63 16.43 16 13 O -0.54 -21.37 13.64 15.92 0.22 -21.15 16 14 N -0.62 -19.51 5.41 -307.50 -1.66 -21.18 16 15 C 0.27 10.98 8.11 133.32 1.08 12.06 16 16 C -0.30 -12.15 9.61 22.11 0.21 -11.94 16 17 C 0.06 2.42 11.44 83.52 0.96 3.37 16 18 N -0.34 -15.75 3.67 -351.84 -1.29 -17.04 16 19 C 0.24 11.20 5.33 85.64 0.46 11.66 16 20 C -0.55 -31.84 9.79 25.60 0.25 -31.59 16 21 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 22 C 0.01 0.80 5.47 84.65 0.46 1.26 16 23 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 24 Si 0.96 40.91 27.47 68.60 1.88 42.80 16 25 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 28 N -0.34 -16.20 12.42 -54.45 -0.68 -16.87 16 29 H 0.10 0.79 7.87 -2.39 -0.02 0.77 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.98 7.92 -2.39 -0.02 0.96 16 32 H 0.10 0.81 7.87 -2.39 -0.02 0.79 16 33 H 0.06 0.92 8.09 -2.38 -0.02 0.90 16 34 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.62 8.06 -2.39 -0.02 0.60 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.43 10.38 8.61 -92.71 -0.80 9.58 16 41 H 0.16 6.58 5.92 -2.91 -0.02 6.57 16 42 H 0.21 6.03 8.06 -2.91 -0.02 6.01 16 43 H 0.05 2.15 7.20 -2.38 -0.02 2.13 16 44 H 0.08 3.28 7.50 -2.39 -0.02 3.26 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -86.58 376.18 2.40 -84.18 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.15 Total: 26.19 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.33 Total: 3.15 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.33 Total: -112.98 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.63 Total: -43.35 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.80 kcal Total: -86.58 2.40 -84.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.930 kcal (2) G-P(sol) polarization free energy of solvation -86.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds