Wall clock time and date at job start Tue Mar 31 2020 14:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46995 * 2 1 4 4 O 1.42895 * 109.47075 * 120.00158 * 2 1 3 5 5 C 1.42898 * 113.99937 * 269.99959 * 4 2 1 6 6 C 1.53001 * 109.47385 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.27588 * 54.29702 * 6 5 4 8 8 C 1.54950 * 110.31288 * 176.38939 * 6 5 4 9 9 C 1.55412 * 100.89073 * 155.28756 * 8 6 5 10 10 C 1.54387 * 102.31303 * 325.99286 * 9 8 6 11 11 O 1.43242 * 107.58510 * 21.28645 * 10 9 8 12 12 C 1.50702 * 109.47326 * 240.00033 * 2 1 3 13 13 O 1.21291 * 120.00381 * 245.00243 * 12 2 1 14 14 N 1.34780 * 119.99514 * 64.99536 * 12 2 1 15 15 C 1.40166 * 119.99616 * 179.97438 * 14 12 2 16 16 C 1.40408 * 125.97282 * 0.31981 * 15 14 12 17 17 C 1.35236 * 107.86661 * 180.13023 * 16 15 14 18 18 N 1.34973 * 107.86228 * 359.58257 * 17 16 15 19 19 C 1.46501 * 125.97789 * 180.23040 * 18 17 16 20 20 C 1.50695 * 109.46884 * 125.00280 * 19 18 17 21 21 H 1.07996 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99563 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99925 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47115 * 89.99705 * 24 22 20 26 26 H 1.48497 * 109.46784 * 209.99454 * 24 22 20 27 27 H 1.48496 * 109.47431 * 329.99682 * 24 22 20 28 28 N 1.31214 * 125.97117 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47440 * 299.99660 * 1 2 3 30 30 H 1.08996 * 109.47109 * 59.99986 * 1 2 3 31 31 H 1.09002 * 109.46602 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47213 * 300.00085 * 5 4 2 33 33 H 1.08997 * 109.47313 * 60.00435 * 5 4 2 34 34 H 1.08999 * 111.12078 * 273.28012 * 8 6 5 35 35 H 1.08997 * 111.12118 * 37.44242 * 8 6 5 36 36 H 1.08997 * 110.88112 * 207.75145 * 9 8 6 37 37 H 1.09001 * 110.93460 * 84.25642 * 9 8 6 38 38 H 1.08998 * 109.82671 * 261.77628 * 10 9 8 39 39 H 1.08998 * 109.90458 * 140.83939 * 10 9 8 40 40 H 0.96997 * 120.00519 * 0.02562 * 14 12 2 41 41 H 1.07996 * 126.06656 * 0.02562 * 16 15 14 42 42 H 1.08002 * 126.07283 * 179.85223 * 17 16 15 43 43 H 1.09002 * 109.46827 * 245.00222 * 19 18 17 44 44 H 1.08995 * 109.46874 * 4.99638 * 19 18 17 45 45 H 0.97000 * 120.00134 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1829 2.2940 6 6 2.7091 -0.6406 3.4788 7 1 3.6019 -1.1982 3.1955 8 6 3.0122 0.2832 4.6853 9 6 2.8619 -0.7165 5.8657 10 6 1.7383 -1.6498 5.3656 11 8 1.6859 -1.5379 3.9385 12 6 2.0324 -0.7104 -1.2305 13 8 2.6531 -1.7468 -1.1216 14 7 1.7918 -0.1941 -2.4520 15 6 2.2596 -0.8545 -3.5964 16 6 2.9824 -2.0581 -3.6166 17 6 3.2483 -2.3608 -4.9075 18 7 2.7082 -1.3940 -5.6792 19 6 2.7575 -1.3325 -7.1421 20 6 1.3574 -1.2172 -7.6874 21 1 0.5151 -1.1927 -7.0120 22 6 1.1518 -1.1431 -9.0488 23 7 -0.0701 -1.0430 -9.5248 24 14 2.6088 -1.1863 -10.2171 25 1 2.9036 -2.5935 -10.5889 26 1 2.2856 -0.4085 -11.4401 27 1 3.7952 -0.5913 -9.5511 28 7 2.0929 -0.4594 -4.8365 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 2.9319 0.9513 2.0450 33 1 1.2538 0.6546 2.5588 34 1 4.0260 0.6800 4.6311 35 1 2.2806 1.0880 4.7573 36 1 2.5601 -0.1995 6.7766 37 1 3.7857 -1.2725 6.0252 38 1 0.7847 -1.3438 5.7957 39 1 1.9580 -2.6794 5.6479 40 1 1.2957 0.6348 -2.5392 41 1 3.2757 -2.6382 -2.7541 42 1 3.7921 -3.2252 -5.2590 43 1 3.3400 -0.4641 -7.4497 44 1 3.2245 -2.2385 -7.5282 45 1 -0.2147 -0.9904 -10.4825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117710479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:40 Heat of formation + Delta-G solvation = -38.006821 kcal Electronic energy + Delta-G solvation = -26499.210472 eV Core-core repulsion = 22519.334779 eV Total energy + Delta-G solvation = -3979.875693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79353 -39.98523 -39.45807 -37.60569 -34.78567 -33.36910 -32.65540 -32.24363 -31.17010 -30.28853 -29.36764 -27.20438 -25.98888 -24.60359 -22.60388 -22.10012 -21.66567 -21.42217 -20.18077 -19.52251 -17.62097 -17.35785 -17.11126 -16.85573 -16.38163 -16.08588 -15.68361 -15.45684 -15.11229 -14.75075 -14.48510 -14.29565 -13.87240 -13.61249 -13.48799 -13.11070 -12.82217 -12.61342 -12.52158 -12.45665 -12.31762 -12.19051 -12.12550 -11.76668 -11.65187 -11.47662 -11.22424 -11.14330 -10.75833 -10.64172 -10.13159 -9.99943 -9.96816 -9.81791 -9.53823 -9.40220 -8.76314 -8.18976 -7.52484 -6.23156 -4.25420 2.28958 2.45210 2.85945 3.15586 3.22511 3.23160 3.32925 3.45027 3.66586 3.83900 4.00868 4.23220 4.37952 4.44853 4.53004 4.65218 4.71087 4.73944 4.82581 4.92925 5.03001 5.04567 5.10513 5.22201 5.32456 5.33884 5.41584 5.43058 5.49727 5.53708 5.69474 5.70256 5.92190 6.18524 6.37863 6.44685 6.54085 6.66583 6.68261 6.86135 7.25254 7.34521 7.58304 7.81915 8.24296 8.33889 8.56232 8.86739 9.31748 10.89519 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.039749 B = 0.001929 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.244745 B =14514.191436 C =14794.702813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 H 0.089 0.911 4 O -0.346 6.346 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.082 0.918 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.368 6.368 12 C 0.519 3.481 13 O -0.495 6.495 14 N -0.629 5.629 15 C 0.261 3.739 16 C -0.283 4.283 17 C 0.051 3.949 18 N -0.319 5.319 19 C 0.232 3.768 20 C -0.534 4.534 21 H 0.086 0.914 22 C 0.076 3.924 23 N -0.887 5.887 24 Si 0.873 3.127 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.296 5.296 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.411 0.589 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.042 0.958 44 H 0.049 0.951 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 4.831 28.757 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.017 3.983 3 H 0.106 0.894 4 O -0.264 6.264 5 C -0.016 4.016 6 C 0.026 3.974 7 H 0.100 0.900 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.029 4.029 11 O -0.288 6.288 12 C 0.303 3.697 13 O -0.366 6.366 14 N -0.279 5.279 15 C 0.008 3.992 16 C -0.315 4.315 17 C -0.098 4.098 18 N -0.101 5.101 19 C 0.113 3.887 20 C -0.573 4.573 21 H 0.104 0.896 22 C -0.128 4.128 23 N -0.525 5.525 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.189 1.189 28 N -0.127 5.127 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.246 0.754 41 H 0.179 0.821 42 H 0.187 0.813 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.789 4.666 27.675 28.656 hybrid contribution 0.729 0.177 -0.203 0.777 sum 6.517 4.843 27.471 28.646 Atomic orbital electron populations 1.22257 0.93072 1.04417 1.03236 1.21776 0.95397 0.95940 0.85207 0.89374 1.88115 1.86463 1.33458 1.18339 1.22783 1.00306 0.92590 0.85905 1.22979 0.91689 0.90266 0.92447 0.89992 1.23269 1.03362 0.98399 0.93708 1.23131 0.99810 0.97466 0.98883 1.23145 0.98496 0.99567 0.81735 1.88555 1.54338 1.65828 1.20032 1.20329 0.80181 0.85810 0.83341 1.90664 1.37929 1.22317 1.85654 1.42364 1.55852 1.26822 1.02825 1.19077 0.99475 0.94127 0.86517 1.21562 1.12302 1.00280 0.97320 1.22562 1.00550 0.95600 0.91073 1.48615 1.38456 1.15711 1.07293 1.20048 1.00155 0.98242 0.70249 1.21109 0.90857 1.52306 0.92987 0.89631 1.24837 0.95905 0.94271 0.97762 1.69873 1.20028 1.48856 1.13710 0.86903 0.83051 0.78867 0.81257 1.19711 1.20537 1.18877 1.77384 1.21692 1.15960 0.97685 0.91041 0.90653 0.90646 0.91731 0.92239 0.89405 0.90017 0.89866 0.90313 0.91346 0.91327 0.75357 0.82098 0.81340 0.94037 0.93316 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.48 37.16 0.35 -1.23 16 2 C 0.08 0.85 3.13 -27.88 -0.09 0.76 16 3 H 0.09 0.66 7.79 -51.93 -0.40 0.26 16 4 O -0.35 -4.36 9.52 -57.79 -0.55 -4.91 16 5 C 0.06 0.52 5.45 37.16 0.20 0.73 16 6 C 0.08 0.72 3.72 -25.70 -0.10 0.63 16 7 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.15 -0.78 6.58 -24.42 -0.16 -0.94 16 9 C -0.16 -0.76 7.02 -24.72 -0.17 -0.93 16 10 C 0.05 0.34 7.80 37.88 0.30 0.63 16 11 O -0.37 -4.01 11.04 -35.96 -0.40 -4.41 16 12 C 0.52 7.83 7.15 -10.98 -0.08 7.75 16 13 O -0.49 -9.36 13.64 -14.31 -0.20 -9.56 16 14 N -0.63 -9.74 5.41 -11.13 -0.06 -9.80 16 15 C 0.26 5.26 8.11 -154.39 -1.25 4.01 16 16 C -0.28 -5.65 9.61 -39.83 -0.38 -6.03 16 17 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 18 N -0.32 -7.28 3.67 -62.56 -0.23 -7.51 16 19 C 0.23 5.52 5.33 -5.20 -0.03 5.49 16 20 C -0.53 -15.12 9.79 -34.44 -0.34 -15.46 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 23 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 24 Si 0.87 20.14 27.47 -169.99 -4.67 15.48 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 28 N -0.30 -6.81 12.42 31.44 0.39 -6.42 16 29 H 0.07 0.52 7.87 -51.93 -0.41 0.12 16 30 H 0.07 0.59 7.92 -51.93 -0.41 0.18 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.36 8.06 -51.93 -0.42 -0.06 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.41 5.04 8.61 -40.82 -0.35 4.69 16 41 H 0.16 3.17 5.92 -52.49 -0.31 2.86 16 42 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 43 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 44 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -36.55 376.18 -8.18 -44.73 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.87 Total: 4.31 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.04 Total: -1.75 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.87 Total: -49.56 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -1.14 Total: -18.88 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.55 -8.18 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.722 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds