Wall clock time and date at job start Tue Mar 31 2020 14:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46995 * 2 1 4 4 O 1.42895 * 109.47075 * 120.00158 * 2 1 3 5 5 C 1.42898 * 113.99937 * 269.99959 * 4 2 1 6 6 C 1.53001 * 109.47385 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.27588 * 54.29702 * 6 5 4 8 8 C 1.54950 * 110.31288 * 176.38939 * 6 5 4 9 9 C 1.55412 * 100.89073 * 155.28756 * 8 6 5 10 10 C 1.54387 * 102.31303 * 325.99286 * 9 8 6 11 11 O 1.43242 * 107.58510 * 21.28645 * 10 9 8 12 12 C 1.50702 * 109.47326 * 240.00033 * 2 1 3 13 13 O 1.21291 * 120.00381 * 245.00243 * 12 2 1 14 14 N 1.34780 * 119.99514 * 64.99536 * 12 2 1 15 15 C 1.40166 * 119.99616 * 179.97438 * 14 12 2 16 16 C 1.40408 * 125.97282 * 0.31981 * 15 14 12 17 17 C 1.35236 * 107.86661 * 180.13023 * 16 15 14 18 18 N 1.34973 * 107.86228 * 359.58257 * 17 16 15 19 19 C 1.46501 * 125.97789 * 180.23040 * 18 17 16 20 20 C 1.50695 * 109.46884 * 125.00280 * 19 18 17 21 21 H 1.07996 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99563 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99925 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47115 * 89.99705 * 24 22 20 26 26 H 1.48497 * 109.46784 * 209.99454 * 24 22 20 27 27 H 1.48496 * 109.47431 * 329.99682 * 24 22 20 28 28 N 1.31214 * 125.97117 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.47440 * 299.99660 * 1 2 3 30 30 H 1.08996 * 109.47109 * 59.99986 * 1 2 3 31 31 H 1.09002 * 109.46602 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47213 * 300.00085 * 5 4 2 33 33 H 1.08997 * 109.47313 * 60.00435 * 5 4 2 34 34 H 1.08999 * 111.12078 * 273.28012 * 8 6 5 35 35 H 1.08997 * 111.12118 * 37.44242 * 8 6 5 36 36 H 1.08997 * 110.88112 * 207.75145 * 9 8 6 37 37 H 1.09001 * 110.93460 * 84.25642 * 9 8 6 38 38 H 1.08998 * 109.82671 * 261.77628 * 10 9 8 39 39 H 1.08998 * 109.90458 * 140.83939 * 10 9 8 40 40 H 0.96997 * 120.00519 * 0.02562 * 14 12 2 41 41 H 1.07996 * 126.06656 * 0.02562 * 16 15 14 42 42 H 1.08002 * 126.07283 * 179.85223 * 17 16 15 43 43 H 1.09002 * 109.46827 * 245.00222 * 19 18 17 44 44 H 1.08995 * 109.46874 * 4.99638 * 19 18 17 45 45 H 0.97000 * 120.00134 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1829 2.2940 6 6 2.7091 -0.6406 3.4788 7 1 3.6019 -1.1982 3.1955 8 6 3.0122 0.2832 4.6853 9 6 2.8619 -0.7165 5.8657 10 6 1.7383 -1.6498 5.3656 11 8 1.6859 -1.5379 3.9385 12 6 2.0324 -0.7104 -1.2305 13 8 2.6531 -1.7468 -1.1216 14 7 1.7918 -0.1941 -2.4520 15 6 2.2596 -0.8545 -3.5964 16 6 2.9824 -2.0581 -3.6166 17 6 3.2483 -2.3608 -4.9075 18 7 2.7082 -1.3940 -5.6792 19 6 2.7575 -1.3325 -7.1421 20 6 1.3574 -1.2172 -7.6874 21 1 0.5151 -1.1927 -7.0120 22 6 1.1518 -1.1431 -9.0488 23 7 -0.0701 -1.0430 -9.5248 24 14 2.6088 -1.1863 -10.2171 25 1 2.9036 -2.5935 -10.5889 26 1 2.2856 -0.4085 -11.4401 27 1 3.7952 -0.5913 -9.5511 28 7 2.0929 -0.4594 -4.8365 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 2.9319 0.9513 2.0450 33 1 1.2538 0.6546 2.5588 34 1 4.0260 0.6800 4.6311 35 1 2.2806 1.0880 4.7573 36 1 2.5601 -0.1995 6.7766 37 1 3.7857 -1.2725 6.0252 38 1 0.7847 -1.3438 5.7957 39 1 1.9580 -2.6794 5.6479 40 1 1.2957 0.6348 -2.5392 41 1 3.2757 -2.6382 -2.7541 42 1 3.7921 -3.2252 -5.2590 43 1 3.3400 -0.4641 -7.4497 44 1 3.2245 -2.2385 -7.5282 45 1 -0.2147 -0.9904 -10.4825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:39 Heat of formation + Delta-G solvation = -64.103035 kcal Electronic energy + Delta-G solvation = -26500.342089 eV Core-core repulsion = 22519.334779 eV Total energy + Delta-G solvation = -3981.007310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28391 -40.96739 -40.35903 -38.53564 -36.26348 -35.24835 -33.56912 -33.11988 -32.53955 -31.13114 -30.87197 -29.00975 -26.64514 -25.68607 -24.31594 -22.86667 -22.48381 -22.26140 -21.73212 -20.89632 -19.11698 -18.56024 -18.33037 -17.97553 -17.55294 -16.92147 -16.82147 -16.59283 -16.26256 -16.00543 -15.79062 -15.31936 -15.17623 -14.83694 -14.50967 -14.37996 -14.13947 -13.88114 -13.85923 -13.54316 -13.37673 -13.07132 -12.97378 -12.64434 -12.56986 -12.42841 -12.32545 -12.17252 -12.07107 -11.83146 -11.67017 -11.62758 -11.47015 -10.98317 -10.86828 -10.54753 -10.46105 -9.79745 -9.13931 -8.37323 -6.47714 0.88374 1.18032 1.36725 1.40359 1.41362 1.50001 2.11648 2.18166 2.29261 2.75076 2.90106 2.95226 3.45070 3.57360 3.83098 3.92400 3.93425 3.99093 4.00434 4.16784 4.18904 4.27947 4.39003 4.50309 4.59254 4.60573 4.67338 4.73108 4.77609 4.83599 4.86021 4.88359 4.91072 4.99620 5.02467 5.11442 5.18718 5.24342 5.25700 5.84966 5.97176 5.99758 6.14763 6.27572 6.39777 6.58040 6.94731 7.06800 7.15165 8.79708 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.039749 B = 0.001929 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.244745 B =14514.191436 C =14794.702813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 H 0.130 0.870 4 O -0.382 6.382 5 C 0.055 3.945 6 C 0.073 3.927 7 H 0.063 0.937 8 C -0.140 4.140 9 C -0.150 4.150 10 C 0.037 3.963 11 O -0.405 6.405 12 C 0.517 3.483 13 O -0.537 6.537 14 N -0.620 5.620 15 C 0.266 3.734 16 C -0.298 4.298 17 C 0.062 3.938 18 N -0.343 5.343 19 C 0.239 3.761 20 C -0.548 4.548 21 H 0.026 0.974 22 C 0.014 3.986 23 N -0.941 5.941 24 Si 0.956 3.044 25 H -0.254 1.254 26 H -0.280 1.280 27 H -0.239 1.239 28 N -0.343 5.343 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.426 0.574 41 H 0.163 0.837 42 H 0.211 0.789 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 5.946 29.753 31.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.026 3.974 3 H 0.148 0.852 4 O -0.301 6.301 5 C -0.021 4.021 6 C 0.016 3.984 7 H 0.081 0.919 8 C -0.177 4.177 9 C -0.187 4.187 10 C -0.039 4.039 11 O -0.325 6.325 12 C 0.304 3.696 13 O -0.411 6.411 14 N -0.272 5.272 15 C 0.011 3.989 16 C -0.329 4.329 17 C -0.086 4.086 18 N -0.125 5.125 19 C 0.119 3.881 20 C -0.586 4.586 21 H 0.045 0.955 22 C -0.185 4.185 23 N -0.580 5.580 24 Si 0.777 3.223 25 H -0.179 1.179 26 H -0.206 1.206 27 H -0.162 1.162 28 N -0.174 5.174 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.264 0.736 41 H 0.181 0.819 42 H 0.228 0.772 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.832 5.804 28.724 30.333 hybrid contribution -0.008 -0.210 -0.338 0.397 sum 7.824 5.595 28.386 29.971 Atomic orbital electron populations 1.22265 0.91790 1.03370 1.05160 1.21859 0.96071 0.96800 0.82715 0.85222 1.88083 1.86791 1.35652 1.19538 1.23053 1.01852 0.92599 0.84561 1.23140 0.90627 0.90714 0.93944 0.91884 1.23266 1.04678 0.97998 0.91777 1.23140 0.99030 0.97044 0.99529 1.23337 0.99989 1.00219 0.80399 1.88514 1.55146 1.66770 1.22084 1.21323 0.78889 0.85333 0.84077 1.90633 1.39883 1.24342 1.86214 1.42501 1.55615 1.27173 1.01873 1.19462 0.98247 0.94203 0.86989 1.21743 1.12881 1.00558 0.97730 1.23233 0.99211 0.95561 0.90581 1.48528 1.39995 1.16875 1.07109 1.19904 0.97254 0.99794 0.71102 1.21226 0.91775 1.52792 0.92779 0.95530 1.25927 0.99561 0.93214 0.99755 1.70050 1.23192 1.50312 1.14471 0.85608 0.78946 0.79868 0.77904 1.17852 1.20576 1.16190 1.77305 1.23708 1.17529 0.98823 0.88558 0.89272 0.93173 0.89229 0.90740 0.87773 0.88695 0.87804 0.90079 0.90494 0.91649 0.73591 0.81932 0.77238 0.93495 0.90079 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.48 71.98 0.68 -2.15 16 2 C 0.09 1.74 3.13 29.85 0.09 1.83 16 3 H 0.13 1.52 7.79 -2.39 -0.02 1.50 16 4 O -0.38 -9.32 9.52 -127.41 -1.21 -10.54 16 5 C 0.06 0.85 5.45 71.98 0.39 1.24 16 6 C 0.07 1.20 3.72 31.26 0.12 1.32 16 7 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 8 C -0.14 -1.14 6.58 32.09 0.21 -0.92 16 9 C -0.15 -1.19 7.02 31.89 0.22 -0.97 16 10 C 0.04 0.50 7.80 72.45 0.56 1.07 16 11 O -0.40 -8.84 11.04 -148.28 -1.64 -10.47 16 12 C 0.52 15.43 7.15 87.66 0.63 16.06 16 13 O -0.54 -20.66 13.64 15.92 0.22 -20.44 16 14 N -0.62 -19.08 5.41 -307.50 -1.66 -20.74 16 15 C 0.27 10.79 8.11 133.32 1.08 11.87 16 16 C -0.30 -11.86 9.61 22.11 0.21 -11.65 16 17 C 0.06 2.37 11.44 83.52 0.96 3.32 16 18 N -0.34 -15.58 3.67 -351.85 -1.29 -16.87 16 19 C 0.24 11.13 5.33 85.63 0.46 11.58 16 20 C -0.55 -31.75 9.79 25.60 0.25 -31.50 16 21 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 22 C 0.01 0.81 5.47 84.66 0.46 1.27 16 23 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 24 Si 0.96 40.72 27.47 68.60 1.88 42.61 16 25 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 28 N -0.34 -16.04 12.42 -54.45 -0.68 -16.71 16 29 H 0.10 1.16 7.87 -2.39 -0.02 1.14 16 30 H 0.09 1.24 7.92 -2.39 -0.02 1.22 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.07 0.90 7.87 -2.39 -0.02 0.88 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.09 0.54 8.06 -2.39 -0.02 0.52 16 36 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.43 10.17 8.61 -92.71 -0.80 9.37 16 41 H 0.16 6.44 5.92 -2.91 -0.02 6.42 16 42 H 0.21 5.90 8.06 -2.91 -0.02 5.87 16 43 H 0.05 2.13 7.20 -2.39 -0.02 2.11 16 44 H 0.08 3.25 7.50 -2.39 -0.02 3.23 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -85.01 376.18 2.40 -82.62 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.15 Total: 25.97 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.33 Total: 2.37 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -3.33 Total: -112.12 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -2.63 Total: -41.45 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.61 kcal Total: -85.01 2.40 -82.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.513 kcal (2) G-P(sol) polarization free energy of solvation -85.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds